mRNA_H-paniculata_contig145.2699.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig145.2699.1
Unique NamemRNA_H-paniculata_contig145.2699.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Match: D8LU74_ECTSI (NUDIX hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU74_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.290e-46
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = 2
Query:   95 RVVARRTARAQCLSTAEGPQFELRQQPND--KPRKTCARCGFIVYQNPKVVCGSVLTLQDSRDGTE-LFVLGRRTIEPRSGFWGIPAGFMEMGETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM 472
            +V A+R   +   +    P FE + Q  D  KPRKTC  CGF+ Y+NPKV+CGSVLT +   DG +  +VLGRR+I+PR GFWGIPAGF+E+GET E+GAAREAREE+NAD ++G LLAVYSLPHIGQ+
Sbjct:   17 QVAAKRLRTSTAAAARPSPSFEYKVQSTDDPKPRKTCTTCGFVNYENPKVICGSVLTAKGGADGKDDFYVLGRRSIQPRRGFWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQI 145          
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Match: A0A6H5JUS4_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS4_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.490e-33
Identity = 60/87 (68.97%), Postives = 74/87 (85.06%), Query Frame = 2
Query:  215 IVYQNPKVVCGSVLTLQDSRDGTE-LFVLGRRTIEPRSGFWGIPAGFMEMGETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM 472
            I  +NPKV+CGSVLT +   DGT+  +VLGRR+I+PR G WGIPAGF+E+GET E+GAAREAREE+NAD ++G LLAVYSLPHIGQ+
Sbjct:    9 IPDENPKVICGSVLTAKGGADGTDDFYVLGRRSIQPRRGLWGIPAGFLELGETGEEGAAREAREEMNADVDVGGLLAVYSLPHIGQI 95          
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Match: A0A7Y3RKT5_9PROT (NUDIX hydrolase n=1 Tax=Parvularcula mediterranea TaxID=2732508 RepID=A0A7Y3RKT5_9PROT)

HSP 1 Score: 121 bits (303), Expect = 7.360e-32
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 2
Query:  176 NDKPRKTCARCGFIVYQNPKVVCGSVLTLQDSRDGTELFVLGRRTIEPRSGFWGIPAGFMEMGETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM 472
            +D+ RK C RCGFI YQNPK+VCGSV T  D R      +L +R IEPR GFW +PAG+ME+GE+ E GA REAREE  A+  + ++LAVYS+P IGQ+
Sbjct:   19 DDRERKVCTRCGFIDYQNPKIVCGSVATSPDGR-----ILLCKRAIEPRKGFWTLPAGYMELGESVEDGARREAREEALAELKLDRILAVYSIPRIGQV 112          
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Match: A0A845Q845_9HYPH (NUDIX domain-containing protein n=2 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845Q845_9HYPH)

HSP 1 Score: 116 bits (290), Expect = 1.200e-29
Identity = 63/123 (51.22%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  107 RRTARAQCLSTAEGPQFELRQQPNDK-PRKTCARCGFIVYQNPKVVCGSVLTLQDSRDGTELFVLGRRTIEPRSGFWGIPAGFMEMGETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM 472
            R  A  QC     G  F LR    D   R  C  CG+I Y NPK+V GSV+T   + DG    ++ RR IEPR GFW +PAG+ME+GET+E  A REAREE  AD  I  LLAVYS+P IGQ+
Sbjct:    6 RHAAALQC-DVGGGHAFTLRVPEGDTHARHVCDDCGYIHYVNPKIVVGSVVTWHGADDGEPRILMCRRAIEPRHGFWTLPAGYMELGETTEAAAMREAREEACADIRIDALLAVYSIPRIGQV 127          
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Match: UPI001666B8B1 (NUDIX domain-containing protein n=1 Tax=Aureimonas glaciei TaxID=1776957 RepID=UPI001666B8B1)

HSP 1 Score: 115 bits (287), Expect = 2.340e-29
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2
Query:  149 PQFELRQQPNDK-PRKTCARCGFIVYQNPKVVCGSVLTLQDSRDGTELFVLGRRTIEPRSGFWGIPAGFMEMGETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM 472
            P F LR   +D  PRK C  CGF+ Y+NPK+V GSV+     RD  ++ +L RR IEPR GFW IPAG+ME+ ET E+GA REAREE NA  +I +LLAVY++P I Q+
Sbjct:    4 PAFTLRTPDDDSLPRKICDACGFVAYENPKIVVGSVV-----RDAGKI-LLCRRAIEPRRGFWTIPAGYMELNETPEEGATREAREEANAALSIERLLAVYAVPRISQV 106          
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Match: UPI001A94EF8E (NUDIX domain-containing protein n=1 Tax=Jiella sonneratiae TaxID=2816856 RepID=UPI001A94EF8E)

HSP 1 Score: 114 bits (286), Expect = 3.400e-29
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  149 PQFELRQQPNDK-PRKTCARCGFIVYQNPKVVCGSVLTLQDSRDGTELFVLGRRTIEPRSGFWGIPAGFMEMGETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM 472
            P F LR   +D  PR+ C RCGF+ Y+NPK+V GSV+  +         +L RR IEPR GFW IPAG++E+GET E+GA REAREE  AD  I +LLAVY++P I Q+
Sbjct:    4 PSFSLRTPDDDDIPRRICDRCGFVAYENPKIVVGSVVRHE------RRILLCRRAIEPRRGFWTIPAGYLELGETPEEGARREAREEAEADLVIERLLAVYAVPRISQV 106          
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Match: UPI000780E0F4 (NUDIX hydrolase n=1 Tax=Aureimonas sp. AU12 TaxID=1638161 RepID=UPI000780E0F4)

HSP 1 Score: 114 bits (286), Expect = 3.400e-29
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  149 PQFELRQQPNDK-PRKTCARCGFIVYQNPKVVCGSVLTLQDSRDGTELFVLGRRTIEPRSGFWGIPAGFMEMGETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM 472
            P F LR    D  PRK C  CGF+ Y NPK+V GSV+     R G ++ +L RR I+PRSGFW IPAG+ME+ ET E+GA REAREE  AD  I +LLAVYS+P I Q+
Sbjct:    5 PSFSLRIPEGDGLPRKVCDHCGFVAYDNPKIVVGSVV-----RFGGQV-LLCRRAIDPRSGFWTIPAGYMELNETPEEGARREAREEAGADLRIERLLAVYSVPRISQV 107          
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Match: K9H0G8_9PROT (FAD pyrophosphatase n=1 Tax=Caenispirillum salinarum AK4 TaxID=1238182 RepID=K9H0G8_9PROT)

HSP 1 Score: 114 bits (285), Expect = 3.990e-29
Identity = 55/109 (50.46%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  146 GPQFELRQQPNDKPRKTCARCGFIVYQNPKVVCGSVLTLQDSRDGTELFVLGRRTIEPRSGFWGIPAGFMEMGETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM 472
            GP  E   + +++PR  C  CGFI Y+NPK++ G+V+T  D       ++L RR IEPR GFW IPAGFME+ E++E GAARE  EE  A+  +G LL VYSL HI Q+
Sbjct:   10 GPVVERVPEGDERPRMVCDDCGFINYENPKIIVGAVVTWGDK------YLLARRAIEPRKGFWTIPAGFMELNESAEAGAAREVMEEAQAEVEVGALLGVYSLHHINQV 112          
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Match: A0A840I1H6_9PROT (ADP-ribose pyrophosphatase YjhB (NUDIX family) n=1 Tax=Parvularcula dongshanensis TaxID=1173995 RepID=A0A840I1H6_9PROT)

HSP 1 Score: 114 bits (285), Expect = 4.320e-29
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 2
Query:  149 PQFELRQQPNDK-PRKTCARCGFIVYQNPKVVCGSVLTLQDSRDGTELFVLGRRTIEPRSGFWGIPAGFMEMGETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM 472
            P F   + P D+  R  C RCG++ YQNPKVV GSV +   S DG  L +L RR IEP +G W +PAG+MEMGET E+ A REAREE  A+  + ++LAVYS+PHIGQ+
Sbjct:   14 PAFVRTRPPGDEHERDVCTRCGYVAYQNPKVVAGSVAS---SPDG--LILLCRRAIEPAAGLWTLPAGYMEMGETVEEAARREAREEAGAELELERVLAVYSVPHIGQV 117          
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Match: A0A257QYY5_9PROT (NUDIX hydrolase n=1 Tax=Rhodospirillales bacterium 20-60-12 TaxID=1970565 RepID=A0A257QYY5_9PROT)

HSP 1 Score: 113 bits (283), Expect = 6.250e-29
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  149 PQFE-LRQQPNDKPRKTCARCGFIVYQNPKVVCGSVLTLQDSRDGTELFVLGRRTIEPRSGFWGIPAGFMEMGETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM 472
            P FE L  + +   R  C RCGFI YQNPK+V GSV+  Q      E  +L RR IEPRSGFW +PAG++E+ ET ++GAAREA EE NAD +I  +L VYS+PHI Q+
Sbjct:    6 PAFENLIPEGDHLERAVCTRCGFIDYQNPKMVVGSVIATQ------ERILLCRRAIEPRSGFWTVPAGYLELHETPDEGAAREAAEEANADISIEGILGVYSIPHISQI 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig145.2699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU74_ECTSI2.290e-4659.69NUDIX hydrolase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JUS4_9PHAE1.490e-3368.97Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7Y3RKT5_9PROT7.360e-3257.58NUDIX hydrolase n=1 Tax=Parvularcula mediterranea ... [more]
A0A845Q845_9HYPH1.200e-2951.22NUDIX domain-containing protein n=2 Tax=Pyruvatiba... [more]
UPI001666B8B12.340e-2955.05NUDIX domain-containing protein n=1 Tax=Aureimonas... [more]
UPI001A94EF8E3.400e-2953.21NUDIX domain-containing protein n=1 Tax=Jiella son... [more]
UPI000780E0F43.400e-2955.96NUDIX hydrolase n=1 Tax=Aureimonas sp. AU12 TaxID=... [more]
K9H0G8_9PROT3.990e-2950.46FAD pyrophosphatase n=1 Tax=Caenispirillum salinar... [more]
A0A840I1H6_9PROT4.320e-2954.13ADP-ribose pyrophosphatase YjhB (NUDIX family) n=1... [more]
A0A257QYY5_9PROT6.250e-2954.13NUDIX hydrolase n=1 Tax=Rhodospirillales bacterium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig145contigH-paniculata_contig145:39433..47051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue1e-37
Seed eggNOG ortholog2880.D8LU74
KEGG rclassRC00002
KEGG koko:K18453
KEGG ReactionR00160,R01054
KEGG Pathwayko00230,ko00740,ko01100,map00230,map00740,map01100
Hectar predicted targeting categorymitochondrion
GOsGO:0000041,GO:0003674,GO:0003824,GO:0004551,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008152,GO:0008324,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0015075,GO:0015318,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0022857,GO:0022890,GO:0030001,GO:0032879,GO:0034220,GO:0034641,GO:0042221,GO:0042592,GO:0042726,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046873,GO:0046915,GO:0047884,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0061088,GO:0065007,GO:0065008,GO:0070838,GO:0071577,GO:0071704,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901360,GO:1901564
EggNOG free text desc.NAD diphosphatase activity
EggNOG OGsCOG2816@1,KOG3084@2759
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-16_000490.1
EC3.6.1.13,3.6.1.18
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size475
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig145.2699.1prot_H-paniculata_contig145.2699.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig145 39494..47051 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929155.0653567-UTR-H-paniculata_contig145:39432..394931622929155.0653567-UTR-H-paniculata_contig145:39432..39493Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig145 39433..39493 +
1691480751.8878105-UTR-H-paniculata_contig145:39432..394931691480751.8878105-UTR-H-paniculata_contig145:39432..39493Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig145 39433..39493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929155.082301-CDS-H-paniculata_contig145:39493..396531622929155.082301-CDS-H-paniculata_contig145:39493..39653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 39494..39653 +
1691480751.8987873-CDS-H-paniculata_contig145:39493..396531691480751.8987873-CDS-H-paniculata_contig145:39493..39653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 39494..39653 +
1622929155.0990028-CDS-H-paniculata_contig145:45530..456561622929155.0990028-CDS-H-paniculata_contig145:45530..45656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 45531..45656 +
1691480751.9082928-CDS-H-paniculata_contig145:45530..456561691480751.9082928-CDS-H-paniculata_contig145:45530..45656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 45531..45656 +
1622929155.1170404-CDS-H-paniculata_contig145:46923..470511622929155.1170404-CDS-H-paniculata_contig145:46923..47051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 46924..47051 +
1691480751.9204688-CDS-H-paniculata_contig145:46923..470511691480751.9204688-CDS-H-paniculata_contig145:46923..47051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 46924..47051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig145.2699.1

>prot_H-paniculata_contig145.2699.1 ID=prot_H-paniculata_contig145.2699.1|Name=mRNA_H-paniculata_contig145.2699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MMIIHSISSAFRVVARRTARAQCLSTAEGPQFELRQQPNDKPRKTCARCG
FIVYQNPKVVCGSVLTLQDSRDGTELFVLGRRTIEPRSGFWGIPAGFMEM
GETSEQGAAREAREELNADANIGKLLAVYSLPHIGQM*
back to top

mRNA from alignment at H-paniculata_contig145:39433..47051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig145.2699.1 ID=mRNA_H-paniculata_contig145.2699.1|Name=mRNA_H-paniculata_contig145.2699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7619bp|location=Sequence derived from alignment at H-paniculata_contig145:39433..47051+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATTGGAAATCTGATTAACGTAGAGCATCTGCGGAAGCTACTGCTGGTG CCACCCCATAGATGATGATAATTCACTCGATATCCTCTGCATTCAGAGTA GTAGCGAGGAGAACAGCTCGTGCGCAGTGTTTATCAACAGCGGAAGGCCC TCAGTTCGAGCTGAGGCAGCAACCGAACGACAAACCTCGCAAGACTTGTG CGCGCTGCGGCTTCATTGTCTGTAAGTCTGAAGTAGGGAATATGGTGTGC CTGCTGTCTCTCTGCGTATAGCTTACTGCTGTATTGTCTGGCTTACCTTG ATTCCGCGTATAGCGTGGTATATTTCTGCAGAAAATTGCACTGCAGAGGT AAGCCAGTCTACCTCCTCGCTCCTTTGGTCGCTTAATTCGGTGCCTCCTG TGCGATATATGATGACACATATTTTCAGTCATCACAGCTGACAGATGTAT CAAACAGTAAAGTGAGTGCTGTACCCAGTAATCAGTGATACAGTACGGGC CCGCTGACAAGATATCGCTCGATAATAATTTGAGGCTCAAATTTACTCAA GCATGAAGAAATGGTCCTCACATTGTGGCCTAATACTAATTCCTCTATAA AAATGAGAAACATTACCGTTCGTGATTCTCGCCGAAGGTTTTGAGCCTCA CCCGAAATATGAGTTTCATATCATCGCGCTCATACTGTACTGTAGGAAGG CTATGCTTGCAGAAACTTGAGTAGTTGAAGACCTACAAATCGTTCCCCAC ACGCGGCAGCTTCTAAGCGAGAAAAACCATTCACTACACCACGGCAGCCA GATATAGTTACAGTATGTAGGTGTGATATAAAGCTGGTTGTATCGAAATC GATAAAAAAATGACCGTAAACGACAGTTGGTTGGGGGATACGACGGGGGG CGGTTGACTATTTTCCCAAGGGGTCATATTCCACCGCGTGCCAGTTTAGC CCTTACATACAAGTAGCTGGTCGTGCTCCTAGACTCTTTCACACATCGGA CGGATGCTGTAGATGTGTAGCCGGTAGCTTGTAGTTGCGAAGCTGCGCGC CCGTGAGAAAACTATAGAGATGGGGGAGAGGGGGGAAGGACATGCGTTTT GTTCAGGTGGGAATCAGGTTGACACAGGCGACGGTTAACCAGCCTAGTAT TCTCTCTCTCTATGTGACATGTAGAGTAGTAGTTATTGTACCATGTACCC ATAATGCATATGTGACGTAGTATCCGTACATGTGATGTCCACAGGTGATG CGTTGCCTAGGCACCATCAGTACATGGTCGACTGCCACCGATGCGTATGA TACGGAGTGCACGGGTCTTGACTCATTTCCCCCTAACCCACGGGCTCGTC TCCATCACACGTGAAAAATATTTCAAATATTTGAAACTACCTGCTTCATG TTAAATTCGTCTACGCTTGGCTTCGCATCAGACCCTGGCTCCTCATGCTC CTCCGTTCCTTCCAACAGTTGCTCTACAGCTTGCAGAGGATTCGATAGCC GTTTCGGTACTTCGTCTATTGCCTCCCTCTTTTGTCAGGACCGATACCTC CGTGGGGATGTCCGCCAGGGTGCCATTCAGACACAACACCGTCCGAGTGA ATGCTGCATCCAGACGGCTACGGCACCCCGTGATGAGCCGTCCTACGGTA GTAAAGTCCCGCTCCAGAACGGCAGAAGACACCGGGATGGACAGCAAGAC TCGAGCTGCGCGCGCCAGCAGGGGTGGGCAGGCGCACCTTCTCTTAATCC CAGTACTTAAGCACGAGTAAAACCGGTCTGGTGATGAGACTCTCCTTCCT TCCTTTGGCCACGCAGGTCTCGAACTCCTCCGTGCACAGCTCCATCCATG TTTTCGCCGCCGGCAGCACCGGGCCGTCGGCGACGTCGCTAAACATGCCG CTGGCCGTCAGGTGGGCCGCTTCATCCACCGCAGCCTTCTTCGACAGGAC AGTCACAACGTTGCTGGGCCCCGTTTTGCGCTCTTTCTGCTTCGGTGCAG AAGCGGCGCTCGTTGCTGGCTCACCCGCGGCGGCGACTCCGTGGTTTGCT CTCTGGTCTTGATCGCCCAATGCAATCCGTTCGGCCATCTCCGTCATCAG GTCGATTACGTTCCTCTTGACAATTCCCCGCACGCGCTCTGCCTCGGTGG CGCTACTGCAGACGGCGAGCAGGAAAGGCGTCGACGAGGAGGACGGGTTC ATGCTCGCCGTCATCTCCCACAGGTAGCCCACGTCAGCCACTGAAAAGCT CGCGTTATAGCGCTTGTGGAAGAAGTGCCTATCGAGTGCGACATCCAACT TCTTTCGAGTGAGCTTCGCTACGTCCTGCAGTGCGGTTGCCTCCCGAACA ACCATCGATGGTGCCGCGGTGATCCGCTGGGCATCTACCTCTAGCTTCTT CCTCGGGGACTGAATCAGGAGCGGGTTGCCTTCCTTCAGGACGGACGTTT TGAGGGCCATGATATCCTGGAGAGTGACCACACCTATCGGCACATCTGTC TTCTGATTGTTCTTGATCAACATGGCTGTCGGCTTGATCAGAGAGTAGAG CTCCTCGATACTGTCTTCACGGAAGCCAATGGGAATGCCAACGACTCTCA GGACATCAGGACAGTGTCGAACCTCTTGCATGTAGAAATCCAGCGATGGG GCGCTGCATTCAGGAGCTTTGAAGAGAAGCCGTACAGGAAGTTTTGCACA CGTTCAAACTTCACCTTGCACAGATAACATGGGGTTCGTAAGTGGAACGT GTGCTGTTGCCACGCACTTGGGGTGAAACCTAGCATCACGCACTGCACGG TGCTACAATGTATTATATCATCGAAAGATGAACACCAAAAAAATGAGAAT ATGAATACAAAAAATATATCTGAAGAAATCTCAAGGATAACCAGGGTATG AGGCGCGGTAGGATAAGTTTGATACAGCATGAACCGGACAAGTTCCTTCA ACCAGTCAACTCTGTTGAACTTATAATATTCCAAGCGACCTCAACCAGGC AGGGAGGCAACAGTGACCTACGCGAGACGTTTCACCAGGTCTACCATGCC AGATAGAAAGCAGTCATACCGAGCGCGCACGAACCTTGGAGTTCGGAGGC TTGTTGAGATGCTGGACAAACATCTATAACCGCACGCGCCTCTTTGTTCT TGCAGGTGGCTCTCGACGCATTCATCCCAAAAGCCTGACGAATGAATTGG AATGATCAAACCTTAGCTTCACAAAGGTTAGGGGTGCTGGCAGGACGGAG TGCCCACCTGAGTGAGGAAAGTGGAATGCACGGCATGAATAGAACAAACA GCATCAACTGGACATACACGTCGTTTTCTTCTTTTTTATTCCCCGGGAGA CCAGGGCGAAAGCTGTTATGATACTTCTACTGGGAATGTACATATCGCGT TGTTTCATCTCATGTCAACATCGATAGCAGTAGGACACGTCATCCCGAGA CCGAACATGCATCTCCAACTTACGCCTGAAAAGGCAGCGCGTTTCGACGA ATCCCCGCCAACAGTCACAGCGACTACTACCAGAAATTTACCCATGGCCT TACCCGCAAAAATCAATTACACAAGAGGACATATTTAATGTGTTTCCGCG GTGGAGGATCACACGCTACAAACTGGGTCGGGCTTGTTCAGCTTTTGATT AGTACATTGTACAAGAACACTGCGGGGGAAGCATCGTTCCTACCTGGATG ACGGCACGTTCAATCAAGCACTGGCGCTTGGCATCAGATCCAGCATCCGT CACGGTGGAGAACAAGTCGGTTTCAGTCAGACCATACTCCGCCAGCACAT GATGAACCCAGAGAAACAAGACGTCTGAAAGGATGATGCTGTAGCTCAGT GAGGATGCTGGCCAAAAGAGGCTTGAGGAGAATTGACTACAAGATGAAAC AGCTGGTCATTCAGTACACCCGAAGACGTCTAGCACACACATACCAGAAG TGGGCGAGTCGGCGGGTCGGTATGCGCAGCACTATTGGCACCTGAGACTT CAGCATTCACTGACAAGGAGCAGCGTTTTTCTGTTCGACGCCGTGTTTTT TGTATTTTCAATTTTGCACAACGAAGCAGCGTCCTCACGGTATCTTCAAC AAGATACAAGAAAATCGAGAAAAGAGAAGCCCGCAAAATCAAGCATCGAA AATATAACTAGCTCCTGCTATATCCACACGCAAAAAAATAATAATATGCG AGACAAAATAACAGGCACGCCAGCGGGCAAATATATAAATATTCATATTC CAAGCTGGAGCGTACCATAACACCGCACCTACACATGCACACAAGGCAGA CATGGCAGGGAATACCAACATCCCGAACATGAAGAACCCCAACACTACAA GATAAATTACGTGTATATACTCCTTGACACGGAAAAGATGCCAGCGCACA AGACAGACACGGCCGGAACATATGTACTCGAGTGTATACACTACTACGGA CTAACGTATAAAACAATACGCAATGTAACGGCATACAAAGGGAGGGTGGT CCGTTTTCCTCGCCGGTGTATTTCTCGTTGGACATCTCGCTCGTCCATCG ATCGAAATTCGCGAAAAGTAGCGGCCCCCAACTCCCCTTCAGAGCTTCCA ACACATACCGTCGAAACCGCGACCGTTGCAGAGCAGATCTTCTTAATGAG ATGTTTGATGCGCTTCGCGTGCAACGCACTGGGGTAGTCGGCCGCGCACG CCACGGCGAAAAACAGCCAAATGTCCACGGGAATTAGGAGGGCCTAAACG CAAATTGCGTATTTCCATATATCAAATTATGCCCGGACTCACACAATCGT CAGTGCTGACGGTAGGTGATGATAAGGGTCCTAGCCTGTGCAGCTATGTA GCCGGCGGCGGTGTTGGGGTTGTTGCCGAAAAATAAACTTCGGTAACATA TATCTATATCTATATCTATATATATGTAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAAATTACTCAGGCGCAACACTAAAATACCCCCC TCACACAAGGATTGGTAATGCAAACCTTTATACATGTAGTCCTATAGCAC TGGGCCACCGATATCGGACAGAGCTGATGCGAAAGACGCATGTTTTGCGC GTGAAATCATGGTCTTCCGTCGAAACAAACTTGCTTTTTAGCTACGGATA TTTGTCCGGCCGGGAACGGTAGACGCTTACAGCTTGCATTGCGTGCATAC CTTTTCAGTCTCCTAAATATACTTAGTGATGATTATGAAGACAGCTCCAC ATATCTGATTTATTACTCTGAAAAAAATGGAATTCTACATATTTGAGCTG AATCCCAAATTTTGGGTCAAATGGTTAACTTTTACCGCCAAAATACGTGC CGTGAAAAAAAATTATTAGGCTGAATTGATTGCAACCAACACGTTCGGAT GTCTCTCTGTCTTTGATACTTTGACACTGAAATCAGTGTGCTAATTGTGT CGGTACACTACAGTCAGTACAATAGCCTAACGTGAGTGTCGTAAGCCTCG TTGTTTAATGTAGTTTGCCGAAACGGTGTACAGAAGTAGCGCTGCAAACC ACCAATTCCGTCCGCAAAGCACGTGCAACATATATACAGGTATGCTGTTG ACCTAGAGCCCACCACTCTGTCCGCCTTAGCAGCAGCACGAAACATATTA GTCACGCGGCACCACAGTGCTCTACACACGAAGTGAACATGAGCTAGCCT ATCAACACTGTCATTTCTAGTCCTAGCTATGTCTTGTATAGAGAGTACTT ACACCCCGGCGAATATTTTTGTTCACACTGCGGTAGTTAAGTGGATTTTT CCATACAAAAAGTACAAGATCATACATGGTTCCACACTCTAGACCTTGAC CTTTTTCTGCTTTGGACTCATAGCAATACAGTTGAGACATTGAACATTCA ACCCTTTTTTCCCACGAAGATGTGATGGACCTTCGTGCGATCAAATCTGA CGGGTTTCGAAATGCAGACGCGGATCATCTTTGGTGTTGTGATCATTCCA AACTCCGCGACGGCTGCACTGATCCTTCGCTCATCCTACTTGCTGCACTA AATGCTATTTGCAACTCCTCACGGAATATCTTGGTACCGTTCGCGCAGAC CAAAACCCGAAGGTGGTGTGCGGATCAGTGCTGACATTACAAGATAGCAG GGATGGCACGGAATTGTTCGTGCTTGGGCGGCGTACAATCGAGCCGCGCA GCGGATTTTGGGGAATTCCAGCAGGTACGGTGGTCTGCCTGGCCTGCCTC GAGGGCAGCTTAACAAAATTACAGAGCCGTTGTGCCTTAAAGTGGTTTCT GTACTGTATGCCCCCAGTGTTTGTGAGTAACGGAACACCTCTTCATCTCG CATTGGGTGTGAAGCAAAAGTAAAGTCATCGGTATCAGATTGTAGCCGTG CAGAGCGAGGGTGAGGTAAGTGCACGTGAATGGAACAATACCTCATTGCT GCGGGGGGGGGGGGGATGTCGCAGCTGATGTGAATAGACCAACAAAGCCC GTGTTCGCTGCTGAGCGGGTCTGGGCAAGATCCAATTTTCTTACAGCCAG CGTCAAGTGTTGTATGTAGAACGACTCTGCCATGAAGAGGAGCGGAAGGC ACGGCCTTACCATTTCAGCCGCAAAGTGTTGCGCATGAAAATATCCCTGA GCATCGGATGCTTTGTATAGCCGGACTCTTCCACGGAGCTGCTACTAAAG TCCGACCGGTACACTGTCAATACTGGAGCTACAGCAAAATCCTTTGATAT CGCACCCCTACGCTGCTAGCGCACCATTTTCGACAATGCACAGGGTGCGA GCAGTGTGCACTCGTTCTTTGTCTAGCATGTTCCGTCCTTGAGAAGGCAC CCGGTGCGTCCTCAAGGCGCACGCTCCCTCGGTGATGGGAGCACTCGTGT GGGTCTTCCAGAATATGCTGTTGGGGCAAGCCTTGCTAACGCCTGTATGG GTTTCGGTCCGATGGTGTCGAATTTGCGGGCATTATAGAAACGTGCATGA CAACCCATACATATACTCTTCTGTACAGGTATTGTTTTGTGCAAAGTCTT GTCTCTGTATGCACGGTTATTCCGTCAGTATACCTTGGACAGGATTTTGA TTATTTAGGCTCGTACTACTTTCTGCTAGTACCCCGTTACCATCGCTCCT TCAGCGTATCGCCGGGTGTGCTTTGGTGCGCGAGCCCACACAGACTTAAG TGTCGCTAATGCTTGGCGATATTGTCAGAAACATCTTTTCTTCGTATCCT TATCCCGACGTTCCGTGGTGCTTTGTCGCTAGCTGGGCACACCGCTCAGT GGCCACTGAATATACATCGTATCGAGCGGTTTCCTGCACGCGATCGTCTT CCTTGGCTTGTTTGCCTATTTGATTTTTGCTGTATCAAACACGAAGTGAC TGACGCTAGTGTAGATGCACCTCTTTCAACTGGCTGGAATATTTTGTTCT GCTCTGATGTTGTCCCACCCTGAACCCTGTAATACTGGAAGGTTTTATGG AGATGGGGGAGACGAGTGAACAGGGAGCGGCGCGGGAGGCTCGAGAAGAA CTGAATGCTGACGCCAACATAGGGAAGCTTCTGGCAGTATACAGCCTACC TCACATTGGCCAAATGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig145:39433..47051+

>mRNA_H-paniculata_contig145.2699.1 ID=mRNA_H-paniculata_contig145.2699.1|Name=mRNA_H-paniculata_contig145.2699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig145:39433..47051+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGATAATTCACTCGATATCCTCTGCATTCAGAGTAGTAGCGAGGAG
AACAGCTCGTGCGCAGTGTTTATCAACAGCGGAAGGCCCTCAGTTCGAGC
TGAGGCAGCAACCGAACGACAAACCTCGCAAGACTTGTGCGCGCTGCGGC
TTCATTGTCTATGATGATAATTCACTCGATATCCTCTGCATTCAGAGTAG
TAGCGAGGAGAACAGCTCGTGCGCAGTGTTTATCAACAGCGGAAGGCCCT
CAGTTCGAGCTGAGGCAGCAACCGAACGACAAACCTCGCAAGACTTGTGC
GCGCTGCGGCTTCATTGTCTACCAAAACCCGAAGGTGGTGTGCGGATCAG
TGCTGACATTACAAGATAGCAGGGATGGCACGGAATTGTTCGTGCTTGGG
CGGCGTACAATCGAGCCGCGCAGCGGATTTTGGGGAATTCCAGCAGACCA
AAACCCGAAGGTGGTGTGCGGATCAGTGCTGACATTACAAGATAGCAGGG
ATGGCACGGAATTGTTCGTGCTTGGGCGGCGTACAATCGAGCCGCGCAGC
GGATTTTGGGGAATTCCAGCAGGTTTTATGGAGATGGGGGAGACGAGTGA
ACAGGGAGCGGCGCGGGAGGCTCGAGAAGAACTGAATGCTGACGCCAACA
TAGGGAAGCTTCTGGCAGTATACAGCCTACCTCACATTGGCCAAATGTGA
GTTTTATGGAGATGGGGGAGACGAGTGAACAGGGAGCGGCGCGGGAGGCT
CGAGAAGAACTGAATGCTGACGCCAACATAGGGAAGCTTCTGGCAGTATA
CAGCCTACCTCACATTGGCCAAATGTGA
back to top