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Homology
BLAST of mRNA_H-paniculata_contig14478.2689.1 vs. uniprot
Match: D8LCW3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW3_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 2.240e-12 Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1
Query: 1 VDEAGLLVLSAGQVKRGLRFCMKVHRFREMCRGGSCVTVWKRWAIAADALEELYPGLS 174
VD A L+A +V+R +RFCMKVHR+RE+CR GSCV KRWA AADALEEL PG S
Sbjct: 741 VDSAERPWLAASEVRRAMRFCMKVHRYREICRPGSCVAFRKRWAYAADALEELCPGAS 798
BLAST of mRNA_H-paniculata_contig14478.2689.1 vs. uniprot
Match: A0A6H5KG66_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG66_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 2.930e-12 Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1
Query: 1 VDEAGLLVLSAGQVKRGLRFCMKVHRFREMCRGGSCVTVWKRWAIAADALEELYPGLS 174
+D A L+A +V+R +RFCMKVHR+RE+CR GSCV KRWA AADALEEL PG S
Sbjct: 706 IDSAERPWLAASEVRRAMRFCMKVHRYREICRPGSCVAFRKRWAYAADALEELCPGAS 763
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 62.4 |
| Seed ortholog evalue | 5.3e-07 |
| Seed eggNOG ortholog | 2880.D8LCW3 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Pleckstrin homology domain. |
| EggNOG OGs | 28P6I@1,2QVTE@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 1441 |
| Cds size | 1146 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14478.2689.1 >prot_H-paniculata_contig14478.2689.1 ID=prot_H-paniculata_contig14478.2689.1|Name=mRNA_H-paniculata_contig14478.2689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=382bp
MKVHRFREMCRGGSCVTVWKRWAIAADALEELYPGLSDRGPGLLAANATS
LACGHSSSSGCESSGGEGVGHVVEGDAEGRHSLVLSRNSSSGSAASTEAR
CASNVDTTHSINLDDALPPAVQEADSEDVTTAASVSVPEGSSSISTECST
IAKPHELQCSETPVETAATAAAAGSTNESASTVSTIPTAILTSLPTISAM
DPSGAGEVFLPAATTNPAPTDCPDPGAIPIVTAQPMSVAANDTRSGLQPT
SHKAVRPPSSFAQPRRLATAKSLGDVSLAIQHYRASVASARSHGLVSGGN
GRRSGGALGTAERLSVGGDLGGGGGDGGGGLNTRGQRERFPEDQPLPLDL
TPQESDMPPAAPPETLLDALLDEVLESLGDT* back to topmRNA from alignment at H-paniculata_contig14478:2046..3895- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig14478.2689.1 ID=mRNA_H-paniculata_contig14478.2689.1|Name=mRNA_H-paniculata_contig14478.2689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1850bp|location=Sequence derived from alignment at H-paniculata_contig14478:2046..3895- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGATGAGGCTGGGTTGCTTGTGCTGAGTGCGGGGCAGGTCAAGCGCGG
GTTGCGTTTCTGCATGAAGGTTCATCGGTTCCGGGAGATGTGTCGCGGAG
GATCATGCGTTACGGTGTGGAAGGTAGGTGGTGTTTTGGAAATCGCTCAC
GGAGTATATACGTCCGAGGTTACTTATCATTATGAGGCTACATAAACGCG
GTATATATTATTTTGCTGGTAACTAATTTACCACGAAAAAATAATGGCTA
ATGGAAAACTCAGCTAAGTTTTCAACCCAAAGTGCTTCCAGTGTATATCC
CTCTCCTTTCGGAGGAACCTCGTGACAGACACAGATACCCATCATCTATC
GCTTTTTTTTTTTCGCAGTAACGGTAGCTAACCCTAACCTTACAGGGTTG
GAGGCCCAACGCTTACCTAACCCGAACTGTCGCCCGTGTGCGCCCATATT
AGCCTCCCGCCGAACATGTGACATCCACAGTCATTCTTGTGTGTGTGTGT
GTTTTTTTTTTTTTTTTTTTTTTTTACTGCAGAGGTGGGCGATTGCTGCG
GACGCGTTAGAAGAGCTATACCCTGGCTTGAGTGACCGCGGTCCCGGGCT
TCTCGCGGCAAATGCAACGTCGCTTGCATGCGGCCATAGTAGCAGCAGCG
GCTGCGAGAGCAGCGGCGGAGAAGGAGTGGGGCACGTGGTGGAAGGAGAC
GCGGAAGGCAGACACTCCCTTGTGTTGAGCAGGAACTCCAGCAGCGGTTC
CGCGGCGTCAACGGAAGCAAGATGTGCGTCGAATGTTGACACCACGCACT
CCATAAACCTGGATGATGCGCTGCCGCCTGCTGTACAGGAGGCTGACTCT
GAGGATGTGACAACGGCCGCCTCAGTTAGCGTGCCCGAAGGCAGCAGTAG
CATCAGCACCGAATGTAGTACTATCGCCAAGCCGCACGAACTGCAATGTA
GTGAAACACCTGTTGAAACGGCAGCCACCGCTGCTGCCGCCGGCTCAACG
AATGAATCTGCTTCGACTGTCTCGACAATCCCGACTGCAATTCTAACATC
CCTGCCAACCATTTCGGCTATGGATCCGTCTGGTGCGGGAGAAGTTTTCC
TCCCAGCTGCAACAACAAACCCGGCCCCAACGGATTGCCCGGATCCGGGG
GCTATACCGATCGTGACAGCGCAACCAATGTCAGTCGCCGCCAACGACAC
CCGGAGCGGCCTGCAACCAACCTCGCACAAGGCTGTGCGGCCACCCTCTT
CCTTTGCACAGCCTCGCCGCCTCGCTACAGCTAAGAGCCTAGGCGATGTG
TCTTTGGCCATCCAGCACTATCGGGCGAGCGTGGCGAGCGCTCGCTCGCA
CGGGTTAGTATCGGGTGGGAATGGTCGAAGGTCGGGCGGAGCCCTGGGGA
CGGCGGAAAGGCTGTCTGTTGGGGGTGATTTAGGAGGTGGTGGTGGTGAT
GGTGGTGGTGGTTTGAATACGCGGGGCCAAAGGGAGAGATTTCCGGAAGA
TCAGCCGTTGCCTCTGGACCTAACACCTCAGGAGTCAGATATGCCTCCGG
CGGCGCCACCAGAGACGTTGCTAGATGCCTTATTGGACGAGGTTTTAGAA
AGCTTGGGAGATACATGATCTTGATGGAGAGGGGGGGGGAGTGAGTAATT
TTGGTGCAAGGTGCGTGAATTCGTGATGGAGATTTTCCTGGGATAAATGC
GTTCGCTGGATTGACCAAAGGGATTTGACGTTGCGTCAGACGATGTATTG
GCGACGCCTGTGTGGAATTGTAGGTATTCGTGCGGGTTTTTTCTGCCATG
ATTTAGTTGACTCGTCGCCAAGTTAGATATAGAGTAGGTAGGGAGTTGCT
back to topCoding sequence (CDS) from alignment at H-paniculata_contig14478:2046..3895- >mRNA_H-paniculata_contig14478.2689.1 ID=mRNA_H-paniculata_contig14478.2689.1|Name=mRNA_H-paniculata_contig14478.2689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2292bp|location=Sequence derived from alignment at H-paniculata_contig14478:2046..3895- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGTTCATCGGTTCCGGGAGATGTGTCGCGGAGGATCATGCGTTAC
GGTGTGGAAGATGAAGGTTCATCGGTTCCGGGAGATGTGTCGCGGAGGAT
CATGCGTTACGGTGTGGAAGAGGTGGGCGATTGCTGCGGACGCGTTAGAA
GAGCTATACCCTGGCTTGAGTGACCGCGGTCCCGGGCTTCTCGCGGCAAA
TGCAACGTCGCTTGCATGCGGCCATAGTAGCAGCAGCGGCTGCGAGAGCA
GCGGCGGAGAAGGAGTGGGGCACGTGGTGGAAGGAGACGCGGAAGGCAGA
CACTCCCTTGTGTTGAGCAGGAACTCCAGCAGCGGTTCCGCGGCGTCAAC
GGAAGCAAGATGTGCGTCGAATGTTGACACCACGCACTCCATAAACCTGG
ATGATGCGCTGCCGCCTGCTGTACAGGAGGCTGACTCTGAGGATGTGACA
ACGGCCGCCTCAGTTAGCGTGCCCGAAGGCAGCAGTAGCATCAGCACCGA
ATGTAGTACTATCGCCAAGCCGCACGAACTGCAATGTAGTGAAACACCTG
TTGAAACGGCAGCCACCGCTGCTGCCGCCGGCTCAACGAATGAATCTGCT
TCGACTGTCTCGACAATCCCGACTGCAATTCTAACATCCCTGCCAACCAT
TTCGGCTATGGATCCGTCTGGTGCGGGAGAAGTTTTCCTCCCAGCTGCAA
CAACAAACCCGGCCCCAACGGATTGCCCGGATCCGGGGGCTATACCGATC
GTGACAGCGCAACCAATGTCAGTCGCCGCCAACGACACCCGGAGCGGCCT
GCAACCAACCTCGCACAAGGCTGTGCGGCCACCCTCTTCCTTTGCACAGC
CTCGCCGCCTCGCTACAGCTAAGAGCCTAGGCGATGTGTCTTTGGCCATC
CAGCACTATCGGGCGAGCGTGGCGAGCGCTCGCTCGCACGGGTTAGTATC
GGGTGGGAATGGTCGAAGGTCGGGCGGAGCCCTGGGGACGGCGGAAAGGC
TGTCTGTTGGGGGTGATTTAGGAGGTGGTGGTGGTGATGGTGGTGGTGGT
TTGAATACGCGGGGCCAAAGGGAGAGATTTCCGGAAGATCAGCCGTTGCC
TCTGGACCTAACACCTCAGGAGTCAGATATGCCTCCGGCGGCGCCACCAG
AGACGTTGCTAGATGCCTTATTGGACGAGGTTTTAGAAAGCTTGGGAGAT
ACATGAAGGTGGGCGATTGCTGCGGACGCGTTAGAAGAGCTATACCCTGG
CTTGAGTGACCGCGGTCCCGGGCTTCTCGCGGCAAATGCAACGTCGCTTG
CATGCGGCCATAGTAGCAGCAGCGGCTGCGAGAGCAGCGGCGGAGAAGGA
GTGGGGCACGTGGTGGAAGGAGACGCGGAAGGCAGACACTCCCTTGTGTT
GAGCAGGAACTCCAGCAGCGGTTCCGCGGCGTCAACGGAAGCAAGATGTG
CGTCGAATGTTGACACCACGCACTCCATAAACCTGGATGATGCGCTGCCG
CCTGCTGTACAGGAGGCTGACTCTGAGGATGTGACAACGGCCGCCTCAGT
TAGCGTGCCCGAAGGCAGCAGTAGCATCAGCACCGAATGTAGTACTATCG
CCAAGCCGCACGAACTGCAATGTAGTGAAACACCTGTTGAAACGGCAGCC
ACCGCTGCTGCCGCCGGCTCAACGAATGAATCTGCTTCGACTGTCTCGAC
AATCCCGACTGCAATTCTAACATCCCTGCCAACCATTTCGGCTATGGATC
CGTCTGGTGCGGGAGAAGTTTTCCTCCCAGCTGCAACAACAAACCCGGCC
CCAACGGATTGCCCGGATCCGGGGGCTATACCGATCGTGACAGCGCAACC
AATGTCAGTCGCCGCCAACGACACCCGGAGCGGCCTGCAACCAACCTCGC
ACAAGGCTGTGCGGCCACCCTCTTCCTTTGCACAGCCTCGCCGCCTCGCT
ACAGCTAAGAGCCTAGGCGATGTGTCTTTGGCCATCCAGCACTATCGGGC
GAGCGTGGCGAGCGCTCGCTCGCACGGGTTAGTATCGGGTGGGAATGGTC
GAAGGTCGGGCGGAGCCCTGGGGACGGCGGAAAGGCTGTCTGTTGGGGGT
GATTTAGGAGGTGGTGGTGGTGATGGTGGTGGTGGTTTGAATACGCGGGG
CCAAAGGGAGAGATTTCCGGAAGATCAGCCGTTGCCTCTGGACCTAACAC
CTCAGGAGTCAGATATGCCTCCGGCGGCGCCACCAGAGACGTTGCTAGAT
GCCTTATTGGACGAGGTTTTAGAAAGCTTGGGAGATACATGA back to top
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