prot_H-paniculata_contig145.2696.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig145.2696.1
Unique Name	prot_H-paniculata_contig145.2696.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	1017

Homology

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BLAST of mRNA_H-paniculata_contig145.2696.1 vs. uniprot
Match: D8LSX8_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX8_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.710e-31
Identity = 97/232 (41.81%), Postives = 118/232 (50.86%), Query Frame = 0

Query:  643 RRASVAGSPSAPSPISVRERAASKDSGVVTAQCEFCLRRYLRSAMSNHLEVCELRLVRCPYQCGVRILVHNIEKHEKCCSLRPT-HSSTVARSSERAISSDLSTSTAPAAXXXXXXXXSTAAIGQAPQRPXXXXXXXXXXPANITKPPTRAGTVQDGNTSEAEAEKLKKTQLTSSSR------DTPSTVTCMRCHESLPFHLVPAHGLKCKGQV-RGSIPGTHHGVSPQHTS 866
            RR SVA   + P+P+S R+R+ASKDSGVVTAQCEFCLRRYL+SAMS HL+VCELRLVRCP+QCGV++LV N+EKH   CS++ +  S  V  +S  A                     +TA     P                      + G +  G   E                      D   TVTCMRCHESLPFHLVP+HG KCKG+   G +       SP  TS
Sbjct:  711 RRKSVAAVSTGPAPVSFRDRSASKDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESVESGGVVDASATAT--------------RVRNLDATAGTRVEPHNETTRKKGDELASHGDEANAQQGGALAIGPGPEPXXXXXXXXXXXXXXXXXXXXXDAGRTVTCMRCHESLPFHLVPSHGPKCKGKKGEGELGARATAASPSGTS 928

[Close]

BLAST of mRNA_H-paniculata_contig145.2696.1 vs. uniprot
Match: A0A6H5L2E5_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E5_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.250e-25
Identity = 78/189 (41.27%), Postives = 98/189 (51.85%), Query Frame = 0

Query:  666 KDSGVVTAQCEFCLRRYLRSAMSNHLEVCELRLVRCPYQCGVRILVHNIEKHEKCCSLRPT-HSSTVARSSE-----RAISSDLSTSTAPAAXXXXXXXXSTAAIGQAPQRPXXXXXXXXXXPANITKPPTRAGTVQDGNTSEAEAEKLKKTQLTSSSRDTPSTVTCMRCHESLPFHLVPAHGLKCKGQ 848
            +DSGVVTAQCEFCLRRYL+SAMS HL+VCELRLVRCP+QCGV++LV N+EKH   CS++ +  S  V  +S      R + +  ST   P            A+ G+  +            P                  ++                    TVTCMRCHESLPFHLVP+HG KCKG+
Sbjct:  933 QDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESAESEGVVNASATPTRVRNLDATASTRAGPPNETTRKKGDEHASHGETDEGNARQGGVLAIGPXXXXXXXXXXXXXXXXXXADR-------------------TVTCMRCHESLPFHLVPSHGPKCKGK 1102

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig145.2696.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig145.2696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LSX8_ECTSI	2.710e-31	41.81	SAM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L2E5_9PHAE	1.250e-25	41.27	SAM domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 664..724 e-value: 4.7E-7 score: 31.4
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 674..727

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig145	contig	H-paniculata_contig145:25138..32005 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig145.2696.1	mRNA_H-paniculata_contig145.2696.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig145 25138..32006 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig145.2696.1 ID=prot_H-paniculata_contig145.2696.1|Name=mRNA_H-paniculata_contig145.2696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1017bp
VEERLSAFEQSVADSIDNTTNNGEHAKEEMTHYMKRLVCSTQREVFQDIA
DKVTAAVKVETDMRTAARIEVEKLGREAALSLLKQQLEASCHNLESAWAT
QSHRDAEIWKELSGIQCHLRHALAAAEGRQTTTDKHLSGVEGIHRASERI
AAQLCQEKLAPKEPCRLSYPKLPQTTEILAAISSGSHTSKATSNNNVSIC
SSPAAAGEGRSPEIRVCRGDIPKVPDTTTGLASESPHPVKTSRAEHTPSD
VKVPAAADVTNGDLSRPLDPSSFLTSPFVCEKRKPTNVSSSKQHTHGHEG
NAESSKCVTESLAREATSNSRDIAKSNDVVERGCDIGCMSYIQAGLNSSD
GNKPTKEAPPGLPAGTPLLPMTSSDTRPRRNVEVMEPAPKLSKAVESVVT
AISESHVATTCALPSLPRPDNRNSEYPHNVSSIMGAGSSTVDSKTHWDVP
GRLNDAIPETQRTLQATGASAYVEPSTPKTSLSAISLLQTLDGIGRTQES
TEVSKAGSNSSSNSNDDTDRGVNVAAAAVGTTEAIPATFVSPSHSRRAAC
TSAEAASGSSSSSFSADGSTAEVMKEERRGEERKSLSGAQGNVAASNTNT
GSCKTRDNREGGNNMNDRVIAVDVKGTTAPPPNSSATTGQGARRASVAGS
PSAPSPISVRERAASKDSGVVTAQCEFCLRRYLRSAMSNHLEVCELRLVR
CPYQCGVRILVHNIEKHEKCCSLRPTHSSTVARSSERAISSDLSTSTAPA
ASPSTSPTMSTAAIGQAPQRPPLPPPPSPPPPANITKPPTRAGTVQDGNT
SEAEAEKLKKTQLTSSSRDTPSTVTCMRCHESLPFHLVPAHGLKCKGQVR
GSIPGTHHGVSPQHTSHDASLLPSSISAAAKPDSIAGAAGTARDVRSAVD
MFDPQSSSLATTTRVAESKAMKGKMNSFLPLPPRFPANGASPTASLEMGV
PWGKGGEQPPTVSRGNLPPRSAFPYPSGLGIVSDLGSALKGGKNNPGSLI
SGLRVPSPLPRPKKVDL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR008974	TRAF-like