mRNA_H-paniculata_contig1445.2677.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1445.2677.1
Unique NamemRNA_H-paniculata_contig1445.2677.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1445.2677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1445contigH-paniculata_contig1445:17222..17939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size718
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.0784097-CDS-H-paniculata_contig1445:17221..179381622929152.0784097-CDS-H-paniculata_contig1445:17221..17938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1445 17222..17938 +
1691480750.652831-CDS-H-paniculata_contig1445:17221..179381691480750.652831-CDS-H-paniculata_contig1445:17221..17938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1445 17222..17938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1445.2677.1prot_H-paniculata_contig1445.2677.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1445 17222..17938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1445.2677.1

>prot_H-paniculata_contig1445.2677.1 ID=prot_H-paniculata_contig1445.2677.1|Name=mRNA_H-paniculata_contig1445.2677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
NLHEHADRAHPVSPQAPSVRTGTATVAAAAEATRRPAFSSSDEDGSVSRN
SSDSGDSRAEGEQGLLRSSSFSTCENDDDDTACGSKGIESTSNDDQDGVP
GVTESDDSSEYGGGCSDADQPAAGVDTSAGDLHEEASPKQQLVVFETKVT
GERGKHERQVDGIHNGEVPQQSYGAEDEDIGEQLTQQSGSKDVSGRSGVH
NKWACSPRATSPAWCSHDHTSTDGNAVLPLDNRESSRPK
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mRNA from alignment at H-paniculata_contig1445:17222..17939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1445.2677.1 ID=mRNA_H-paniculata_contig1445.2677.1|Name=mRNA_H-paniculata_contig1445.2677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=718bp|location=Sequence derived from alignment at H-paniculata_contig1445:17222..17939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCTCCACGAACATGCGGACCGTGCGCACCCGGTATCCCCACAAGCTCC
TTCGGTCCGTACTGGAACTGCCACCGTCGCGGCCGCGGCTGAGGCTACAA
GACGTCCGGCGTTCTCGTCCTCTGACGAAGACGGATCAGTCAGCCGAAAC
TCCAGCGATAGTGGTGATAGTAGAGCGGAGGGCGAGCAGGGTTTGCTACG
GTCGTCGTCTTTTTCCACGTGCGAAAATGATGACGATGACACTGCCTGTG
GAAGCAAGGGCATCGAGAGTACCAGCAACGATGATCAGGATGGTGTTCCC
GGTGTTACCGAATCTGACGACAGCAGTGAGTACGGTGGTGGTTGTAGTGA
TGCTGATCAACCAGCAGCTGGTGTGGACACCAGTGCTGGTGACCTGCATG
AGGAAGCGAGCCCAAAACAACAGCTGGTGGTATTCGAAACAAAAGTGACT
GGGGAGAGAGGTAAACACGAAAGGCAAGTCGACGGCATCCACAATGGCGA
GGTCCCACAGCAAAGTTATGGTGCAGAAGATGAAGATATCGGCGAACAGC
TCACCCAACAAAGCGGCAGCAAAGACGTGAGCGGAAGGAGTGGTGTTCAT
AATAAATGGGCATGCAGTCCACGAGCTACTTCCCCCGCATGGTGCAGTCA
CGACCATACCTCGACAGATGGCAATGCTGTGCTCCCCCTGGACAACCGAG
AGAGCAGCCGGCCAAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig1445:17222..17939+

>mRNA_H-paniculata_contig1445.2677.1 ID=mRNA_H-paniculata_contig1445.2677.1|Name=mRNA_H-paniculata_contig1445.2677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig1445:17222..17939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCTCCACGAACATGCGGACCGTGCGCACCCGGTATCCCCACAAGCTCC
TTCGGTCCGTACTGGAACTGCCACCGTCGCGGCCGCGGCTGAGGCTACAA
GACGTCCGGCGTTCTCGTCCTCTGACGAAGACGGATCAGTCAGCCGAAAC
TCCAGCGATAGTGGTGATAGTAGAGCGGAGGGCGAGCAGGGTTTGCTACG
GTCGTCGTCTTTTTCCACGTGCGAAAATGATGACGATGACACTGCCTGTG
GAAGCAAGGGCATCGAGAGTACCAGCAACGATGATCAGGATGGTGTTCCC
GGTGTTACCGAATCTGACGACAGCAGTGAGTACGGTGGTGGTTGTAGTGA
TGCTGATCAACCAGCAGCTGGTGTGGACACCAGTGCTGGTGACCTGCATG
AGGAAGCGAGCCCAAAACAACAGCTGGTGGTATTCGAAACAAAAGTGACT
GGGGAGAGAGGTAAACACGAAAGGCAAGTCGACGGCATCCACAATGGCGA
GGTCCCACAGCAAAGTTATGGTGCAGAAGATGAAGATATCGGCGAACAGC
TCACCCAACAAAGCGGCAGCAAAGACGTGAGCGGAAGGAGTGGTGTTCAT
AATAAATGGGCATGCAGTCCACGAGCTACTTCCCCCGCATGGTGCAGTCA
CGACCATACCTCGACAGATGGCAATGCTGTGCTCCCCCTGGACAACCGAG
AGAGCAGCCGGCCAAAAAATCTCCACGAACATGCGGACCGTGCGCACCCG
GTATCCCCACAAGCTCCTTCGGTCCGTACTGGAACTGCCACCGTCGCGGC
CGCGGCTGAGGCTACAAGACGTCCGGCGTTCTCGTCCTCTGACGAAGACG
GATCAGTCAGCCGAAACTCCAGCGATAGTGGTGATAGTAGAGCGGAGGGC
GAGCAGGGTTTGCTACGGTCGTCGTCTTTTTCCACGTGCGAAAATGATGA
CGATGACACTGCCTGTGGAAGCAAGGGCATCGAGAGTACCAGCAACGATG
ATCAGGATGGTGTTCCCGGTGTTACCGAATCTGACGACAGCAGTGAGTAC
GGTGGTGGTTGTAGTGATGCTGATCAACCAGCAGCTGGTGTGGACACCAG
TGCTGGTGACCTGCATGAGGAAGCGAGCCCAAAACAACAGCTGGTGGTAT
TCGAAACAAAAGTGACTGGGGAGAGAGGTAAACACGAAAGGCAAGTCGAC
GGCATCCACAATGGCGAGGTCCCACAGCAAAGTTATGGTGCAGAAGATGA
AGATATCGGCGAACAGCTCACCCAACAAAGCGGCAGCAAAGACGTGAGCG
GAAGGAGTGGTGTTCATAATAAATGGGCATGCAGTCCACGAGCTACTTCC
CCCGCATGGTGCAGTCACGACCATACCTCGACAGATGGCAATGCTGTGCT
CCCCCTGGACAACCGAGAGAGCAGCCGGCCAAAA
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