mRNA_H-paniculata_contig14444.2673.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14444.2673.1
Unique NamemRNA_H-paniculata_contig14444.2673.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Match: D7FQ38_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ38_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 7.770e-62
Identity = 91/105 (86.67%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:    1 MADIDEQAAAEGQETFTERKIDVLVAEIPENLQQKATKRVCMAMDKYCIEKDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 315
            MAD DEQAA+E QE+ TERKI+VL+AEIPE LQQKA +RVC+AMDKY IEKDIATD+KKHFDEECEGSWHCV+GRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE
Sbjct:    1 MAD-DEQAASEAQESVTERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 104
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BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Match: A0A7S2RLM3_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLM3_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.600e-28
Identity = 57/105 (54.29%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:    1 MADIDEQAAAEGQETFTERKIDVLVAEIPENLQQKATKRVCMAMDKYCIEKDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 315
            MAD D  AA   +ET  +        +IPE + +KA  +   AMD++ IEKDIAT IK  FD++  G+WHCV GRSFGCSVTHETK+L FF+ DQ +VLLFCS E
Sbjct:    1 MADGDPGAALVRKETIHQM-------DIPEEMCRKAIGKANEAMDQHTIEKDIATAIKTSFDKDYGGTWHCVAGRSFGCSVTHETKYLVFFQLDQTYVLLFCSDE 98
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BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Match: A0A7S2UW34_9STRA (Dynein light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW34_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.070e-27
Identity = 49/91 (53.85%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   55 RKIDVLVAEIPE----NLQQKATKRVCMAMDKYCIEKDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 315
            RK+ +L AE PE    +LQ+ A ++V  ++ K+ I KD+AT++K+HFDE+  G+WHCV GR+FGCSVT+ET++L FFK +Q FVLLF S E
Sbjct:   15 RKVVILRAEFPEVKGEDLQEDAIRKVDESLTKHTISKDVATEVKRHFDEKYGGTWHCVVGRNFGCSVTNETRYLLFFKIEQTFVLLFKSQE 105
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BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Match: A0A835YLR1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.130e-25
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   79 EIPENLQQKATKRVCMAMDKYCIEKDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFK 276
            +IPE LQ+KA +RV   + +  + KDIA+D+KKHFD+EC G+WHCV GRSFGCSVTHETK+L FF+
Sbjct:   10 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 75
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BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Match: A0A7S2CC43_9STRA (Dynein light chain n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CC43_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.380e-23
Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:    1 MADIDEQAAAEGQETFTERKIDVLVAEIPENLQQKATKRVCMAMDKYCIEKDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 309
            MAD D      G++  + RK+ +     P N+ + A +++  A+DK+ IEKD+AT +K  FD++  G+WHC+ G+SFGCS+THETK+L + + D +F LLFCS
Sbjct:    1 MAD-DSDEEEVGKKKVSTRKVHLHQVLAPNNMCELAVEKLDEAIDKHTIEKDMATAVKTTFDKDYGGTWHCIVGKSFGCSITHETKYLMYIQVDHLFCLLFCS 102
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BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Match: A0A7S1U8R4_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8R4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.610e-23
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:   52 ERKIDVLVAEIPENLQQKATKRVCMAMDKYCIEKDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFKCDQM 288
            ER + VL AE+PE+L+ KA +    A+D + +EKD+A  +KK FDE   G+WHCV GR+FGCS+THETK+L FFK DQ+
Sbjct:   10 ERVLRVLKAEMPEDLKTKAAEVGNQALDAHEVEKDVAQFVKKAFDEASPGTWHCVVGRNFGCSITHETKYLIFFKLDQV 88
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BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Match: A0A7M3RBX8_SPIER (Dynein light chain n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A7M3RBX8_SPIER)

HSP 1 Score: 87.0 bits (214), Expect = 2.710e-20
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   46 FTERKIDVLVAEIPENLQQKATKRVCMAMDKYCIEKDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 309
             ++RK  V  A++ E +QQ A      A++KY IEKDIA+ IKK FD++   +WHC+ GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:    1 MSDRKAVVKNADMTEEMQQDAVDLASAALEKYNIEKDIASYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 88
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BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Match: A0A8C4N859_EPTBU (Dynein light chain n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4N859_EPTBU)

HSP 1 Score: 86.7 bits (213), Expect = 3.840e-20
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:   46 FTERKIDVLVAEIPENLQQKATKRVCMAMDKYCIEKDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 309
             TE+K  +  A++P+++Q+ A      A+DK+ IEKDIA+ IKK FD++   +WHCV GR+FG  VTHE+KH  +F   Q+ +LLF S
Sbjct:    1 MTEQKPVIKNADMPDDMQEDAVSFAKQALDKFNIEKDIASFIKKEFDKKYNPTWHCVVGRNFGSYVTHESKHFIYFYLGQVAILLFKS 88
[Close]
BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Match: A0A183T9E8_SCHSO (Dynein light chain n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183T9E8_SCHSO)

HSP 1 Score: 87.8 bits (216), Expect = 4.420e-20
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:   43 TFTERKIDVLVAEIPENLQQKATKRVCMAMDKYCIEKDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 309
            T  +RK  V  A++ E +QQ A      A++KY IEKDIA+ IKK FD++   +WHC+ GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:   44 TMGDRKAVVKNADMTEEMQQDAVDLASTALEKYNIEKDIASYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 132
[Close]
BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Match: A0A0P1B084_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B084_PLAHL)

HSP 1 Score: 86.7 bits (213), Expect = 7.180e-20
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   58 KIDVLVAEIPENLQQKATKRVCMAMDKY--CIEKDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 315
            KI +L  EI   ++ +A   +   + K    IEKDIATD+KKHFD++   +WHC+ G+ FGCS+ ++T++L FF+ DQ +VL+F S E
Sbjct:   25 KISILRLEIDTAMKDEAVTHLIQILQKTPDAIEKDIATDMKKHFDQKYGQTWHCIVGKGFGCSIAYDTQYLLFFRADQHYVLIFKSTE 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14444.2673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ38_ECTSI7.770e-6286.67Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2RLM3_9STRA4.600e-2854.29Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S2UW34_9STRA3.070e-2753.85Dynein light chain n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A835YLR1_9STRA5.130e-2563.64Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2CC43_9STRA1.380e-2343.69Dynein light chain n=1 Tax=Dictyocha speculum TaxI... [more]
A0A7S1U8R4_9STRA1.610e-2355.70Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7M3RBX8_SPIER2.710e-2047.73Dynein light chain n=2 Tax=Diphyllobothriidae TaxI... [more]
A0A8C4N859_EPTBU3.840e-2046.59Dynein light chain n=1 Tax=Eptatretus burgeri TaxI... [more]
A0A183T9E8_SCHSO4.420e-2048.31Dynein light chain n=2 Tax=Schistocephalus solidus... [more]
A0A0P1B084_PLAHL7.180e-2044.32Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14444contigH-paniculata_contig14444:3955..5527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue4.2e-47
Seed eggNOG ortholog2880.D7FQ38
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007600.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons3
Model size318
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14444.2673.1prot_H-paniculata_contig14444.2673.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14444 3955..5527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929151.7790554-CDS-H-paniculata_contig14444:3954..40561622929151.7790554-CDS-H-paniculata_contig14444:3954..4056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14444 3955..4056 -
1691480750.4834044-CDS-H-paniculata_contig14444:3954..40561691480750.4834044-CDS-H-paniculata_contig14444:3954..4056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14444 3955..4056 -
1622929151.790556-CDS-H-paniculata_contig14444:4612..47681622929151.790556-CDS-H-paniculata_contig14444:4612..4768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14444 4613..4768 -
1691480750.4942706-CDS-H-paniculata_contig14444:4612..47681691480750.4942706-CDS-H-paniculata_contig14444:4612..4768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14444 4613..4768 -
1622929151.8042402-CDS-H-paniculata_contig14444:5467..55271622929151.8042402-CDS-H-paniculata_contig14444:5467..5527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14444 5468..5527 -
1691480750.5036223-CDS-H-paniculata_contig14444:5467..55271691480750.5036223-CDS-H-paniculata_contig14444:5467..5527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14444 5468..5527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14444.2673.1

>prot_H-paniculata_contig14444.2673.1 ID=prot_H-paniculata_contig14444.2673.1|Name=mRNA_H-paniculata_contig14444.2673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MADIDEQAAAEGQETFTERKIDVLVAEIPENLQQKATKRVCMAMDKYCIE
KDIATDIKKHFDEECEGSWHCVTGRSFGCSVTHETKHLFFFKCDQMFVLL
FCSPE*
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mRNA from alignment at H-paniculata_contig14444:3955..5527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14444.2673.1 ID=mRNA_H-paniculata_contig14444.2673.1|Name=mRNA_H-paniculata_contig14444.2673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1573bp|location=Sequence derived from alignment at H-paniculata_contig14444:3955..5527- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGACATTGACGAACAGGCGGCGGCTGAGGGGCAAGAAACATTCAC
GGAGAGAAAAGTGGGTGTGGCAAACCTTCAAGGTGTATGGAGGGATATGG
TAGCTGTATTGTCTAGAGTTATGTAGGGTACTGTACTTGAATATTTTGTT
GAGCGCTGGAGGCTATTTCGGAACAAAAAAGGCATCCATCTGAACACAAA
CAAATTAGAATCGAGGCCTGCTGTTTTCGTGGGCGGAACAATATCTACTA
TTTGTCTGTGCTTTTTTTTTTTCTGTGTACTACTAGACTTTTTCTCTGAG
CAGCGGCGGCAATACCCACCGATACGTTACCCGTTTTCATGTCATCTGCA
TCACTTTCTGTTATTTTTGTAGACAGGGATCATCCCGTAATATTAAATCT
AACACAGTAGATGGGAACCGGCGCTGAAAAAGTAATACGTCATAACAAAT
TACCAGTCACTACTGGCTCTGGCAAAACTTGGAAATTGACTGACTAACCG
TGACAGAACTAGATTGAATGCAGACCGAACAAATGCAGTCCTTCTCTTCA
CTTGTTGCACCCTTCTTTCAATAACGATATATTTACTCCTCTACGCATAT
TAATTCAACATGATGACAACCTGAATCAAATTGCGTGAATAACACTCTCT
TCTAATCCCTTCCTTGTCCGCTGCTTCTCTCTCTCGGTTACGTTGTTCGC
CCTTTCCTCCTAACCCCTTGCCAACTTCTTGTCCCTCGTACGGCGCGGGT
GAGGCTTAGATCGACGTCCTCGTTGCAGAGATCCCGGAGAACTTGCAACA
GAAAGCGACGAAACGAGTGTGCATGGCGATGGACAAGTATTGCATCGAGA
AGGACATTGCTACGGATATCAAGAAGCACTTCGACGAGGAGTGCGAAGGA
TCATGGCATTGTGTGGTGCGTTGAACGGAACACCAAGAATGCACAGTTAG
TTCTACCACAATAAGAGCTCTACAGTTGTACGCCCCCCATAACAAGAAAC
TCGCATTTTCAATGAGGCTCAAAACGTCTTCGTGACAATTATCCTCAGTA
GTAGTATGTGAGAAGTTGGGATCATAGCTATAATTTTGGGTGAAATTGGC
TTTCATGTGAGAGGCATCCTACACTGGGGGGGGATTATTCAACATTCAGC
AGAGGTCGCTCCGCAAAGCGGTGCAAAAATAACGCCAATCAAAGCCATGT
CAATTGCATGTGTTTGTGTATCCCTAAAGGTGCACAGTCCACAAGTAGAA
ATAGGATTTCTGTTTAAGGGGGGGCAACAATGATGAAACAAAACAATTAT
CAATGCTCCACGCCCTTCTCAAAGTAGCTCCTTCGCTAAATGAAGCAGGT
CAAATACCCCCTCCCCTACCGTAATATGACTCGGCACCCAACAAGCGTTT
CGTTTTGGGGCTCCAAAAATGGCTAAATTTCATCTTCTTTCATCATCCCG
CTCTCCCGTGCGTACGCGTAGACTGGGCGAAGTTTTGGGTGCTCGGTGAC
GCACGAGACCAAGCATCTCTTCTTCTTCAAGTGCGACCAGATGTTCGTGT
TGCTATTCTGCTCTCCAGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14444:3955..5527-

>mRNA_H-paniculata_contig14444.2673.1 ID=mRNA_H-paniculata_contig14444.2673.1|Name=mRNA_H-paniculata_contig14444.2673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig14444:3955..5527- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGACATTGACGAACAGGCGGCGGCTGAGGGGCAAGAAACATTCAC
GGAGAGAAAAATGGCGGACATTGACGAACAGGCGGCGGCTGAGGGGCAAG
AAACATTCACGGAGAGAAAAATCGACGTCCTCGTTGCAGAGATCCCGGAG
AACTTGCAACAGAAAGCGACGAAACGAGTGTGCATGGCGATGGACAAGTA
TTGCATCGAGAAGGACATTGCTACGGATATCAAGAAGCACTTCGACGAGG
AGTGCGAAGGATCATGGCATTGTGTGATCGACGTCCTCGTTGCAGAGATC
CCGGAGAACTTGCAACAGAAAGCGACGAAACGAGTGTGCATGGCGATGGA
CAAGTATTGCATCGAGAAGGACATTGCTACGGATATCAAGAAGCACTTCG
ACGAGGAGTGCGAAGGATCATGGCATTGTGTGACTGGGCGAAGTTTTGGG
TGCTCGGTGACGCACGAGACCAAGCATCTCTTCTTCTTCAAGTGCGACCA
GATGTTCGTGTTGCTATTCTGCTCTCCAGAGTGAACTGGGCGAAGTTTTG
GGTGCTCGGTGACGCACGAGACCAAGCATCTCTTCTTCTTCAAGTGCGAC
CAGATGTTCGTGTTGCTATTCTGCTCTCCAGAGTGA
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