mRNA_H-paniculata_contig1444.2668.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1444.2668.1
Unique NamemRNA_H-paniculata_contig1444.2668.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1444.2668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1444contigH-paniculata_contig1444:11776..15200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size689
Cds size663
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1444.2668.1prot_H-paniculata_contig1444.2668.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1444 11776..15175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929149.088354-CDS-H-paniculata_contig1444:11775..121531622929149.088354-CDS-H-paniculata_contig1444:11775..12153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1444 11776..12153 -
1691480750.1838305-CDS-H-paniculata_contig1444:11775..121531691480750.1838305-CDS-H-paniculata_contig1444:11775..12153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1444 11776..12153 -
1622929149.099432-CDS-H-paniculata_contig1444:14890..151751622929149.099432-CDS-H-paniculata_contig1444:14890..15175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1444 14891..15175 -
1691480750.1942437-CDS-H-paniculata_contig1444:14890..151751691480750.1942437-CDS-H-paniculata_contig1444:14890..15175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1444 14891..15175 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929149.1088727-UTR-H-paniculata_contig1444:15175..152001622929149.1088727-UTR-H-paniculata_contig1444:15175..15200Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1444 15176..15200 -
1691480750.2035756-UTR-H-paniculata_contig1444:15175..152001691480750.2035756-UTR-H-paniculata_contig1444:15175..15200Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1444 15176..15200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1444.2668.1

>prot_H-paniculata_contig1444.2668.1 ID=prot_H-paniculata_contig1444.2668.1|Name=mRNA_H-paniculata_contig1444.2668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
MRAKYGTPHNHHHHHHHHHHHHHHHHHDFACAAAYGLIAMAATAGAAVVV
PGGGGNTATQHAHHHRPVAFVTSSPLPLRSHGLRRLEAGHAQWVKAFSMR
VALAAAPPLVIPSSELTTNTTPHTTPKVALLVQPPITMTSPTTDKPTGSI
VGAASGLPHQRRRRRSSGSGTSEGSSSGVGVADYTGFGSAGGGGGGDGTK
WRTIPGGGLVAGGGKEDGGEG
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mRNA from alignment at H-paniculata_contig1444:11776..15200-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1444.2668.1 ID=mRNA_H-paniculata_contig1444.2668.1|Name=mRNA_H-paniculata_contig1444.2668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3425bp|location=Sequence derived from alignment at H-paniculata_contig1444:11776..15200- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGAACACTCTCGGCACAGATACCATGCGGGCGAAGTACGGCACACCCC
ATAATCATCACCATCATCACCATCACCACCATCACCACCATCATCATCAC
CATCATGATTTTGCGTGTGCTGCTGCCTACGGCTTGATTGCAATGGCAGC
TACGGCTGGGGCTGCGGTGGTGGTACCAGGTGGAGGAGGCAACACTGCAA
CTCAACATGCCCACCACCATCGCCCTGTCGCGTTTGTGACTTCCTCGCCT
CTTCCGCTTCGTTCACATGGGCTAAGGCGGCTGGAGGCTGGGCATGCGCA
GTGGGTGAAGGTGTGATTGTGTGTTAGATGTGTTGCGTAGTTATGGGTGC
GTATTTATTGTATATTTTCAAAAGTCAAGGGTATGTGCATTTGCTGTCGT
ACTGACTCTCTTTACTGACTGTTGGTGACTGACTGTAAGAGAATCTTTGT
ACATACACAGTACAGTATGTGTACCTGATCTCCTCTACTTGATGTTGTAA
TTGATGTTCTTGGATTGGAGCAAAGATTGCAGTTTCCATATCAAGGTGCA
CCGTGTATAGCTTTCGGTGCCATACCACACGCGTATTTAAACCCAGACGG
AGACGTAGCCCTCGACTCCGATTGTCCCGAGAGTACAAGAGTCTGTAATG
TCGCTTGTCGATAGATCTCGATGCGATCTTTCCAGCAACATAACCTTTGG
GTCTTACAGTATACCCTGGTAGCATTATTGAACCTGTATTATAGATGGTT
TTCGAGAAATTCGAGTTGGACAAACTCTTTTTGGTGGTCTCGGTGTACCA
TGTAAGTGTGTCAATCATCGTTCCACACATGGGACGTATCAAATCGTTCA
CGATGTGTACTGATCATCTCATGGACGGTTCCAGATCTTTTGCACGAATC
GATCATAGGGACTCGTACAATCGAACAATCTGAACAATTAGAACGATCTT
CTCGGTCCAGACATTTCGTCTGTGGGTTCGTTACATAGAGTGAAATAGCG
TATCTTTGTCCACGGGTAATCCGTACGATCCGCATTGTTGGCATGCTTTC
ATCCACGACTGGTCCGAGTGCTCCTCACATGTATCCTTCGGCTCATTCCG
CGCAACTCGACCTAAACACAAACGCATACATTCATTCAAGTATATCATGT
GCATAGCTGTGCTAATCTTTTCACGGCGCTCACGGATCATTTGCATTGAT
AGATTCGGATAATACATGCAATCCGGACCGTCCCCGCACGTTTTTGCACA
AGAGATCCATGCAATCCATATCGCTAGCACGTGTACATCCACCGCTGTAC
CCTATGGATCATTAAGGCATATTTGTCAATGATTGATGCATACGAGCCGG
CTCGCACGGATATTGAATAATTTGATGTGCGCATCGGTAGCATAGCAGTA
GTCGGTGTCGTACAGTAGCCTTGCCTCCGCACAACACACGCAGGCGCGCA
CCATTTATCCCCCCACAAGAATTTCTTCGAAGATGGAAAAAAGAAATCGG
GAAACGCTTGAACATAGTCACCGGTCACCCGCAACCTCCGTTGTCAGAGC
GACAGTCACAAGCTCCGCCCTCATTTTTAAGTTAGCACAGACCCATGGAC
TCGAAATGTCGACAGATTATGCAACAAACCTGCTCCGGCTGTCCTTGAGT
CGAGTCGTCGATGACAGAGTTATGAACTGCCCGCGAGTCTCAAAAGAGCT
GTCGCATTGGAACTCGCCTGTTCCAAAAGCCTTTTTTTTCATCCTAGGAC
GCGACCAGAGGGGTTTTGATGTGAGCTTTTCCGCTTGCGCTTCGTCAGTT
TGAGGTTACGTAGTCTGGTACAGTAGACGCTTCGTTGTTGTGGAAATTTC
CTCGTCCCATGCCTTTAGTTTCGCTCTTGCAACCGGTTGAATTCCAAGTC
CTAGTGTATTTCAGTGTGTTTTGTGTTACGAGCGTTTGTGCCATCCATTT
GTGCATGTTGTAAAAATGTCACATGGGTCTCAAGTCAACTTTTTCTGATG
GATCATGTTCCATCTGCAGCGGGTACCAATAGATCAAAGTGGATGGTTGG
TGCCCACGTCCAAGCTGTATTTCATTTGCTGTAGGAATCCTTCAGGGGTG
TTCTCGGTGTTGCATGGTGCATTTTTCGGAACTTGTGAAAACCGGGTACT
AAAGAAGTACCGCTGAGAAAAAACATTCCTAGAATTATCACGATAAAGGC
GCACTGTGGGAACGATATCTCGGTGTTAGTTTTTGCGAAGTTCAAGTGCT
GATCGTGTTATCCCGAAAGTGTCGTGCACGGTACTTTACCACGGTAAACC
AACTTCTGAGTATCGTGAAAAATTACCTTGGCGGTAGCAGGTTTTGTTGT
ACGCGAATTGTAGCGGTGGTGATAGGGAAATGAGCATTTGTTCATGTACA
GCTCTCTCAGCATAGTGTACTCCAAGGTCGCACAATGGGGTTAGCTAGGC
CCCAGGCTATGATGGGCCACACTCGAAAACATGAGTACATTATGGATATA
CGGGGACTGCACAACGAATGTTTATCCCCTATTTATTGTCCGATATGTAA
TCACATACTTTGATGATTTTTCCGCAATTAAAACGTTTCGATTGTACCTG
TTGGTCACAGGAAATTGTCAGATTACACGGTTGTTGGGTGGTTTTCTCAT
CTGGATTCTTTGATTCGGCCTTAATATGCGTATGATACAGGCTGTATTGG
CATAACGGCTGCGAACGTTCCTGGGATTTTCTCGGAGTTATATTATTCTG
ATTCTTGTTATGGATTGGGTGGGGACAAGACTAAGCGAGCCAATGCCCCC
CCCCCCCAGCCCTTGTCACTCCCACGTGTACACCCTAATGACGTCTCCAA
AACTCTTTCTTTCCACTCGTGTTACAAGCCCAAACCCGTCGAAGCCACGA
GGCATCGAACAGAAATAATATACATGAAGTTCATCCTAAGTATTAATTAT
TCGACACGAGAGTATGACAAACTCTCCTCCCCCCCCTTCCCTCTCCCATG
CACACCGTCCCTTCGTCGTATATTCTTCCTCCAAATATTCGATGCAGGCG
TTCTCCATGCGGGTTGCCTTGGCAGCAGCGCCCCCGCTCGTAATACCCAG
CTCGGAACTCACAACCAACACCACACCTCATACAACGCCAAAAGTTGCTC
TGCTAGTGCAACCCCCGATTACTATGACGTCGCCGACGACTGACAAGCCG
ACAGGCAGTATAGTAGGAGCGGCATCGGGATTGCCTCATCAGCGGCGAAG
GCGCCGCTCGTCGGGCAGCGGCACCAGCGAAGGAAGCAGCAGTGGCGTCG
GCGTGGCAGACTACACGGGCTTCGGGAGTGCTGGCGGCGGCGGGGGCGGC
GATGGCACGAAGTGGAGGACCATCCCTGGAGGCGGCCTTGTTGCGGGAGG
GGGCAAAGAGGACGGGGGAGAAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1444:11776..15200-

>mRNA_H-paniculata_contig1444.2668.1 ID=mRNA_H-paniculata_contig1444.2668.1|Name=mRNA_H-paniculata_contig1444.2668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig1444:11776..15200- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGGCGAAGTACGGCACACCCCATAATCATCACCATCATCACCATCA
CCACCATCACCACCATCATCATCACCATCATGATTTTGCGTGTGCTGCTG
CCTACGGCTTGATTGCAATGGCAGCTACGGCTGGGGCTGCGGTGGTGGTA
CCAGGTGGAGGAGGCAACACTGCAACTCAACATGCCCACCACCATCGCCC
TGTCGCGTTTGTGACTTCCTCGCCTCTTCCGCTTCGTTCACATGGGCTAA
GGCGGCTGGAGGCTGGGCATGCGCAGTGGGTGAAGATGCGGGCGAAGTAC
GGCACACCCCATAATCATCACCATCATCACCATCACCACCATCACCACCA
TCATCATCACCATCATGATTTTGCGTGTGCTGCTGCCTACGGCTTGATTG
CAATGGCAGCTACGGCTGGGGCTGCGGTGGTGGTACCAGGTGGAGGAGGC
AACACTGCAACTCAACATGCCCACCACCATCGCCCTGTCGCGTTTGTGAC
TTCCTCGCCTCTTCCGCTTCGTTCACATGGGCTAAGGCGGCTGGAGGCTG
GGCATGCGCAGTGGGTGAAGGCGTTCTCCATGCGGGTTGCCTTGGCAGCA
GCGCCCCCGCTCGTAATACCCAGCTCGGAACTCACAACCAACACCACACC
TCATACAACGCCAAAAGTTGCTCTGCTAGTGCAACCCCCGATTACTATGA
CGTCGCCGACGACTGACAAGCCGACAGGCAGTATAGTAGGAGCGGCATCG
GGATTGCCTCATCAGCGGCGAAGGCGCCGCTCGTCGGGCAGCGGCACCAG
CGAAGGAAGCAGCAGTGGCGTCGGCGTGGCAGACTACACGGGCTTCGGGA
GTGCTGGCGGCGGCGGGGGCGGCGATGGCACGAAGTGGAGGACCATCCCT
GGAGGCGGCCTTGTTGCGGGAGGGGGCAAAGAGGACGGGGGAGAAGGAGC
GTTCTCCATGCGGGTTGCCTTGGCAGCAGCGCCCCCGCTCGTAATACCCA
GCTCGGAACTCACAACCAACACCACACCTCATACAACGCCAAAAGTTGCT
CTGCTAGTGCAACCCCCGATTACTATGACGTCGCCGACGACTGACAAGCC
GACAGGCAGTATAGTAGGAGCGGCATCGGGATTGCCTCATCAGCGGCGAA
GGCGCCGCTCGTCGGGCAGCGGCACCAGCGAAGGAAGCAGCAGTGGCGTC
GGCGTGGCAGACTACACGGGCTTCGGGAGTGCTGGCGGCGGCGGGGGCGG
CGATGGCACGAAGTGGAGGACCATCCCTGGAGGCGGCCTTGTTGCGGGAG
GGGGCAAAGAGGACGGGGGAGAAGGA
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