mRNA_H-paniculata_contig145.2696.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig145.2696.1 vs. uniprot
Match: D8LSX8_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX8_ECTSI) HSP 1 Score: 144 bits (363), Expect = 2.710e-31 Identity = 97/232 (41.81%), Postives = 118/232 (50.86%), Query Frame = 1 Query: 1927 RRASVAGSPSAPSPISVRERAASKDSGVVTAQCEFCLRRYLRSAMSNHLEVCELRLVRCPYQCGVRILVHNIEKHEKCCSLRPT-HSSTVARSSERAISSDLSTSTAPAAXXXXXXXXSTAAIGQAPQRPXXXXXXXXXXPANITKPPTRAGTVQDGNTSEAEAEKLKKTQLTSSSR------DTPSTVTCMRCHESLPFHLVPAHGLKCKGQV-RGSIPGTHHGVSPQHTS 2598 RR SVA + P+P+S R+R+ASKDSGVVTAQCEFCLRRYL+SAMS HL+VCELRLVRCP+QCGV++LV N+EKH CS++ + S V +S A +TA P + G + G E D TVTCMRCHESLPFHLVP+HG KCKG+ G + SP TS Sbjct: 711 RRKSVAAVSTGPAPVSFRDRSASKDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESVESGGVVDASATAT--------------RVRNLDATAGTRVEPHNETTRKKGDELASHGDEANAQQGGALAIGPGPEPXXXXXXXXXXXXXXXXXXXXXDAGRTVTCMRCHESLPFHLVPSHGPKCKGKKGEGELGARATAASPSGTS 928
BLAST of mRNA_H-paniculata_contig145.2696.1 vs. uniprot
Match: A0A6H5L2E5_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E5_9PHAE) HSP 1 Score: 126 bits (316), Expect = 1.250e-25 Identity = 78/189 (41.27%), Postives = 98/189 (51.85%), Query Frame = 1 Query: 1996 KDSGVVTAQCEFCLRRYLRSAMSNHLEVCELRLVRCPYQCGVRILVHNIEKHEKCCSLRPT-HSSTVARSSE-----RAISSDLSTSTAPAAXXXXXXXXSTAAIGQAPQRPXXXXXXXXXXPANITKPPTRAGTVQDGNTSEAEAEKLKKTQLTSSSRDTPSTVTCMRCHESLPFHLVPAHGLKCKGQ 2544 +DSGVVTAQCEFCLRRYL+SAMS HL+VCELRLVRCP+QCGV++LV N+EKH CS++ + S V +S R + + ST P A+ G+ + P ++ TVTCMRCHESLPFHLVP+HG KCKG+ Sbjct: 933 QDSGVVTAQCEFCLRRYLKSAMSTHLQVCELRLVRCPFQCGVKVLVRNLEKHMGSCSMKESAESEGVVNASATPTRVRNLDATASTRAGPPNETTRKKGDEHASHGETDEGNARQGGVLAIGPXXXXXXXXXXXXXXXXXXADR-------------------TVTCMRCHESLPFHLVPSHGPKCKGK 1102 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig145.2696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig145.2696.1 >prot_H-paniculata_contig145.2696.1 ID=prot_H-paniculata_contig145.2696.1|Name=mRNA_H-paniculata_contig145.2696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1017bp VEERLSAFEQSVADSIDNTTNNGEHAKEEMTHYMKRLVCSTQREVFQDIAback to top mRNA from alignment at H-paniculata_contig145:25138..32006+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig145.2696.1 ID=mRNA_H-paniculata_contig145.2696.1|Name=mRNA_H-paniculata_contig145.2696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6869bp|location=Sequence derived from alignment at H-paniculata_contig145:25138..32006+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig145:25138..32006+ >mRNA_H-paniculata_contig145.2696.1 ID=mRNA_H-paniculata_contig145.2696.1|Name=mRNA_H-paniculata_contig145.2696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6102bp|location=Sequence derived from alignment at H-paniculata_contig145:25138..32006+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |