mRNA_H-paniculata_contig14507.2702.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14507.2702.1
Unique NamemRNA_H-paniculata_contig14507.2702.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14507.2702.1 vs. uniprot
Match: A0A6H5KX61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX61_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 7.510e-49
Identity = 107/207 (51.69%), Postives = 124/207 (59.90%), Query Frame = 1 
Query:   25 QLEAAINRRDGCPRLSALGCHVLAFCAGAGSKRSKARA---ADGIDTRVCRTLEEIVEA-----DPRKMEAGQLVQSAQLSLGPRAQAAMALLSLLRDRQGEVAAEQERFVISWIQNLAPAERLSTPLPLLLTAIGALSRPPAHMINLARREDRWNLASDLARREGVWLHRHYAVD--ALALGGGMHKKTIDPKIVVLTWDTEQNTM 615
            +L  AI R   C R +AL CHVLA CA AG   S+ RA   A G+D         +++A     +  K EAGQL +  +L  G RAQAA ALLSLL  R GE AAE ER ++ W Q L P ERLS PLPLLL+    LSRPPAH+INLARR  RW   SD ARR+GVWLHRH AVD  A+       K  I  K V LTW TE NT+
Sbjct:   23 RLVPAIRRPGVCQRAAALACHVLAQCAAAGRGSSRGRAVRSARGLDMFAANAARALMDALRPDSEAEKWEAGQLDEDVKLPFGARAQAASALLSLLEGRYGESAAESERSIVEWAQRLKPEERLSAPLPLLLSITATLSRPPAHVINLARRPFRWKAVSDSARRQGVWLHRHEAVDWKAVEASSMSAKGWISDKEVALTWATELNTI 229
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BLAST of mRNA_H-paniculata_contig14507.2702.1 vs. uniprot
Match: D8LCR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR1_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 2.310e-47
Identity = 107/207 (51.69%), Postives = 124/207 (59.90%), Query Frame = 1 
Query:   25 QLEAAINRRDGCPRLSALGCHVLAFCAGAGSKRSKAR---AADGIDTRVCRTLEEIVEA-----DPRKMEAGQLVQSAQLSLGPRAQAAMALLSLLRDRQGEVAAEQERFVISWIQNLAPAERLSTPLPLLLTAIGALSRPPAHMINLARREDRWNLASDLARREGVWLHRHYAVD--ALALGGGMHKKTIDPKIVVLTWDTEQNTM 615
            +L  AI R   C R +AL CHVLA CA AG   S  R   +A G+D R       +++A     +  K EAGQL +  +L  G RAQAA ALLSLL  R GE AAE ER ++ W Q L P ERLS PLPLLL+    LSRPPAH+INLARR  RW   SD ARR+GVWLHRH AVD  A+       K  I  K V LTW TE NT+
Sbjct:  596 RLVLAIRRPGVCQRAAALACHVLAQCAAAGRGSSGGRVVRSARGLDMRAANAARALMDALRPDSEAEKWEAGQLDEDVKLPFGARAQAASALLSLLEGRYGESAAESERTIVEWAQRLKPEERLSAPLPLLLSITATLSRPPAHVINLARRPFRWKAVSDSARRQGVWLHRHEAVDWKAVEASSMSAKGWISDKEVALTWATELNTI 802
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14507.2702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX61_9PHAE7.510e-4951.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCR1_ECTSI2.310e-4751.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14507contigH-paniculata_contig14507:1235..5295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size618
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14507.2702.1prot_H-paniculata_contig14507.2702.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14507 1235..5295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929155.500397-CDS-H-paniculata_contig14507:1234..14531622929155.500397-CDS-H-paniculata_contig14507:1234..1453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14507 1235..1453 +
1691480752.1230867-CDS-H-paniculata_contig14507:1234..14531691480752.1230867-CDS-H-paniculata_contig14507:1234..1453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14507 1235..1453 +
1622929155.5150986-CDS-H-paniculata_contig14507:1913..20421622929155.5150986-CDS-H-paniculata_contig14507:1913..2042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14507 1914..2042 +
1691480752.1314912-CDS-H-paniculata_contig14507:1913..20421691480752.1314912-CDS-H-paniculata_contig14507:1913..2042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14507 1914..2042 +
1622929155.534125-CDS-H-paniculata_contig14507:3448..35611622929155.534125-CDS-H-paniculata_contig14507:3448..3561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14507 3449..3561 +
1691480752.145581-CDS-H-paniculata_contig14507:3448..35611691480752.145581-CDS-H-paniculata_contig14507:3448..3561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14507 3449..3561 +
1622929155.554219-CDS-H-paniculata_contig14507:5138..52951622929155.554219-CDS-H-paniculata_contig14507:5138..5295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14507 5139..5295 +
1691480752.156129-CDS-H-paniculata_contig14507:5138..52951691480752.156129-CDS-H-paniculata_contig14507:5138..5295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14507 5139..5295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14507.2702.1

>prot_H-paniculata_contig14507.2702.1 ID=prot_H-paniculata_contig14507.2702.1|Name=mRNA_H-paniculata_contig14507.2702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MGKTSHRSQLEAAINRRDGCPRLSALGCHVLAFCAGAGSKRSKARAADGI
DTRVCRTLEEIVEADPRKMEAGQLVQSAQLSLGPRAQAAMALLSLLRDRQ
GEVAAEQERFVISWIQNLAPAERLSTPLPLLLTAIGALSRPPAHMINLAR
REDRWNLASDLARREGVWLHRHYAVDALALGGGMHKKTIDPKIVVLTWDT
EQNTM*
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mRNA from alignment at H-paniculata_contig14507:1235..5295+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14507.2702.1 ID=mRNA_H-paniculata_contig14507.2702.1|Name=mRNA_H-paniculata_contig14507.2702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4061bp|location=Sequence derived from alignment at H-paniculata_contig14507:1235..5295+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAAAACATCCCATAGAAGCCAATTGGAAGCTGCAATTAACCGTCG
CGACGGCTGCCCGAGATTATCCGCTCTCGGATGCCACGTGTTAGCGTTCT
GCGCGGGGGCGGGATCGAAGCGTTCCAAGGCGCGCGCTGCGGACGGGATA
GACACGAGGGTATGTCGCACGCTGGAGGAGATAGTGGAAGCGGACCCGAG
GAAGATGGAAGCAGGGCAGGTGGGCACTTTTTTTTTTTTTCTCTGTTTCT
TTTGCTTCATTTTTTTTTTTTTTTTTGTTCTTTTTCTCTTTTGATCTATT
TTATCTCTCGTCTTGGTTTTCTTAATTTTTCATTTTCTCTTTTTTCTCTC
TTTTTTTTCAGTTTTCCATTCTTTTTGTTTCCTTCCTTGTCTTCAATTTT
TTTTATTCCGTCATGTTCTTTAATTTGTCATGTATGTATATGTATATGTA
TATGTGTATGTATATGTATATGTGTATGTGTATGTGTGTGTGCGTTTCCC
TGCTTTTCTCTCCTAGTCTTCCGCGTCTTTTTTTTTTGCTCTGTTAGCCA
TGTACCTACATCTGTCTGAGACCAGAACAGTATTCTGTATTTTCTCTGCA
CGTTTGGATGAATCCTATATGTGCAAAGTAATACCGTTTAACCTTCTCTT
TAAATCGCTCTCGTGATCTTCCCTCCTAGCTCGTGCAATCTGCCCAGCTG
TCTCTCGGACCAAGGGCTCAGGCAGCCATGGCGTTGCTGTCACTGCTCAG
GGACAGGCAAGGAGAGGTGGCCGCGGAGCAAGAGAGATTCGTAATCTCTT
GGATTCAGGTGCACACGTGAACACACTGATATGGTCATTATTTAGGCTAC
TTGTATCGCAGCTGTGAATTAGTACGGGCTGTTTCGAGTAAGTTACGTGC
TGCGAGGAGTTCATTTTTAATTTATACAAAGTACATCTCATGGCAGAGAA
TTTGATAGGTGGGACCAATTAGATGGTTTGCAGATCCTGACGGTCAGTTA
TTTGGCAAGCGATAGTATGGATCGTGATATCGGCGCTACACCGTTTCAAC
TGCTATACATGCGGTTTTTCCAACTATGACCAGTACCGTACCGTACCTTC
CCTGCGGGTAGTTGTTTTGCACAGGTTTTTTCTGCCGGTTCTTCGGTGAT
CCGTACCTTCGAGATGAAATTCACACCTATATTTGATTGATCGTCTCACG
GATGAAGATTGATTGGTTGGTTGACCGGTCGGTCGTTCCTATGTATGGAC
ATTTGCAAATATATATATATATTATATTATATTTTATATATCCCATCCCT
CAGACGACTAGAGCTATTTGCGACAACTTAAAAAAATCGTTGCCTGAGTT
GCGGAACAAACCATTTTATTGTACATGCCGCGGAAGGACCGTCTATCCAT
CTAGAGCTGCTCCGAATACTGCTGGCAAGACGAAAAGACAAGGGTGAACA
CTTTGTTCTATGTGTCATTATCCATTCCGTATGTTCTGAAATTGAGGCCC
CTATCTTCTTCAATAGTCGCAAACAGTCGTAGTCGTCCGGGGGTATATAT
ATACATATATATACATATATATATGGAGAGAGAGGTGTACCTTTATACAT
ATGAATCATGACCAAGTATATTTATAGTACATAAAAAAACAGAAAGAAGT
ATTCGCCTATGGGTTAGTTAGTTCTATTAATAGACCCCGGAAAAACTGTC
TGCGATTGACCGCTCCGAATAGTAATTCAGGGTTGGTTACATGCAAGAGG
AATAAACACGAGGGTTGGAACTCACAACATTTGATTCAGTTTTATGTGTC
ATCCTCCACTTTCTCAACCTTGCAGGCGATTTCATTATATATATATATCC
GTCCCGAATGCTAAAAATTATTCGTGTTTGTCCGGAGGAGGGAAAAAAAT
GTCACAATTTTTTTTCAACTTGTTGCACCCGACCTGACACACCGGCGGTC
TTGACAGATACCGTACCGATCGTTTGCCTTCTTTGTTTTTATTTTTTTTT
ATGTGGGAGGTTTTTAGAGTTGGCGATGAGAACCTCCGGACCGTGTGGAG
CTAATGCCTCGTTTCTGGAGGGGAGGGGGCAACATTCAGTCCATCCCACT
CGCGCTAATAGTCAGTGTTGGAGGTTGACGGCGATGTGTACACCTCTGGA
ATATGACGGATATGGTTTTTTTACGGTCTCGTACCCGTGTTTCATTCTTT
TTTTTTCTCCCCAGAATTTGGCACCGGCTGAACGCCTGTCTACACCGCTA
CCACTGCTGCTTACTGCCATCGGCGCCCTCTCCAGGCCTCCGGCGCACAT
GATCAACCTCGCTCGGCGCGAAGATAGGTAGGTCCGTAGGTAATGACGTC
ATGACTGACCTCCTTCCCACACATAAATACACACCTGTGTTGAAAAAAAA
AACGAAGGACAGTCTTGATACTGCTGGAGAGATGTGACCAAATTACCCCA
AATAAAAAAGACGCATCTCATCATTTTTTCTAGTTTTGAAGGAATTTTGC
TATTTCTGTGCCACAAGACTTGAAAAAAGCTGGTCTGACATGACGCACTC
ACTACCAAAATACACAGGACTCATAGGCAAAAAAAGTAACCCATAACTTT
AAGCTTTTTATGCTTGTAGATTGAACCCATATATTACAAAAATAAGTGAG
TTCTTAATTTTTTTATTAACTTTTTGCATTTAAGAAATATAATATAATAG
AATAAATTAATTTTAGACTCTCTATCTAGGCGATGAAAAATAGAATTTAC
TACAAAAATAAAATAAAAAACATTAAACAAACAAAATACCACAACAAAAT
ATTTTAGTTTGACCAAGGAGTAGCAAAGTACCGTACCCCATGCAATTACG
GCACACCTGCAGCGAGCGGCCTACCCCCGACCATTGACCTGGTGCATTGT
TGTACTCCAGGGCGATCGCCTCCGAGTCAAGATTTCTGGAGTATGACAAT
AGTGTGCTGATGTATGTATGTATGCATGTATGTATTTACTACAAGAAACG
GCCGCCTCCGAGTCAAGATTTCTGGAGTATAACAATAGGGTGCTGATATA
TGTATGTATGTATGTATGTATGTATGTAGTGCAAGAAACAGCCGCCTCCG
AGTCGAGAGTTTTCAGAGTATGATGACAATAGGGTACTGATTGATGTATG
TGTATAGGTACAGAACAAAATAGAGCCAGTTTTCGAGAGCACTTTCCTAC
ATGTGTTGAGTCAGAACTAACTGCACGCCAGTACAGACAAGACTTTGCAG
TCGGTGCACTACAGTACACTACATTACACTACACTACACTACATTTGTGT
GTTTCAAACACTTTTCCCGGGATTGAGATTATGTGCACGGTCGAAATCCT
CATGAGGGAGTATTCACGTCCATGTATGGGGCGTGGGGGAGAGGGGTGAA
TTTCTCCCCGCCCGCCCCGGTTCCTCTCCTTTTTGCGCCTCGTTTGGTAA
CGTAGGAAAAAGCAGTTAGCCGTAGGAGATTGCTCTGGCAGGAACATTGC
TCTGGCAGGAACATTGCTCCGTTCTATCGAGGACTACACTACATGATATC
TTCCGAAGAGTGGAAGTAGCGGAAAGGGTTTTTTGCCTGACCTTCCGGGG
GTTAAAAAAAATAAAATAAAAAATAAAAATAAAAACACTACATGATGCGT
GTACAGAACTGGATGTTTGAAGTTGTTCATAGCTGTATAGTTTTGTCAAC
ATGAGTACAGTAGAGGTAGTATATATGAGCGTCAGCGCTTGGTTGGGCTA
TCACTATGACAAGTGGGTTGATTGGCTTAGAAAATGAAAATATCAGTAGG
TGCAAGGTGAGGTTTTGTTTTAGGGATGTCAGTCGTGCACGCCTCCCTCT
CCCTCCCTCTCCTCCCAATTTTCGAACGGCGTATTTTGGTGTTGGCATCA
TGAGGTGGAATTTGGCGTCGGACTTGGCTCGAAGAGAGGGCGTGTGGCTG
CACCGTCATTATGCGGTAGATGCATTGGCCTTGGGAGGGGGGATGCACAA
GAAAACGATCGACCCCAAGATTGTCGTCTTGACCTGGGATACGGAACAAA
ACACAATGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14507:1235..5295+

>mRNA_H-paniculata_contig14507.2702.1 ID=mRNA_H-paniculata_contig14507.2702.1|Name=mRNA_H-paniculata_contig14507.2702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig14507:1235..5295+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAAAACATCCCATAGAAGCCAATTGGAAGCTGCAATTAACCGTCG
CGACGGCTGCCCGAGATTATCCGCTCTCGGATGCCACGTGTTAGCGTTCT
GCGCGGGGGCGGGATCGAAGCGTTCCAAGGCGCGCGCTGCGGACGGGATA
GACACGAGGGTATGTCGCACGCTGGAGGAGATAGTGGAAGCGGACCCGAG
GAAGATGGAAGCAGGGCAGATGGGGAAAACATCCCATAGAAGCCAATTGG
AAGCTGCAATTAACCGTCGCGACGGCTGCCCGAGATTATCCGCTCTCGGA
TGCCACGTGTTAGCGTTCTGCGCGGGGGCGGGATCGAAGCGTTCCAAGGC
GCGCGCTGCGGACGGGATAGACACGAGGGTATGTCGCACGCTGGAGGAGA
TAGTGGAAGCGGACCCGAGGAAGATGGAAGCAGGGCAGCTCGTGCAATCT
GCCCAGCTGTCTCTCGGACCAAGGGCTCAGGCAGCCATGGCGTTGCTGTC
ACTGCTCAGGGACAGGCAAGGAGAGGTGGCCGCGGAGCAAGAGAGATTCG
TAATCTCTTGGATTCAGCTCGTGCAATCTGCCCAGCTGTCTCTCGGACCA
AGGGCTCAGGCAGCCATGGCGTTGCTGTCACTGCTCAGGGACAGGCAAGG
AGAGGTGGCCGCGGAGCAAGAGAGATTCGTAATCTCTTGGATTCAGAATT
TGGCACCGGCTGAACGCCTGTCTACACCGCTACCACTGCTGCTTACTGCC
ATCGGCGCCCTCTCCAGGCCTCCGGCGCACATGATCAACCTCGCTCGGCG
CGAAGATAGAATTTGGCACCGGCTGAACGCCTGTCTACACCGCTACCACT
GCTGCTTACTGCCATCGGCGCCCTCTCCAGGCCTCCGGCGCACATGATCA
ACCTCGCTCGGCGCGAAGATAGGTGGAATTTGGCGTCGGACTTGGCTCGA
AGAGAGGGCGTGTGGCTGCACCGTCATTATGCGGTAGATGCATTGGCCTT
GGGAGGGGGGATGCACAAGAAAACGATCGACCCCAAGATTGTCGTCTTGA
CCTGGGATACGGAACAAAACACAATGTAAGTGGAATTTGGCGTCGGACTT
GGCTCGAAGAGAGGGCGTGTGGCTGCACCGTCATTATGCGGTAGATGCAT
TGGCCTTGGGAGGGGGGATGCACAAGAAAACGATCGACCCCAAGATTGTC
GTCTTGACCTGGGATACGGAACAAAACACAATGTAA
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