mRNA_H-paniculata_contig14457.2681.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14457.2681.1
Unique NamemRNA_H-paniculata_contig14457.2681.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14457.2681.1 vs. uniprot
Match: D8LPS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS6_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 6.440e-47
Identity = 101/166 (60.84%), Postives = 113/166 (68.07%), Query Frame = 1 
Query:    1 QAPTGLERLAGLLAATKENASAEISKLTSQVQALDVERRMLEAALEQCRDELGDAKSLAEQLKLENTRKVRKWRVEERDDWRALVDSMQADRNALQEENTRLADELKRCIATLRPLFPAS---PR------GDT-------------------PEVTHRTITIGRE 414
            +APTGLERLAGLLAATKENASAEISKL SQVQAL++ERR LEAALE CRDE GD K+L EQ +LEN RK   WRVEERDDWRAL+DSMQADR ALQ +N RL  EL RCI  L  +FP+S   PR      GD                    PE+THR I+ G +
Sbjct:   41 RAPTGLERLAGLLAATKENASAEISKLDSQVQALEIERRTLEAALETCRDEFGDVKTLVEQFRLENPRK---WRVEERDDWRALLDSMQADRTALQRQNDRLEGELTRCITALLSIFPSSSPFPRSGRAKGGDANGTAAGGGDKKGTDDGDHPPELTHRNISSGSD 203
[Close]
BLAST of mRNA_H-paniculata_contig14457.2681.1 vs. uniprot
Match: A0A6H5KDY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY0_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.200e-25
Identity = 81/174 (46.55%), Postives = 96/174 (55.17%), Query Frame = 1 
Query:    1 QAPTGLERLAGLLAATKENASAEISKLTSQV------QALDVERRM--LEAALEQCRDELGDAKSLAEQLKLENTRKVRKWRVEERDDWRALVDSMQADRNALQEENTRLADELKRCIATLRPLFPAS---PR------GDT-------------------PEVTHRTITIGRE 414
            +APTGLERLAGLLAATKENASAEISKL SQ       +A D   R   L+    +C++  G A +           K   WRVEERDDWRAL+DSMQADR ALQ +N RL  EL RCI  L  +FP+S   PR      GD                    PE+THR+I+ G +
Sbjct:   12 RAPTGLERLAGLLAATKENASAEISKLNSQASSSAGNRAADARDRARGLQRRARRCQEPGGTAPAREHP-------KGMFWRVEERDDWRALLDSMQADRTALQRQNDRLEGELTRCITALMSIFPSSNPFPRSGRAKGGDANGTAAGGGDKKGADDADHPPELTHRSISSGSD 178
[Close]
BLAST of mRNA_H-paniculata_contig14457.2681.1 vs. uniprot
Match: A0A7S3YH54_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YH54_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 4.790e-12
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:   13 GLERLAGLLAATKENASAEISKLTSQVQALDVERRMLEAALEQCRDELGDAKSLAEQLKLENTRKVRKWRVEERDDWRALVDSMQADRNALQEENTRL 306
            GLE+L    A  K +   ++  L   V AL+ E R+L+  LE    E+   + +  QLK+EN+RK   WRVEER+DW+ALV S+Q DR ALQ EN RL
Sbjct:    9 GLEKLTKYTAQLKSDYEFKLKDLKDMVIALESENRILKTQLESYEMEVETTRRMVHQLKVENSRK---WRVEEREDWKALVASIQEDRKALQGENERL 103
[Close]
BLAST of mRNA_H-paniculata_contig14457.2681.1 vs. uniprot
Match: A0A7S2V322_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V322_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.500e-11
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:   13 GLERLAGLLAATKENASAEISKLTSQVQALDVERRMLEAALEQCRDELGDAKSLAEQLKLENTRKVRKWRVEERDDWRALVDSMQADRNALQEENTRLADELK 321
            G+ ++    A  K  +  ++ +L +   A + E R L+  +E   +E+   +S+ EQLK+EN    RKWRVEER+DW+ALV S+Q DR  LQ EN RL  E++
Sbjct:   61 GIAKVRNYAAKVKRESEDQMKELKNMAIAFEGENRCLKEQIENYENEVETLRSMVEQLKIEN---ARKWRVEERNDWKALVKSIQEDRAVLQAENERLKQEIE 160
[Close]
BLAST of mRNA_H-paniculata_contig14457.2681.1 vs. uniprot
Match: A0A7S2DRK3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRK3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.780e-10
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:   49 KENASAEISKLTSQVQALDVERRMLEAALEQCRDELGDAKSLAEQLKLENTRKVRKWRVEERDDWRALVDSMQADRNALQEENT--RLADELKRCIA 333
            KE A A I +   +   L  E   L+  L+ C DEL     L EQLKLEN++K   WR+EER++W++LV+++Q+DR+ LQEEN   +L ++  RC A
Sbjct:    2 KEQAHAAIDECNQKNVELKRENEALQQQLQICLDELDFRNGLVEQLKLENSKK---WRIEERNEWKSLVEAVQSDRDELQEENELLKLENDRLRCQA 95
[Close]
BLAST of mRNA_H-paniculata_contig14457.2681.1 vs. uniprot
Match: A0A7S3LYT1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYT1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.180e-7
Identity = 39/103 (37.86%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:   13 GLERLAGLLAATKENASAEISKLTSQVQALDVERRMLEAALEQCRDELGDAKSLAEQLKLENTRKVRKWRVEERDDWRALVDSMQADRNALQEENTRLADELK 321
            GL++L   L  T+  A A +  L  ++  L  E    EA   +  +E    +   EQLK E T K R   ++ERDDWR+L+DS+Q DR+ LQEE   L   L+
Sbjct:    6 GLQKLTAYLNQTRRQAEAAVDALNVEISRLKQENDAYEAICRELEEEKEQYRLQVEQLKQEGTTKHR---LQERDDWRSLIDSVQKDRSRLQEECNTLETALE 105
[Close]
BLAST of mRNA_H-paniculata_contig14457.2681.1 vs. uniprot
Match: A0A8J2WTU7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTU7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.830e-5
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  121 LEAALEQCRDELGDAKSLAEQLKLENTRKVRKWRVEERDDWRALVDSMQADRNALQEENTRL 306
            L+AAL+   DEL    +   QL+LE T K   ++VEERDDWRALV S+Q DR  LQ+EN RL
Sbjct:   39 LKAALDDAADELDLCWAHVHQLRLETTTK---FQVEERDDWRALVRSVQEDRQRLQQENARL 97
[Close]
BLAST of mRNA_H-paniculata_contig14457.2681.1 vs. uniprot
Match: A0A7S3NMG5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMG5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.090e-5
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   76 KLTSQVQALDVERRMLEAALEQCRDELGDAKSLAEQLKLENTRKVRKWRVEERDDWRALVDSMQADRNALQEENTRLADE 315
            +L S+ +A + E   L+A +E  +DEL    S   QLK EN     K+R EERDDW+ALV S+Q DR  L+ EN RL  +
Sbjct:   31 ELLSRCKAAEDEVAQLQAEMEIAKDELQLCWSYVHQLKKEN---AVKFRFEERDDWKALVHSIQEDRQRLRRENKRLRQQ 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14457.2681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LPS6_ECTSI6.440e-4760.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDY0_9PHAE4.200e-2546.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YH54_HETAK4.790e-1245.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V322_9STRA6.500e-1139.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2DRK3_9STRA3.780e-1043.30Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3LYT1_9STRA6.180e-737.86Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A8J2WTU7_9STRA1.830e-554.84Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3NMG5_9STRA4.090e-545.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14457contigH-paniculata_contig14457:1612..5897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002300.1
Exons4
Model size507
Cds size507
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14457.2681.1prot_H-paniculata_contig14457.2681.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14457 1612..5897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.5507689-CDS-H-paniculata_contig14457:1611..17011622929152.5507689-CDS-H-paniculata_contig14457:1611..1701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14457 1612..1701 +
1691480750.7738168-CDS-H-paniculata_contig14457:1611..17011691480750.7738168-CDS-H-paniculata_contig14457:1611..1701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14457 1612..1701 +
1622929152.562397-CDS-H-paniculata_contig14457:2321..24471622929152.562397-CDS-H-paniculata_contig14457:2321..2447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14457 2322..2447 +
1691480750.7867143-CDS-H-paniculata_contig14457:2321..24471691480750.7867143-CDS-H-paniculata_contig14457:2321..2447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14457 2322..2447 +
1622929152.5765493-CDS-H-paniculata_contig14457:3146..32391622929152.5765493-CDS-H-paniculata_contig14457:3146..3239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14457 3147..3239 +
1691480750.79793-CDS-H-paniculata_contig14457:3146..32391691480750.79793-CDS-H-paniculata_contig14457:3146..3239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14457 3147..3239 +
1622929152.5908709-CDS-H-paniculata_contig14457:5699..58971622929152.5908709-CDS-H-paniculata_contig14457:5699..5897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14457 5700..5897 +
1691480750.8059635-CDS-H-paniculata_contig14457:5699..58971691480750.8059635-CDS-H-paniculata_contig14457:5699..5897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14457 5700..5897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14457.2681.1

>prot_H-paniculata_contig14457.2681.1 ID=prot_H-paniculata_contig14457.2681.1|Name=mRNA_H-paniculata_contig14457.2681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
QAPTGLERLAGLLAATKENASAEISKLTSQVQALDVERRMLEAALEQCRD
ELGDAKSLAEQLKLENTRKVRKWRVEERDDWRALVDSMQADRNALQEENT
RLADELKRCIATLRPLFPASPRGDTPEVTHRTITIGREHKHASVDMAWLD
SLAEEFGVQDVQEDGVEWG
back to top

mRNA from alignment at H-paniculata_contig14457:1612..5897+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14457.2681.1 ID=mRNA_H-paniculata_contig14457.2681.1|Name=mRNA_H-paniculata_contig14457.2681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4286bp|location=Sequence derived from alignment at H-paniculata_contig14457:1612..5897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGCCAACTGGGCTGGAGCGACTGGCCGGTCTACTCGCCGCGACGAA
AGAGAATGCCTCAGCAGAGATCTCCAAGCTCACGTCTCAGGTACAACGGA
TTCGCCGTAAATACCTATGCGAAGTTTATACGTGGCCATAGTGCAAAGCT
ATTTTCGCAGTTTGCTTCGTCACAAAGTGACTATCCAGTTTTGATACTCA
GCCTGCAATTGATATCGTGTCGATGTGTTCTCACCAGTGTGGGCCTTCAA
TTTTTTGGTTCTGTATTCTAAGGATTTGGTTTTCGGGTTGGACTGGGTAG
TTCACCAATTTGATCGGGGCGAGAAGTGTGAAATTATGCTGTGGATGAAT
TTTGAGTTGGGTGATATTGTGTTGTAGTGCCTCTAATATATCTTCTCTAC
TTGGCGCGACCCATTTGTTTGCAGGAAGGAAGTCTCCCTGTTGGGCGTTC
GATTTGTTATGGACATGTCTAATTCAGATTCATTTTAACGACGTCGTGTG
GGAATTAAGAATTAAATAACCCTTGGCTCGTATTTTTTGTTTTCTATCTC
TGCTGCTGCTACTGCTGCTACCTCTCCCGCCGCCTAGTAGAAACGTTGAT
TACATGACCGTGAAACGGTGACGAACTTCCGTTTTCAAACCATTTTTCAT
CGTCAGGCACCACACAACGCTTTGACCTTTTTTTTTCTCTATATTTTTGT
TGTTGTGAAGGTTCAAGCTCTAGATGTGGAGCGGCGCATGCTGGAAGCGG
CGCTAGAACAATGTCGGGACGAGCTCGGCGATGCGAAGAGCCTGGCAGAG
CAACTAAAGCTGGAGAACACCCGGAAGGTACGGAAGGTAAAATAATCGTT
GGAAAATACGTCGTGCCCAGCGGAACGACTCTTGAGAAACGATCGTATAG
GATGCACAATTCGGGTAATGTGATGAACTAAGTTCCAATTAACTAGTGTG
CTGAGATGGTCGATGGTTGCCCTCTTAGAGCTGTTCTTAACTCTGTGCCT
TTCTAGCAATCTCTGGGAAGCGAATCTGGATGGAGAGCGCGCCTACTTGC
GAGCGCAGCAAACCCTTGTGTGTGGATCGAGGACAAAACGCGGCCATAGT
AATAGTCGGAATCGTTATTATCCAGTGTGGTATGATGATGATAGTGATGT
GAAGAATGATGGTTATGATGATGTTTCCCTCGGAATAGCTTCCACTCGTC
TTGTCCAGCTTTCGTTTCCAAGTGTCGAGTTACACGGTAAAATAATCAAG
TGATATGAATCAGTGTTCACCAGTGACGTAATTATCATTTCGAGCTGATT
TTTGATTCTGCACTATTTAGTTTTTTGTGTTTCCCGTTTCTGCTTTTGTC
ATTAGATTCGCTGGTTGGTCAGTCCGTTATTACTGTCCAGATTGATGAAG
GTTGCCTCTGCTGCTGCACATATGGTCGGCACCCTGAGAGGACATAATCT
TTTACTGTGTTGTTATTTCAAATGTGTGAGGTTTTTTGCGTTACGGGATT
TGTGTATTCCGATTTTTCTGTTCCGGTTATTTTAGTGGCGAGTGGAGGAA
CGTGACGATTGGAGAGCTCTGGTGGACAGCATGCAAGCGGATAGGAATGC
CCTGCAGGAGGAAAACACGAGGCTAGCGGTGAGATTAAAAAAAATGAAAC
TCAAGAAAAGAATCGTTTTAGCTCTACCCTTCAGCTCCTTGACAAAAACA
CATACGTGAAGCATTCGCAAGGAAAATGATAAGTAAGCGTTCACCTTAAG
GCCATAACCTTTTTCAAACTCGGAATTTTTCTTCCAACACTCTAGTGTAA
CCGTCCAAAAGCCCCGCGACTTCCTCGGCTTGTACCTAAATATGTAAAAA
ACAGGAATTGATCGAGAAACAGGTGGGAAAACGCCCTTTGAAATTTCTGC
TGTTTCTCTCGAAAAGCGTTTTCGTTGAAAGAAAAGATAAATGGCTCCAA
ATGGCTTGAAACGGTGATTGATCGACGGTATATTATCTCAAGGAGATTTC
CGATAAAAAAAACGATTGTTGCGTTGGATTTCACAGCAAAAATGATATCA
AAACCAATCATTTTCTCTTTTACATCAATCTTGAAGTGATCTCCTCCGCG
TCATGGCATCGAGGTGGAACACCCAAGATGCACCTGAGATTCAGTTTTCG
GTGCTCGTAACGTATGCATAGACACGTGTTCATGCTGGTGCTCGAGTGAT
GGTGTGGCCTGAGGGGGCGAGAAGTAACCCGATAATGATCGGTTTTAGTG
AGCATTTGCCCAGAAATAAAACGTAGTGATGCGTTCTTTCTTGGGAGGTC
TCGTTGAGATGTTCCGTTATCGTTGATTGACCATCATTGCCGGCTCTCTT
GAACGATTTAGCCCTTGTTGAAACCAAATTCTGTTGGAGAAAAAAATGGA
GACTTGAAGAAGGTATTTTCTCAACAGTTTCGCAGACATCAGGTGTTTTG
TAAATATCGATGGGCAAGCCGAGGTCACGGACTTTCGAACGATGTGCTCA
GTTTTTCATGTTCCCTAGGTTTTGAAGATGTGTGACTGTTTAACCATAAG
CACGCATTCTTATGAGAGAGACGGAATAGGTGGTTGATGACTGCTTTCAA
ATCCATGTCTCCACTAAATTTCTTCTGACTTGTATTCTGCCTTCCGTCAC
GGCGGTGGTAGCGTCGTGTGCGCGGATTGGATACCCTCCGCCGTTTTGAT
TCCTTCCAGGGGCCAAATGCTCATGACTATCTGATGACTGCATACAACAG
TAGACGCGGCTTGGACGCACAAGCTATGGAGCCTGAGAATCTCCTGTATA
TCAATTATCGACAGTGAAACACTGATGAATCCTTCAACTTTTTCGTCCAA
GGATAAATCGATCTGAGTGTAGGTGAAGACGATTGACTGAAATTTGCTAC
AAAAGCTTGTGAGCTACTACCTTGAGAATTCCCCTCAGGGGGGCGAAGTA
ACTTTTCTGCGTTTAACAGATGAAACGCCTCGAGGCGTTCCGAGCACACA
CTGAGTGATAGAGCAAGATATTGAGATCATTTCCGGGGAAGAGGGTGGGG
GGGGGTTCGCGATCGGGGCGATCGCGAAAGCGATTCCTCGCCGAGAGTAC
GGAATTGCTGTCAGGAAGAGGCTTGATGCAAGCCAGAGCCAACATTCGCT
TCTATCACACCAGCTAGCCAAAGCATCGATAAAAACACGATTCAACTCGA
AGCAGGGCAAAAACAAAAACATTCATTTAGGTTGCATCTATTTACAAAGC
CAAATAATAAAAAGTGCTCTCAGAGCCCAACACTTCGTTGAATAAACTAT
TTTTTTTGCAGCAAAAACAGGTGGTTCAAGTAGAATTATTGGCATTAAAA
AAAATGAAAAATACAAAACTATCTCAACCCTATGACTTCGGGATTCCTGT
GTGAAACTTTTGGCAAGGAGAACAAGAGGGAGCATGCCGCACAATAAGTC
ATTGGCGTGTCTACGCCAGCCTTTAGCAGCAATAGATCCAGAATTCGGCA
TTTGGGGCATTGGTCAGATGTTAGATACTGGCTATAGTTCGTGTATATTT
TCATTCAGTTGATCCTGACAAGCATTTCTAGCAAAATGTTGATATACGCG
AAGCGTTGTCGATACATATATCTATATGGTGTCGGCGTTACATGATACAC
CGCAAATATGTCGACCCCGATACACTGCCTTAGCTTTCAGACGATAACAT
ATTAGTGTGCCTCTGTTCGCTTGCCATTGTGGACCAATTCTATTGGTGAT
CTTCCTCTGTATATTCAATAACGTTCTGTGATCCTCAAGTCAAATGGATC
GTGGTGAAAAGGAGCCAGTCAATCGTGACTTTGGGGGTTAGCCGCGGTTA
TCTTCTCTGTCACACACAATTGTTCGCTGGCTATGTCCATCTGTTCAGGC
AGAGGGTGTAGATGGATCTTAGGTGCTTGGCCTTGTGTTAGGCAAGCTGC
ACAGTATATCTTGTGATACAAAGCAAGTCATGCGTGAAAGCATGTTTTTA
ATGAACTATTGATCAATCCACCCCCCCCCCCCCCTCCCCTCTCCCGCTCT
CTGCATCCCTCTATCCCTACCTGCTTACTGTCTCCAAGGATGAATTGAAA
CGCTGCATCGCAACTCTCCGACCGCTTTTTCCGGCCTCCCCGCGTGGCGA
CACGCCAGAAGTAACCCACCGTACCATCACGATCGGCCGTGAGCATAAAC
ACGCCTCCGTGGACATGGCGTGGCTTGACTCTCTGGCCGAGGAGTTTGGC
GTGCAAGACGTTCAGGAGGACGGGGTTGAGTGGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14457:1612..5897+

>mRNA_H-paniculata_contig14457.2681.1 ID=mRNA_H-paniculata_contig14457.2681.1|Name=mRNA_H-paniculata_contig14457.2681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig14457:1612..5897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGCCAACTGGGCTGGAGCGACTGGCCGGTCTACTCGCCGCGACGAA
AGAGAATGCCTCAGCAGAGATCTCCAAGCTCACGTCTCAGCAGGCGCCAA
CTGGGCTGGAGCGACTGGCCGGTCTACTCGCCGCGACGAAAGAGAATGCC
TCAGCAGAGATCTCCAAGCTCACGTCTCAGGTTCAAGCTCTAGATGTGGA
GCGGCGCATGCTGGAAGCGGCGCTAGAACAATGTCGGGACGAGCTCGGCG
ATGCGAAGAGCCTGGCAGAGCAACTAAAGCTGGAGAACACCCGGAAGGTA
CGGAAGGTTCAAGCTCTAGATGTGGAGCGGCGCATGCTGGAAGCGGCGCT
AGAACAATGTCGGGACGAGCTCGGCGATGCGAAGAGCCTGGCAGAGCAAC
TAAAGCTGGAGAACACCCGGAAGGTACGGAAGTGGCGAGTGGAGGAACGT
GACGATTGGAGAGCTCTGGTGGACAGCATGCAAGCGGATAGGAATGCCCT
GCAGGAGGAAAACACGAGGCTAGCGTGGCGAGTGGAGGAACGTGACGATT
GGAGAGCTCTGGTGGACAGCATGCAAGCGGATAGGAATGCCCTGCAGGAG
GAAAACACGAGGCTAGCGGATGAATTGAAACGCTGCATCGCAACTCTCCG
ACCGCTTTTTCCGGCCTCCCCGCGTGGCGACACGCCAGAAGTAACCCACC
GTACCATCACGATCGGCCGTGAGCATAAACACGCCTCCGTGGACATGGCG
TGGCTTGACTCTCTGGCCGAGGAGTTTGGCGTGCAAGACGTTCAGGAGGA
CGGGGTTGAGTGGGGGGATGAATTGAAACGCTGCATCGCAACTCTCCGAC
CGCTTTTTCCGGCCTCCCCGCGTGGCGACACGCCAGAAGTAACCCACCGT
ACCATCACGATCGGCCGTGAGCATAAACACGCCTCCGTGGACATGGCGTG
GCTTGACTCTCTGGCCGAGGAGTTTGGCGTGCAAGACGTTCAGGAGGACG
GGGTTGAGTGGGGG
back to top