mRNA_H-paniculata_contig1446.2683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1446.2683.1 vs. uniprot
Match: A0A6H5JPP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP0_9PHAE) HSP 1 Score: 246 bits (629), Expect = 1.260e-65 Identity = 134/249 (53.82%), Postives = 167/249 (67.07%), Query Frame = 1
Query: 1240 GADLTIRFSRALRLARLPSIAAMVLQDGVGLDMDWERRTLWSREMAMVKLQQGETEAAVDFLDNAVEFDRRDLRSLQLMGAVNVVRGSVELGFFYLRMAVNLQRDNIDETFRNIFVEERLDPSLLEGPLNAPQEMLVTRRDWMVIFLGWALEGRWKELGGSVPVLRRVDSFLDRHYSMDSEISFMLGRDLAKRGFEKDAWDHLTRAAAPWNRQVYRVRAALSIPAVSGSRQDLAVAMAALEHGIGRLMP 1986
G +LT+ FS LR ARLPS+A L GL M +R W E A+V LQ G AV L +A+ +D DLR LQ +GA V +GSV GF YLR A LQ+ I F I + LDPS+LE +R+WM +FLGWAL+G+WK+LGGSV VLRRVD+FL RH+S DSEISFMLGR+L+KRGF+K++W +LT AAAPWNRQ+YR+R+ALSIP V+ S QDLA+AMA LE + R P
Sbjct: 219 GFELTVIFSSVLRAARLPSVALDALHGAAGLTMTDRQRAAWETERALVWLQLGRVGEAVVGLKSALGWDAGDLRVLQPLGAALVAQGSVAEGFHYLREAAELQKSRIATVFEQIVRNQGLDPSILETKNR--------KRNWMAMFLGWALQGKWKKLGGSVHVLRRVDNFLRRHFSADSEISFMLGRELSKRGFQKESWHYLTSAAAPWNRQIYRIRSALSIPTVASSEQDLALAMATLEGWLRRQEP 459
BLAST of mRNA_H-paniculata_contig1446.2683.1 vs. uniprot
Match: D8LAX0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX0_ECTSI) HSP 1 Score: 229 bits (584), Expect = 7.710e-60 Identity = 122/213 (57.28%), Postives = 154/213 (72.30%), Query Frame = 1
Query: 1348 RRTLWSREMAMVKLQQGETEAAVDFLDNAVEFDRRDLRSLQLMGAVNVVRGSVELGFFYLRMAVNLQRDNIDETFRNIFVEERLDPSLLEGPLNAPQEMLVTRRDWMVIFLGWALEGRWKELGGSVPVLRRVDSFLDRHYSMDSEISFMLGRDLAKRGFEKDAWDHLTRAAAPWNRQVYRVRAALSIPAVSGSRQDLAVAMAALEHGIGRLMP 1986
+R W E A+V LQ G AV L +A+ +D DLR LQ +GA V +GSV GF YLR A LQ+ I F I + LDPS+LE +E+LVT+R+WM +FLGWAL+G+WK+LGGSV VLRRVD+FL RH+S DSEISFMLGR+L+KRGF+K++W +LT AAAPWNRQ+YR+R+ALSIP V+ S QDLA+AMAALE + R P
Sbjct: 5 QRAAWETERALVWLQLGRVGEAVVGLKSALGWDAGDLRVLQPLGAALVAQGSVAEGFRYLREAAELQKSRIATVFEQIVRNQGLDPSVLETKNR--KEVLVTQRNWMAMFLGWALQGKWKKLGGSVHVLRRVDNFLRRHFSADSEISFMLGRELSKRGFQKESWHYLTSAAAPWNRQIYRIRSALSIPTVASSEQDLALAMAALEGWLRRQEP 215 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1446.2683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1446.2683.1 >prot_H-paniculata_contig1446.2683.1 ID=prot_H-paniculata_contig1446.2683.1|Name=mRNA_H-paniculata_contig1446.2683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=700bp CSSAGLQTNYLPSHSWGDGTVEAHVMHLLPRFRNIPRTRYACGCSTYSSRback to top mRNA from alignment at H-paniculata_contig1446:9634..26258+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1446.2683.1 ID=mRNA_H-paniculata_contig1446.2683.1|Name=mRNA_H-paniculata_contig1446.2683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16625bp|location=Sequence derived from alignment at H-paniculata_contig1446:9634..26258+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1446:9634..26258+ >mRNA_H-paniculata_contig1446.2683.1 ID=mRNA_H-paniculata_contig1446.2683.1|Name=mRNA_H-paniculata_contig1446.2683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4200bp|location=Sequence derived from alignment at H-paniculata_contig1446:9634..26258+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |