mRNA_H-paniculata_contig1452.2707.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1452.2707.1
Unique NamemRNA_H-paniculata_contig1452.2707.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1452.2707.1 vs. uniprot
Match: A0A6H5KI56_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI56_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 7.540e-47
Identity = 144/297 (48.48%), Postives = 172/297 (57.91%), Query Frame = 1
Query:  199 CRRRLLRPFLVETDQPPCPTTATEAAGVVDGGGQKGGDXXXXXXXEDSPVADGVWGGVLDNVGPCRRWRGGGRSSDSGVQSGRRRGWAAAVSEEVWGFGAGGVCGSEASCNFPAYVGFVDRALKACKPLREKTRGSVSLIPTPAENSTTKNDAVASGGNXXXXXXXXXXGSNMVSRDDTAGMHGMIARWLRGESERLVVYIAADSTALPAADRARAVRALLHSVGILAVFFS----HACEVGVDQPELESTLWATTTSVVDALKHAAAAADYQTLCEGLARLHRIVGCLLRAAANAS 1077
            CRRR   PFL+ET   PCP    +AAGV D        XXXXXXX  + +ADGVWGG LD++GP RR  G             R+GWAAA +  VWG G    CGS+A    PAYV F+   LK C         ++    +P    T+    V  G     XXXXXXX SNMVSR+DTA MH +IARWLR E  RL    A     L   +RAR VRALLHS+G+LAVFF     HACE GVD  EL+S LW + T+ V+AL+H A  A+Y TLCEGLARL+R++  LL  AA  S
Sbjct:  616 CRRR---PFLIETGDTPCPLI--DAAGVADREATAAXXXXXXXXXXXA-IADGVWGGALDDLGPFRRRHG---XXXXXXXXXARKGWAAATAVAVWGHGRR--CGSDAE--LPAYVDFMASTLKEC---------ALQAEASPLCGRTSLETGVLGG-----XXXXXXXXSNMVSREDTAAMHRLIARWLRPEVARLARRAAEPMLPL---ERARVVRALLHSLGVLAVFFRWEWCHACETGVDHLELQSALWVSVTASVEALEHTARVAEYTTLCEGLARLNRVIRSLLHRAAGCS 882          
BLAST of mRNA_H-paniculata_contig1452.2707.1 vs. uniprot
Match: D8LNB7_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB7_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 9.830e-43
Identity = 143/334 (42.81%), Postives = 173/334 (51.80%), Query Frame = 1
Query:  217 RPFLVETDQPPCPTTATEAAGVVDGGGQKGGDXXXXXXXEDSP------------VADGVWGGVLDNVGPCRRWRGGGRSSDSGVQSGRRRGWAAAVSEEVWGFGAGGVCGSEASCNFPAYVGFVDRALKACKPLRE-KTRGSVSLIPTPAENSTTKNDAVASGGNXXXXXXXXXXGSNMVSRDDTAGMHGMIARWLRGESERLVVYIAADSTALPAADRARAVRALLHSVGILAVFFSHACEVGVDQPELESTLWATTTSVVDALKHAAAAADYQTLCEGLARLHRIVGCLLRAAANASPAQHDNSEEADQ----------SAAALAEVLRFC 1149
            RPFL+ET   PCP        ++D GG  G D     XX                +ADGVWGG LD++GP RR R GG                        G   GG          PAYV F+   LK C+P  E  +  ++    +P    T+    V  G     XXXXXXX SNMVSR+DTA MH +IARWLR E  RL    A     LP  +RAR VRALLHS+G+ AVFFSHACE GVD  +L+S LWA+  + V AL+H A  A+Y TLCEGLARL+R+V  LL  AA  S +  D SE+  +          SA+AL EVLRFC
Sbjct:  696 RPFLIETGDTPCP--------LLDAGG--GADREAPAXXXXXXXXXXVXXXXXXAIADGVWGGALDDLGPFRR-RHGGEXXXXXXXXXXXXXXXXXXXXXXHGRRGGGD-----DAELPAYVDFMTSTLKECEPRVEASSAAALQAEASPLSGRTSLETGVLGG-----XXXXXXXXSNMVSREDTAAMHRLIARWLRAEVARLARRAAEPM--LPV-ERARVVRALLHSLGVFAVFFSHACEAGVDHLDLQSALWASVAASVKALEHTARVAEYATLCEGLARLNRVVRSLLHRAAGCSSS--DLSEQRCELQGGGGDDYGSASALGEVLRFC 1003          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1452.2707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KI56_9PHAE7.540e-4748.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LNB7_ECTSI9.830e-4342.81Non-specific serine/threonine protein kinase n=1 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1452contigH-paniculata_contig1452:13347..19337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue7.4e-41
Seed eggNOG ortholog2880.D8LNB7
Preferred nameATM
KEGG koko:K04728
KEGG Pathwayko01524,ko03440,ko04064,ko04068,ko04110,ko04115,ko04210,ko04214,ko04218,ko05165,ko05166,ko05202,ko05206,map01524,map03440,map04064,map04068,map04110,map04115,map04210,map04214,map04218,map05165,map05166,map05202,map05206
KEGG ModuleM00295,M00691
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000706,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0000956,GO:0001541,GO:0001666,GO:0001756,GO:0001775,GO:0001894,GO:0001895,GO:0001932,GO:0001934,GO:0002200,GO:0002327,GO:0002329,GO:0002331,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0002562,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006464,GO:0006468,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006975,GO:0006977,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007095,GO:0007127,GO:0007131,GO:0007140,GO:0007143,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007548,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008219,GO:0008285,GO:0008334,GO:0008340,GO:0008406,GO:0008585,GO:0008610,GO:0008630,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009994,GO:0010033,GO:0010165,GO:0010212,GO:0010243,GO:0010259,GO:0010332,GO:0010389,GO:0010468,GO:0010506,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010948,GO:0010965,GO:0010972,GO:0012501,GO:0014070,GO:0014074,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016301,GO:0016303,GO:0016310,GO:0016444,GO:0016458,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019637,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030071,GO:0030097,GO:0030098,GO:0030154,GO:0030163,GO:0030183,GO:0030258,GO:0030330,GO:0030717,GO:0030888,GO:0030889,GO:0031000,GO:0031056,GO:0031058,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031347,GO:0031348,GO:0031399,GO:0031401,GO:0031503,GO:0031570,GO:0031571,GO:0031572,GO:0031577,GO:0031974,GO:0031981,GO:0032006,GO:0032007,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032212,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032944,GO:0032945,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033127,GO:0033129,GO:0033151,GO:0033554,GO:0034350,GO:0034351,GO:0034397,GO:0034641,GO:0034645,GO:0034655,GO:0035004,GO:0035173,GO:0035264,GO:0035282,GO:0035556,GO:0035825,GO:0036092,GO:0036211,GO:0036270,GO:0036289,GO:0036293,GO:0040007,GO:0040029,GO:0042113,GO:0042127,GO:0042157,GO:0042159,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042770,GO:0042981,GO:0043009,GO:0043030,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043279,GO:0043412,GO:0043516,GO:0043517,GO:0043523,GO:0043525,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044783,GO:0044818,GO:0044819,GO:0044877,GO:0045017,GO:0045088,GO:0045132,GO:0045137,GO:0045141,GO:0045143,GO:0045321,GO:0045494,GO:0045786,GO:0045787,GO:0045814,GO:0045824,GO:0045839,GO:0045841,GO:0045892,GO:0045930,GO:0045934,GO:0045935,GO:0045937,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0046545,GO:0046649,GO:0046660,GO:0046700,GO:0046777,GO:0046834,GO:0046854,GO:0046983,GO:0047485,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048538,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048599,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048871,GO:0050000,GO:0050670,GO:0050672,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050864,GO:0050865,GO:0050866,GO:0050869,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051249,GO:0051250,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051321,GO:0051402,GO:0051409,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0052742,GO:0060249,GO:0060255,GO:0060322,GO:0060429,GO:0060548,GO:0061053,GO:0061458,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070482,GO:0070663,GO:0070664,GO:0070727,GO:0070997,GO:0071044,GO:0071156,GO:0071158,GO:0071173,GO:0071174,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071481,GO:0071500,GO:0071704,GO:0071840,GO:0072331,GO:0072359,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072425,GO:0072431,GO:0072434,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090220,GO:0090304,GO:0090399,GO:0090407,GO:0097190,GO:0097193,GO:0097694,GO:0097695,GO:0098813,GO:0104004,GO:0140013,GO:0140096,GO:1900034,GO:1901214,GO:1901215,GO:1901216,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1901796,GO:1901798,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902275,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902532,GO:1902533,GO:1902679,GO:1902749,GO:1902750,GO:1902806,GO:1902807,GO:1903046,GO:1903047,GO:1903432,GO:1903506,GO:1903507,GO:1903624,GO:1903626,GO:1903978,GO:1904262,GO:1904353,GO:1904354,GO:1904356,GO:1904358,GO:1904882,GO:1904884,GO:1905269,GO:1905818,GO:1905819,GO:1905843,GO:1990164,GO:1990391,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000278,GO:2000573,GO:2000816,GO:2001020,GO:2001022,GO:2001141,GO:2001228,GO:2001251,GO:2001252
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0892@1,KOG0892@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03032,ko03400
Exons3
Model size1149
Cds size1149
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1452.2707.1prot_H-paniculata_contig1452.2707.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1452 13347..19337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.097391-CDS-H-paniculata_contig1452:13346..139231622929156.097391-CDS-H-paniculata_contig1452:13346..13923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 13347..13923 +
1691480752.4095123-CDS-H-paniculata_contig1452:13346..139231691480752.4095123-CDS-H-paniculata_contig1452:13346..13923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 13347..13923 +
1622929156.115464-CDS-H-paniculata_contig1452:14341..146571622929156.115464-CDS-H-paniculata_contig1452:14341..14657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 14342..14657 +
1691480752.4216642-CDS-H-paniculata_contig1452:14341..146571691480752.4216642-CDS-H-paniculata_contig1452:14341..14657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 14342..14657 +
1622929156.1303883-CDS-H-paniculata_contig1452:19081..193371622929156.1303883-CDS-H-paniculata_contig1452:19081..19337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 19082..19337 +
1691480752.44159-CDS-H-paniculata_contig1452:19081..193371691480752.44159-CDS-H-paniculata_contig1452:19081..19337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 19082..19337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1452.2707.1

>prot_H-paniculata_contig1452.2707.1 ID=prot_H-paniculata_contig1452.2707.1|Name=mRNA_H-paniculata_contig1452.2707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=383bp
GGGLALIEGEEALSAAVVALVAVTCQGPPPVVQGEFGVGPCAAGTSVAEA
GFFHTGVSSDGGNRRSCRRRLLRPFLVETDQPPCPTTATEAAGVVDGGGQ
KGGDGGDGGDDEDSPVADGVWGGVLDNVGPCRRWRGGGRSSDSGVQSGRR
RGWAAAVSEEVWGFGAGGVCGSEASCNFPAYVGFVDRALKACKPLREKTR
GSVSLIPTPAENSTTKNDAVASGGNDGGGGTGGSSGSNMVSRDDTAGMHG
MIARWLRGESERLVVYIAADSTALPAADRARAVRALLHSVGILAVFFSHA
CEVGVDQPELESTLWATTTSVVDALKHAAAAADYQTLCEGLARLHRIVGC
LLRAAANASPAQHDNSEEADQSAAALAEVLRFC
back to top

mRNA from alignment at H-paniculata_contig1452:13347..19337+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1452.2707.1 ID=mRNA_H-paniculata_contig1452.2707.1|Name=mRNA_H-paniculata_contig1452.2707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5991bp|location=Sequence derived from alignment at H-paniculata_contig1452:13347..19337+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGAGGTCTAGCTTTGATAGAAGGAGAGGAAGCTCTGAGCGCAGCGGT GGTTGCTCTGGTAGCCGTGACGTGTCAGGGGCCGCCGCCGGTAGTGCAAG GCGAGTTCGGCGTTGGTCCTTGTGCTGCTGGCACTAGTGTCGCCGAGGCC GGTTTCTTTCACACGGGTGTCTCAAGCGATGGGGGCAACCGCCGCAGCTG CCGCCGCCGATTGCTTCGTCCATTTCTCGTGGAGACTGACCAACCTCCGT GCCCGACGACGGCGACGGAGGCCGCGGGGGTGGTCGACGGCGGCGGGCAG AAGGGTGGTGATGGTGGTGATGGTGGTGATGACGAGGACTCACCTGTCGC CGACGGGGTGTGGGGTGGAGTTCTCGACAATGTGGGGCCTTGCCGGCGGT GGCGTGGCGGTGGAAGGAGTAGTGATAGTGGGGTGCAATCAGGAAGGAGG CGGGGCTGGGCGGCCGCCGTGTCTGAAGAGGTGTGGGGGTTCGGCGCTGG CGGGGTCTGCGGGAGCGAGGCCAGCTGTAACTTTCCCGCGTACGTTGGGT TTGTCGATCGGGCTCTGAAGGCATGCAGTGAGTGGTTGTGGCATTTCTAC AGCATGCCGAGCTTGCAAATTTCCGAGTGTATCTCGGACCGGTTACAGTT TTCAAAGTTGATTGTTGCTTCAGCGAGAAACTTTGGCTCACTCATTCGTG CCAGAGACGGTATTATGCACACACCTTTACGAGTGTTTCTTTGCCCACAA CCCCAGTGACCAACCTCCACACCAAACGAATATGCGTACCAAGTAGTTTG CTTTGCTCTTTGTCCCTATATTTCTCTCCTATGCCGTCTTCCATTCCCAA ACAATTTGGGAACAGATGTACTACCTCGGCGTCACTTGTCTGCGTACAAA CCGCTGCGCCGCGCTGTCCACACGTCATCACTTAGATCCTCGACCTATCC CCCTCGCCTACCTCTCCCCGCACGTCTCCCTTCAACTTGTGCCAGAGCCG CTTCGGGAGAAAACACGTGGCAGCGTCAGCCTTATTCCTACCCCCGCCGA AAATTCAACAACCAAGAACGATGCTGTCGCCAGTGGTGGCAACGACGGTG GCGGTGGAACCGGTGGAAGCAGCGGAAGCAATATGGTCTCCCGCGACGAC ACCGCCGGCATGCACGGCATGATCGCACGTTGGCTACGGGGTGAGTCGGA AAGGCTGGTGGTCTACATAGCGGCCGATTCTACCGCCCTTCCTGCAGCAG ATAGGGCTAGGGCGGTGCGGGCACTTCTGCACTCTGTCGGCATCCTCGCC GTCTTTTTCAGGTGTGGTCCTCTGGGTGGTCTCTTCTGGACAGGGCTACA GTAGTGCGTGCACACGCGCCTTTTTGGTTTGTCCGTGCGAACAAAGCTGG GTGTCTCGGAAAACAAGACTGTTCAATTCCGCCAAAGCAATCGAAGCATT GAACCCCCCCCCCCCCCCCCCCCCGTGCTCGGTCCTCGCGAGGACATGTG GTCAACCACTAATCGGTGTAGGGAAGCCTGAAGAACCCCCCCTCCCCACG CGATCTTATCCCCGTGCCTCTTGTTCAATCCTTATGTAGTATATCTCTTT GCATTTTTACGCTTGACTGGATGTTGTACCCCTTGTACTCTACGAGTCGT TTGAACAGGGTGGTAAATACGAACCCCCCTTACGGACAAGTACAGACGAG TACATATTCATGTATATATAACCGTGGTTATCGGCTACATAAATCCAGCC TGAAAAAATTTGCCGATATTCAATGGCTGTTTCATACGTATCGTGCCACA AGAAGCGTTTTTGCTCGTGAGCGCAGAAGCCGGTTTTCAGCTCAACGTGC TTCAGGTGTATCCTGTCCTTTCAGAGTGACATGTCAAGTAAGATACATGC CCACCCTCCGTCAGATACCAGTGGTACCGTCAGGACAGAAAGGCACATCT TCTCCTTTCACATATTTGACGGTTACATCTCGGGGTAAGTTAGCGTTGAC CTTAATTGGTTTTTAAATTGCTACGAGTGCGACATATCCGGTCATATGAT TATGGGTAACATAATCTCAGCATGCAATACATTTTTGTGTCGTAACGCTT GATTTATACACGAGTGCTGGGGCGACGACATTTACTGAATACTTTAAACT GACTTCGCTGGCGTCCAGAGGTGTCCTTTGCGTGCTTTTTTTAATCGTTT TTTGCGGCAAAAACGATACATGAAGTGACAGCTTGTGCTGTGTCAGCTGA TGTCTGTTCTGTATGCCACACACGTTAAGTGAGTAATACCGTAATACTCC CTGGTAGTTGTGATACTCCGCATGCAGTCCGCACTGTAACATGGTCCTTT CTTTCTTACCATGACCTCTATTTGCATTTGCTGGGACGGGAATATCTGAG GTACCGAGTGATGAGCCTACTTGACTTTGTACGTACATGGAGTTTTACCT GTGTAAGCTATTATGGCCAGGCGGGTATTTCCACGAGTCCATCCCATGAC TTATGTCGTAGTAGCTGCACTTTTGTTCTGCTCTATTTTCTCAATCCGCT GCAAATCTGGATATCAAGTATAACTATTAGAGTAAAGGCGTATTTTATTC TATTTAACCCGGGCATAAAGAAGAATAATAACGACACTTGACATTCCCGT GGCGAAGCCGTCGCGAAAAGGTGTGGGTGATCCTTTTTATGAGTGGAGGG GGGCTTTCGACCCCATAGTGCTGGACGATGACAGCAGATTGTACAAGAAA AGCGTAGGGTCAGACCAACCATGTAGGTTTGTTCACCCAACGGTCAATCA CAAACGTGTCGTCTCCTAAATGTTTCTCAAGTCCTTTTGGATGACAGGAT CTCTGCGGGGTCCCTTCGAGCGGTTGAGGGGGTATGAGCAAAACGTGCAC GTTTGCTTTTCTCATTTTTAGGCCTCTGTGTTTTTTGGGTGACGCCCTTT TGGTCTGGTTATCTTTCGTGCGCGCAACAGGCACACAGTATCGACGGCGA GTAAGTAACAGAGCGATGACAGCACTGATTACCCTGCCACCGTAGCTGCG ACCGATGCGCAGTTGTGCGACAAATAGTTCTGAATTTTGCTACTTGCTCT GTCTGTACTGTCTGCGGGTGTCGGAGAAGCGCCGTGAGAGCCATGGTGTG GTGTTTTTGATCTAATGTCCTGGCGTGCGGCTTCCTGCGGCATACACCTT CGACGGTCAGTCATTGATGATGTGGTTTGTGCTTCGCGTTTCAATCATAT ACTGCTGCCGTCGAACTCCAAATCATGCCAACTACTGTAAAAGAATAAAT ACAGGACCGTATGTACTTTCAGTAGAGCTCCCTATCCCCGTAGTCATGTT ATGGGCCTTTGTCACAAGTAAATTCCAAAGGGCTGGCCTGTTTACCTAGC AGAGATTGTATAGGGATCGTACACGGTCGGGTGCCATAAGGGTTAATGTG AATGCCAACCCCAGCCATTCCCGGCACGCCCTACCGTCTGGACGAGAACT GTGGGTTTGTCGGGTCATTTCCCGACCATGTCCGGGTTATTGCCATACTT TTGAGAGCGGAGGCACCGCTACACCGTAACCATCGGCTCTCTTAAAAAAA TAGCTTCTACCCCGGCCCACAAGCCACATACCTCACCTCCCGTGTACCGT GCACCCAAAGAGAGGAAAGGACTACCGTCGTCCCTCGCTTCCGCAAGCAG AAGAGTCCGTACCTGCTGTCGGTCAATGACCCTGATGACCCAGACTCGTG AGACAGCCCAATCTTACCCCCTGCAGTTTCGCAAGTTCGCCTGCCAGGTC CAAATCTCCCATCATGCCGTACTACTTCGTGCAATCAGTATTTTTTCTGC TTTCCTTTCTCAATCCGCTGCAATTCTGTGATAGTGCGTATAACTGTTGA GGTAAACATATATATTTATTTGAAGCGGTGAAATTATCTATTTGTCTGCA CGTATTTAGTTTATTGATTATGATCGCTTGACATAATCTCGACGTCGCTG TGTCAGCGCCATATTTACTGATGGCTCTGCGTCCAATTTTTTTAATCTAG ACAGCTGCGATCCCAAATATCCCATATTTACACGTTTTCTATAGTATGGC TTCAATGTGAGATAATGTTGTGGGGCTCTTTAGTTTGGCCCATTTCGTCT TGTTTTATCATGATGATAATGTTTTTTCTACCCTTCGTCGACGCTTTGAT CCTCATGTCTAAGAAGGTTATTTCTGCTCCTTGCCTCTCCAGTGTAACCT AAATAGGGATTTCAATAGTTACACGTGCGTACGTTACTCATTGCTTTGAG TATACCCCATCTGTTCCACCACTTGCTGTCCTTATCTGCCAGCAATTCAC CAAATTATTGACCCTCTGTGGTAGTTGAGGTCTACCACGGTATGTAAGAT GTCATCTATATATCGTTTTGAATATTGTAGGAGTAGGCAATCATCTGGGC TTGCTGTGGTCATGTTCTTTGTCGCGGCTCTTGTAGTAAAGGGGAAGAAA TCTACTCGTACCACAACGTGTCCCACATGTTTGCTAATGCGGGTGCGGAG TTCATTCCCATCAAAATGCCTATGTTTGGCGAAACAAATCCCCGCCGGGT TGTGCGTACACTTTAGTCTAATAGCCGTTCCTCTCTATACCTATGTCATC ATTAGTTTACATCCATGTTGTAGTACCCGTTCTTTCTTAGTATCCGGTAG GTAGTTTTATCACTCCATTTTGCTTTTTTGAGAAGGCTGTGGTCGTGCCC GGTCAGGGTGTCTTTTGGGTAAATCACCACTTTTATGTCCCTTTGTACCC TCTATATGTTTGAACACTGCTTGTAGTTCCTTTTTCAAAAACGTTTTTTC ATATCGTCGGTGGGTATGGACGAGATACTCAAGCAGCTTTAAAATCCCAG CAGACCAAACTGCGCTGCTCTACGTTCGGTACTGCCGAATCATTCAAGTT CAGAATCGCCCACCAACCATTCACTAGGAGCTGCTCTAGTCCCTCTACAT TTCTATATGCCATGCAGTGAGGATGTGACAGCATTGGGGCATTCTGTATC TAGGATTCCCAAGCCTCCGTTTGCAATCCTCTCACAGCTCGTGATGCCCC TTATACCAAAGCGGTGTTTTTCTGGAATTTGAGCGATAAGCACTATCCCC TCCTCGTCGCCGGCAGGTTGCATCCATCGCTTTGAAATTTTCGCAAACTA CATATTATTTGTTGTGCTGTTTTTTTAAATTGGACCGTTGGCTTCCTTTC CGTTCTTGGGTGGGAGTGTGTCTCCTACCTTGGTCCAAATCCAAATGCCA TGCGTGTCGCCTGGCAGTTGTTCTCGTGTTTTTTTTTTGTTGTTTTTTTC CTGGTATGTCTACGTAGCTTTGATTTCAGTTGGGCTGCATAACTCTAGCA CAGGTGCAATAAAGTCACCATTGCTTTGTGCTCACTGTGTACCGTGGATA ATACCAAAGCGGGTCCATCTGTAAAGGAGGGTTTGTAGTTCACGTGGGTA TATATGTCAGGTGCTTTTTCCGAGGTCATGTCATGTTGCGCACATTGCAC ACACGATAGAGGTGATGATTCTTGTCCACGTACATTTCAAACGCTTTTTT AGTGATGATACTTTTAGCTACCTGGATAGTCTCATGCTCCCCCCCCCTCC CTCCCCCCATCTCATCCCTGACCCCCCTCCACTCATCCCCCGATCTCCCC GCTGGCTTTGCGTGCTGCCTTCTTTTGCGTACAAGCCACGCGTGCGAGGT GGGGGTGGATCAGCCGGAGCTAGAGTCGACGTTGTGGGCAACAACGACTT CCGTTGTGGATGCGCTAAAACACGCCGCGGCAGCTGCCGACTACCAGACG CTTTGCGAGGGCCTGGCCAGGCTGCACCGCATTGTGGGCTGTCTATTGCG TGCGGCAGCGAACGCCTCGCCAGCTCAACATGATAACAGCGAAGAAGCTG ACCAGTCGGCTGCGGCGTTGGCTGAAGTTCTGCGATTTTGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1452:13347..19337+

>mRNA_H-paniculata_contig1452.2707.1 ID=mRNA_H-paniculata_contig1452.2707.1|Name=mRNA_H-paniculata_contig1452.2707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2298bp|location=Sequence derived from alignment at H-paniculata_contig1452:13347..19337+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGAGGTCTAGCTTTGATAGAAGGAGAGGAAGCTCTGAGCGCAGCGGT
GGTTGCTCTGGTAGCCGTGACGTGTCAGGGGCCGCCGCCGGTAGTGCAAG
GCGAGTTCGGCGTTGGTCCTTGTGCTGCTGGCACTAGTGTCGCCGAGGCC
GGTTTCTTTCACACGGGTGTCTCAAGCGATGGGGGCAACCGCCGCAGCTG
CCGCCGCCGATTGCTTCGTCCATTTCTCGTGGAGACTGACCAACCTCCGT
GCCCGACGACGGCGACGGAGGCCGCGGGGGTGGTCGACGGCGGCGGGCAG
AAGGGTGGTGATGGTGGTGATGGTGGTGATGACGAGGACTCACCTGTCGC
CGACGGGGTGTGGGGTGGAGTTCTCGACAATGTGGGGCCTTGCCGGCGGT
GGCGTGGCGGTGGAAGGAGTAGTGATAGTGGGGTGCAATCAGGAAGGAGG
CGGGGCTGGGCGGCCGCCGTGTCTGAAGAGGTGTGGGGGTTCGGCGCTGG
CGGGGTCTGCGGGAGCGAGGCCAGCTGTAACTTTCCCGCGTACGTTGGGT
TTGTCGATCGGGCTCTGAAGGCATGCAGGTGGAGGTCTAGCTTTGATAGA
AGGAGAGGAAGCTCTGAGCGCAGCGGTGGTTGCTCTGGTAGCCGTGACGT
GTCAGGGGCCGCCGCCGGTAGTGCAAGGCGAGTTCGGCGTTGGTCCTTGT
GCTGCTGGCACTAGTGTCGCCGAGGCCGGTTTCTTTCACACGGGTGTCTC
AAGCGATGGGGGCAACCGCCGCAGCTGCCGCCGCCGATTGCTTCGTCCAT
TTCTCGTGGAGACTGACCAACCTCCGTGCCCGACGACGGCGACGGAGGCC
GCGGGGGTGGTCGACGGCGGCGGGCAGAAGGGTGGTGATGGTGGTGATGG
TGGTGATGACGAGGACTCACCTGTCGCCGACGGGGTGTGGGGTGGAGTTC
TCGACAATGTGGGGCCTTGCCGGCGGTGGCGTGGCGGTGGAAGGAGTAGT
GATAGTGGGGTGCAATCAGGAAGGAGGCGGGGCTGGGCGGCCGCCGTGTC
TGAAGAGGTGTGGGGGTTCGGCGCTGGCGGGGTCTGCGGGAGCGAGGCCA
GCTGTAACTTTCCCGCGTACGTTGGGTTTGTCGATCGGGCTCTGAAGGCA
TGCAAGCCGCTTCGGGAGAAAACACGTGGCAGCGTCAGCCTTATTCCTAC
CCCCGCCGAAAATTCAACAACCAAGAACGATGCTGTCGCCAGTGGTGGCA
ACGACGGTGGCGGTGGAACCGGTGGAAGCAGCGGAAGCAATATGGTCTCC
CGCGACGACACCGCCGGCATGCACGGCATGATCGCACGTTGGCTACGGGG
TGAGTCGGAAAGGCTGGTGGTCTACATAGCGGCCGATTCTACCGCCCTTC
CTGCAGCAGATAGGGCTAGGGCGGTGCGGGCACTTCTGCACTCTGTCGGC
ATCCTCGCCGTCTTTTTCAGAGCCGCTTCGGGAGAAAACACGTGGCAGCG
TCAGCCTTATTCCTACCCCCGCCGAAAATTCAACAACCAAGAACGATGCT
GTCGCCAGTGGTGGCAACGACGGTGGCGGTGGAACCGGTGGAAGCAGCGG
AAGCAATATGGTCTCCCGCGACGACACCGCCGGCATGCACGGCATGATCG
CACGTTGGCTACGGGGTGAGTCGGAAAGGCTGGTGGTCTACATAGCGGCC
GATTCTACCGCCCTTCCTGCAGCAGATAGGGCTAGGGCGGTGCGGGCACT
TCTGCACTCTGTCGGCATCCTCGCCGTCTTTTTCAGCCACGCGTGCGAGG
TGGGGGTGGATCAGCCGGAGCTAGAGTCGACGTTGTGGGCAACAACGACT
TCCGTTGTGGATGCGCTAAAACACGCCGCGGCAGCTGCCGACTACCAGAC
GCTTTGCGAGGGCCTGGCCAGGCTGCACCGCATTGTGGGCTGTCTATTGC
GTGCGGCAGCGAACGCCTCGCCAGCTCAACATGATAACAGCGAAGAAGCT
GACCAGTCGGCTGCGGCGTTGGCTGAAGTTCTGCGATTTTGTCCACGCGT
GCGAGGTGGGGGTGGATCAGCCGGAGCTAGAGTCGACGTTGTGGGCAACA
ACGACTTCCGTTGTGGATGCGCTAAAACACGCCGCGGCAGCTGCCGACTA
CCAGACGCTTTGCGAGGGCCTGGCCAGGCTGCACCGCATTGTGGGCTGTC
TATTGCGTGCGGCAGCGAACGCCTCGCCAGCTCAACATGATAACAGCGAA
GAAGCTGACCAGTCGGCTGCGGCGTTGGCTGAAGTTCTGCGATTTTGT
back to top