mRNA_H-paniculata_contig14443.2672.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14443.2672.1
Unique NamemRNA_H-paniculata_contig14443.2672.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14443.2672.1 vs. uniprot
Match: A0A6H5KYV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV9_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.780e-50
Identity = 115/152 (75.66%), Postives = 128/152 (84.21%), Query Frame = 1 
Query:   67 ENKRLVADIRAQRHHANAMVERIRTQQGHSATAGQEVNSLRARLQALEEERDGLSHILGRERSHGTGLEQLIEASRLREASVAAEQRQLAREKERLETKAARLSEELMQARDCLADLSSRVSA--TSSHQGSPSFVLPARTPIRSNNPTNPT 516
            EN+RLVAD RAQRHHANA++ERIR+QQGHS TAGQEV SLRARLQALEEERDGLSHILGRERSHG+GLEQLIEASRLREASVAAEQRQLAREK+RLE+KAA+L EEL QARDCLAD+SSR+S   T S +G        R    SN+P  P+
Sbjct:  998 ENRRLVADARAQRHHANALLERIRSQQGHSTTAGQEVISLRARLQALEEERDGLSHILGRERSHGSGLEQLIEASRLREASVAAEQRQLAREKDRLESKAAKLEEELSQARDCLADMSSRMSMSRTVSRRGGEG----ERDTSSSNDPATPS 1145
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BLAST of mRNA_H-paniculata_contig14443.2672.1 vs. uniprot
Match: D8LTR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR0_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.900e-26
Identity = 75/107 (70.09%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:  202 ALEEERDGLSHILGRERSHGTGLEQLIEASRLREASVAAEQRQLAREKERLETKAARLSEELMQARDCLADLSSRVSA--TSSHQGSPSFVLPARTPIRSNNPTNPT 516
            ALEEERDGLSHILGRERSHG+GLEQLIEASRLREASVAAEQRQLAREK+ LE+KAA+L +EL QARDCLAD+SSR+S   T S +G        R    SN+P  P+
Sbjct:   43 ALEEERDGLSHILGRERSHGSGLEQLIEASRLREASVAAEQRQLAREKDLLESKAAKLEDELGQARDCLADMSSRMSMSMTVSRRGGEG----ERDTSSSNDPETPS 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14443.2672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYV9_9PHAE1.780e-5075.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTR0_ECTSI1.900e-2670.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14443contigH-paniculata_contig14443:1066..5188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionbasal body protein
Ec32 orthologEc-28_003160.1
Exons5
Model size1119
Cds size1119
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14443.2672.1prot_H-paniculata_contig14443.2672.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14443 1066..5188 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929151.625154-CDS-H-paniculata_contig14443:1065..14831622929151.625154-CDS-H-paniculata_contig14443:1065..1483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14443 1066..1483 -
1691480750.4357197-CDS-H-paniculata_contig14443:1065..14831691480750.4357197-CDS-H-paniculata_contig14443:1065..1483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14443 1066..1483 -
1622929151.6367066-CDS-H-paniculata_contig14443:1639..19771622929151.6367066-CDS-H-paniculata_contig14443:1639..1977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14443 1640..1977 -
1691480750.4454145-CDS-H-paniculata_contig14443:1639..19771691480750.4454145-CDS-H-paniculata_contig14443:1639..1977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14443 1640..1977 -
1622929151.6754348-CDS-H-paniculata_contig14443:2434..25961622929151.6754348-CDS-H-paniculata_contig14443:2434..2596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14443 2435..2596 -
1691480750.4548225-CDS-H-paniculata_contig14443:2434..25961691480750.4548225-CDS-H-paniculata_contig14443:2434..2596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14443 2435..2596 -
1622929151.7229445-CDS-H-paniculata_contig14443:4067..41371622929151.7229445-CDS-H-paniculata_contig14443:4067..4137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14443 4068..4137 -
1691480750.4644897-CDS-H-paniculata_contig14443:4067..41371691480750.4644897-CDS-H-paniculata_contig14443:4067..4137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14443 4068..4137 -
1622929151.7353277-CDS-H-paniculata_contig14443:5057..51881622929151.7353277-CDS-H-paniculata_contig14443:5057..5188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14443 5058..5188 -
1691480750.4739888-CDS-H-paniculata_contig14443:5057..51881691480750.4739888-CDS-H-paniculata_contig14443:5057..5188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14443 5058..5188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14443.2672.1

>prot_H-paniculata_contig14443.2672.1 ID=prot_H-paniculata_contig14443.2672.1|Name=mRNA_H-paniculata_contig14443.2672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=373bp
RKAENLSQQLLRCGRRIEAVVAENKRLVADIRAQRHHANAMVERIRTQQG
HSATAGQEVNSLRARLQALEEERDGLSHILGRERSHGTGLEQLIEASRLR
EASVAAEQRQLAREKERLETKAARLSEELMQARDCLADLSSRVSATSSHQ
GSPSFVLPARTPIRSNNPTNPTPTNTRMGSSTTNSNENSPAFTDTSSAAA
AAARATADIWNRRIPFGSVGSGADNHNGNDSGNTRSFSDIMMMMGGGGGG
GGGGGTNASPEYEREQEEKTPSKRSGHSRDGAASSFQQAGRSGGGRGGRG
RDERDGDFGNSGGDALWEVGGPAAGVAAAGGVGAGGRSEEQEEDSGMFDL
EDVRGFVRRESQRLSESVRESRS
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mRNA from alignment at H-paniculata_contig14443:1066..5188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14443.2672.1 ID=mRNA_H-paniculata_contig14443.2672.1|Name=mRNA_H-paniculata_contig14443.2672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4123bp|location=Sequence derived from alignment at H-paniculata_contig14443:1066..5188- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAAGGCGGAGAACCTATCGCAGCAATTGCTGAGGTGCGGAAGACGGAT
AGAGGCCGTCGTCGCGGAGAACAAAAGGCTCGTCGCCGACATCCGGGCGC
AACGGCACCACGCCAATGCTATGGTTGAAAGGTTTGTTCATTACTGGTTT
TAACTGAAGGAACTGTATTTTTTTATTATTTTCTTTTACCTCCGGAAGGC
TAAGGCAAAAACCTCTATCCGATGCTTCGACACCGAAGTACGTCTACGTT
TCCATTTATAGAACAGAGTTATTTGTTCCTCTGCGGGGTAGGCGCCACCC
CGGTTCGGCTTAACCAGGTAGACAGTGTGGAGGTTGCACCCACCAAAAGA
CCTCTGACTAGACTTCCAGTCATGCTCAGTTCACGAGCGACCCTACCCGT
TCGGGTGTAGGTCCATGGTACTGTATACTTTTATCTCTTTTTTTTTTTAC
GTTTAATTGTTTTTGTTCACAGCTGATTTTTCGTCTTTTCCTCCAAAAAA
GATGGACGTGTCTTTAGCGGATGCGTCCACTTTTATTTTTCCAGCAGTCT
CTCTTTTATTCACCGAACACATGAACGATTATTGGCCTGACCACATTCTG
CGCACTGTCAGAGGGCTAATGTGATGAATGTAAAAAAAATGAACTTATAG
ACTTCAAAGTGGTTTTGCCGTAAATAGCTTGATCATTGTGACGAAACAAA
ACAATACTTTGTTCAGTACTATTATTGCCATCCGCCTATGTGCAGACTCG
GTTATGGCTATTGATTGGCAAGAACAAGATGTAATAGTGTCCCAAAAGAG
TCTTTCACTGTAAGATCAAACAAACTATACTGTACTGTACTGCACTGTCT
GTTGTTATATTTTCTTTGGACCATGACTATGGCTGTAATTATGACCGCCA
ATGACAATGACACAAACAGCTAGACCCACACGAATAACTGATTCCGTGTT
TAGAATCACCATAGAAAACATTACAGTACTGAAAAGGTTGCCCGGAAATT
CTAGTTTGTCACACACGTAACAGGGTCGAACTCGTGCTTTTCTATAAACA
GAATACGGACGCAGCAGGGCCACAGCGCCACCGCCGGCCAGGAGGTGAAC
TCGTTAAGGGCACGGCTGCAGGTGAATCACAGTAAAAATTGATGCAAAGG
GGAGCACACATGTCTCAGTTTAGGCACCACACATTCTCCCCTGCTTCCCT
TTCCTTGCCTTTGCTGGAGATAACACGGGTTTTATCTGCCCTTTGACTGC
ACTGAACTATCAAGTGTCAACCCATGCGGTCCCTTGACCCCCATGATTGG
GCACGATTGGCCAGATTGCCTCATGTGTGTCTTGTCAGTGGCCGTGGAAG
TTGAATAGAACGGAGTAATATATGCTGTAGGAAGTTCTATTTGGCATGCA
TATGTTTGAAAGAGGGGATGTGGGTGATATAGCGGTCCCGCAAGGGTGTA
CATTGTCTTCAATACTATTCCAGGTGTTTTATCAACGATATGCTGGTGGT
GGTGGGCAGAGCTGGGCACCTACTTCCTGAAAATGGGAAGAGACGGAAGA
AATTTGAAGTGGCAGTATAGGCTACAGAAAAGGGGAAAGAGAGAGAGCCA
AAAATTGCACGAATAGTGGAGTCGAACTCACTTCAAAAGGGTAGAAGGCC
TACGGAATGGATTGTCGTGGTAGAGAAAGTATGGAATTGATTGGAAATTT
CTACAGCAAGGGCGATGATGAGTAAAAACATGTGCGGGGGTTTAAGGAGG
AATTAGCAGGTGCAATTGTGGTTAGAGAAGAACAAAGGATGAGAAGAAAC
GCTGCAAGTAAGGAAGGTTTGGAAGTATATTGAAGACTGGGCGAAGGGAC
AGAGTTGACGGGGTACCTATATGAACCATTAGATGCAGGCACACAGTTGA
AAGTCAAATTTCGGACGAGGGATCTTGATCTCAAGGAACGTAGGAAGCGA
CTCAGGAAGTAGACGAGAACGGCGACGATAAGTTCGAGTATGACTGACTG
CCGCAGTGCGTGCAAGGACTGAATTCACATGGTGAGAGAGAAGTCTGTCT
ATATGAGGGAATTAGACAAAACCGAAGGATGCTATTGAAAGGTATTGGAA
GCCCGGAATTGCGAAGAGAAGGCTATAACGGTTCTAGGAGATCGAAATTT
GCCTGAACACGCGAGGGTTGAGGTAGATAGAATGGGCGAAAGAATTTCAG
GCCACATTTGGCAAGGTAGGAAAGAGTGATTGGACCATCGGATTTTCCTC
TGATGAGAATGAAGCTCCGTCCTTCGAAGGACGCGTGGCCAAAGATCTAA
CAACCTCGACAGGCGAAGCATGAGTTGACGTTCCCACCCCTTTTTCCTAT
TGCCGGTTTTTGAAACTCTAACGACTCCAGGGGGATGTGGCGCTTGAACT
TGAAGATAGATGCCCTCTTGAAAAAATATCCGATCAAGTGAAGAGGTTGC
CATGATAATAGTATCCCCTTTGTGTAGGTTGTTTTTACTTGCTCGTTAGT
CTCTTTCAGTACCACATAAAGTACGTACACCCGACCTCCATCCCACCCCA
TCCCCACGTATTTTCATCTCAAAACATTCCCACTATATGTAGGCCCTAGA
AGAGGAAAGGGACGGATTGTCGCACATCCTCGGCCGGGAGCGAAGTCACG
GCACGGGCTTGGAGCAGCTTATTGAGGCAAGTCGGCTTCGGGAGGCTAGC
GTTGCAGCGGAGCAGAGACAGCTGGCCAGAGAGAAAGAGCGTTTGGAGAC
TAAGGTGTGGCGTGATGAAAGTATTTCTATGTTTTTTTCGGTTGACGATC
GCGTTTGGTGGCATGTTGTGTTGTTTCGTTTTGTTTCTGAGACCGTACTT
GTACACTAGGTACTACGAGGATTTTAATGTTTCGTCGGTATTGTTCCGGA
GCTTTGCGTATAACGTTTACCCGCAAACGTGCGAACAGTCTGCTTGATCT
CCTTGCAATATTCGCATGTTCATGTCGAGCACATTCTATTTTATGTTACA
TTCGCTTACGTTTAACCACTAGAGGTAAAGAGTTCGAGTGAGAGTTCACT
CTACTATCCTGCATTCGTACTTTGGTTAAGGCTATTAGGAGAGGCTCATT
CTTTGCAGATCTCAACCTGTCCCCTCTCGACTTCCCTCACCACCACTTCC
CACCCTCTCCTCTCACCGATCCCACTCACCCCCTGCTACCCCCCCAAAAA
AACAACGGAAGGCGGCGCGGCTTTCAGAAGAGCTAATGCAGGCAAGAGAC
TGCCTCGCGGACCTCTCCTCTCGCGTGTCCGCTACATCGTCCCATCAGGG
CTCGCCCTCTTTCGTTCTCCCCGCCAGAACCCCAATCCGCTCCAATAATC
CCACTAACCCCACCCCCACCAACACCCGAATGGGATCTTCTACCACAAAT
AGCAACGAAAATTCTCCCGCATTTACGGACACATCCTCTGCGGCTGCCGC
TGCGGCTCGAGCCACGGCCGACATCTGGAATCGACGAATTCCCTTTGGTT
CGGTCGGTAGCGGAGCCGACAACCACAACGGCAACGACAGCGGTAACACG
TCGACAATCATCGGTGCTGCCGGCGAATCAGCGTTTGGCCTAAGCGTGAG
TGACCCTCGCTTTGGTTTGAGCTTGGCGCGGGGGGGGGGGACGATGGCGG
CACGGGGGCACAGCAAAGGTGATGGCGACGGTATGATCGCGCGTCAGAGA
AACAGACGGTCCTTTTCGGATATAATGATGATGATGGGTGGTGGTGGTGG
TGGTGGTGGTGGTGGTGGTACGAACGCGTCCCCTGAATACGAGCGAGAGC
AGGAGGAGAAAACGCCTTCGAAAAGATCGGGACACTCGCGCGATGGTGCT
GCTTCCTCGTTCCAACAGGCCGGGAGAAGTGGTGGTGGTCGGGGCGGTAG
AGGCAGAGATGAGCGAGACGGAGATTTCGGTAACAGTGGCGGCGATGCGC
TGTGGGAGGTTGGGGGACCCGCGGCCGGGGTGGCTGCGGCGGGGGGGGTG
GGGGCAGGTGGTCGGAGTGAAGAGCAGGAGGAGGATAGCGGGATGTTTGA
TCTGGAAGATGTGCGGGGCTTTGTGAGGAGAGAGAGTCAGCGCTTGAGCG
AGAGCGTTCGTGAGAGCAGGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14443:1066..5188-

>mRNA_H-paniculata_contig14443.2672.1 ID=mRNA_H-paniculata_contig14443.2672.1|Name=mRNA_H-paniculata_contig14443.2672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2238bp|location=Sequence derived from alignment at H-paniculata_contig14443:1066..5188- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAAGGCGGAGAACCTATCGCAGCAATTGCTGAGGTGCGGAAGACGGAT
AGAGGCCGTCGTCGCGGAGAACAAAAGGCTCGTCGCCGACATCCGGGCGC
AACGGCACCACGCCAATGCTATGGTTGAAAGCGAAAGGCGGAGAACCTAT
CGCAGCAATTGCTGAGGTGCGGAAGACGGATAGAGGCCGTCGTCGCGGAG
AACAAAAGGCTCGTCGCCGACATCCGGGCGCAACGGCACCACGCCAATGC
TATGGTTGAAAGAATACGGACGCAGCAGGGCCACAGCGCCACCGCCGGCC
AGGAGGTGAACTCGTTAAGGGCACGGCTGCAGAATACGGACGCAGCAGGG
CCACAGCGCCACCGCCGGCCAGGAGGTGAACTCGTTAAGGGCACGGCTGC
AGGCCCTAGAAGAGGAAAGGGACGGATTGTCGCACATCCTCGGCCGGGAG
CGAAGTCACGGCACGGGCTTGGAGCAGCTTATTGAGGCAAGTCGGCTTCG
GGAGGCTAGCGTTGCAGCGGAGCAGAGACAGCTGGCCAGAGAGAAAGAGC
GTTTGGAGACTAAGGCCCTAGAAGAGGAAAGGGACGGATTGTCGCACATC
CTCGGCCGGGAGCGAAGTCACGGCACGGGCTTGGAGCAGCTTATTGAGGC
AAGTCGGCTTCGGGAGGCTAGCGTTGCAGCGGAGCAGAGACAGCTGGCCA
GAGAGAAAGAGCGTTTGGAGACTAAGGCGGCGCGGCTTTCAGAAGAGCTA
ATGCAGGCAAGAGACTGCCTCGCGGACCTCTCCTCTCGCGTGTCCGCTAC
ATCGTCCCATCAGGGCTCGCCCTCTTTCGTTCTCCCCGCCAGAACCCCAA
TCCGCTCCAATAATCCCACTAACCCCACCCCCACCAACACCCGAATGGGA
TCTTCTACCACAAATAGCAACGAAAATTCTCCCGCATTTACGGACACATC
CTCTGCGGCTGCCGCTGCGGCTCGAGCCACGGCCGACATCTGGAATCGAC
GAATTCCCTTTGGTTCGGTCGGTAGCGGAGCCGACAACCACAACGGCAAC
GACAGCGGTAACACGCGGCGCGGCTTTCAGAAGAGCTAATGCAGGCAAGA
GACTGCCTCGCGGACCTCTCCTCTCGCGTGTCCGCTACATCGTCCCATCA
GGGCTCGCCCTCTTTCGTTCTCCCCGCCAGAACCCCAATCCGCTCCAATA
ATCCCACTAACCCCACCCCCACCAACACCCGAATGGGATCTTCTACCACA
AATAGCAACGAAAATTCTCCCGCATTTACGGACACATCCTCTGCGGCTGC
CGCTGCGGCTCGAGCCACGGCCGACATCTGGAATCGACGAATTCCCTTTG
GTTCGGTCGGTAGCGGAGCCGACAACCACAACGGCAACGACAGCGGTAAC
ACACGGTCCTTTTCGGATATAATGATGATGATGGGTGGTGGTGGTGGTGG
TGGTGGTGGTGGTGGTACGAACGCGTCCCCTGAATACGAGCGAGAGCAGG
AGGAGAAAACGCCTTCGAAAAGATCGGGACACTCGCGCGATGGTGCTGCT
TCCTCGTTCCAACAGGCCGGGAGAAGTGGTGGTGGTCGGGGCGGTAGAGG
CAGAGATGAGCGAGACGGAGATTTCGGTAACAGTGGCGGCGATGCGCTGT
GGGAGGTTGGGGGACCCGCGGCCGGGGTGGCTGCGGCGGGGGGGGTGGGG
GCAGGTGGTCGGAGTGAAGAGCAGGAGGAGGATAGCGGGATGTTTGATCT
GGAAGATGTGCGGGGCTTTGTGAGGAGAGAGAGTCAGCGCTTGAGCGAGA
GCGTTCGTGAGAGCAGGAGCACGGTCCTTTTCGGATATAATGATGATGAT
GGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTACGAACGCGTCCCCTG
AATACGAGCGAGAGCAGGAGGAGAAAACGCCTTCGAAAAGATCGGGACAC
TCGCGCGATGGTGCTGCTTCCTCGTTCCAACAGGCCGGGAGAAGTGGTGG
TGGTCGGGGCGGTAGAGGCAGAGATGAGCGAGACGGAGATTTCGGTAACA
GTGGCGGCGATGCGCTGTGGGAGGTTGGGGGACCCGCGGCCGGGGTGGCT
GCGGCGGGGGGGGTGGGGGCAGGTGGTCGGAGTGAAGAGCAGGAGGAGGA
TAGCGGGATGTTTGATCTGGAAGATGTGCGGGGCTTTGTGAGGAGAGAGA
GTCAGCGCTTGAGCGAGAGCGTTCGTGAGAGCAGGAGC
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