mRNA_H-paniculata_contig14438.2666.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14438.2666.1
Unique NamemRNA_H-paniculata_contig14438.2666.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14438.2666.1 vs. uniprot
Match: D7FP83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP83_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.630e-18
Identity = 49/67 (73.13%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:  241 DAAGDNTFFESVKTSLPGLDMFDPSVFDIRMVLAVLVAVALVAYAVFRLFVRK*V--DIFFVFCRIS 435
            D AG+ TFFESVKTSLPGLDMFDPSVFDIRMV+ VL  V+L+AYA+FRLFVRK V  D FF    IS
Sbjct:   14 DTAGEGTFFESVKTSLPGLDMFDPSVFDIRMVMGVLACVSLLAYAIFRLFVRKVVGEDDFFADLGIS 80
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BLAST of mRNA_H-paniculata_contig14438.2666.1 vs. uniprot
Match: A0A835Z738_9STRA (Pre protein translocase subunit Sec66-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z738_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.350e-5
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  265 FESVKTSLPGLDMFDPSVFDIRMVLAVLVAVALVAYAVFRLFVRK 399
            FE +KTSLP LD+FDPSVFD+RMVL  L    L++Y  +RL++ K
Sbjct:   31 FEDIKTSLPRLDIFDPSVFDMRMVLGALTLFGLLSYFAYRLYMNK 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14438.2666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP83_ECTSI5.630e-1873.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z738_9STRA1.350e-557.78Pre protein translocase subunit Sec66-domain-conta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14438contigH-paniculata_contig14438:984..5351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue7.4e-15
Seed eggNOG ortholog2880.D7FP83
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Preprotein translocase subunit Sec66
EggNOG OGs2BH0U@1,2S501@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size541
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14438.2666.1prot_H-paniculata_contig14438.2666.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14438 3748..5212 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929148.545458-UTR-H-paniculata_contig14438:983..10861622929148.545458-UTR-H-paniculata_contig14438:983..1086Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14438 984..1086 +
1691480750.1242843-UTR-H-paniculata_contig14438:983..10861691480750.1242843-UTR-H-paniculata_contig14438:983..1086Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14438 984..1086 +
1622929148.5581245-UTR-H-paniculata_contig14438:3694..37471622929148.5581245-UTR-H-paniculata_contig14438:3694..3747Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14438 3695..3747 +
1691480750.139359-UTR-H-paniculata_contig14438:3694..37471691480750.139359-UTR-H-paniculata_contig14438:3694..3747Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14438 3695..3747 +
1622929148.5939393-UTR-H-paniculata_contig14438:5212..53511622929148.5939393-UTR-H-paniculata_contig14438:5212..5351Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14438 5213..5351 +
1691480750.1728356-UTR-H-paniculata_contig14438:5212..53511691480750.1728356-UTR-H-paniculata_contig14438:5212..5351Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14438 5213..5351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929148.5716918-CDS-H-paniculata_contig14438:3747..38891622929148.5716918-CDS-H-paniculata_contig14438:3747..3889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14438 3748..3889 +
1691480750.1495836-CDS-H-paniculata_contig14438:3747..38891691480750.1495836-CDS-H-paniculata_contig14438:3747..3889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14438 3748..3889 +
1622929148.5833032-CDS-H-paniculata_contig14438:5108..52121622929148.5833032-CDS-H-paniculata_contig14438:5108..5212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14438 5109..5212 +
1691480750.1600218-CDS-H-paniculata_contig14438:5108..52121691480750.1600218-CDS-H-paniculata_contig14438:5108..5212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14438 5109..5212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14438.2666.1

>prot_H-paniculata_contig14438.2666.1 ID=prot_H-paniculata_contig14438.2666.1|Name=mRNA_H-paniculata_contig14438.2666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MEGEADNMAGKTFTPGMDGGAAFGGAPGDAAGDNTFFESVKTSLPGLDMF
DPSVFDIRMVLAVLVAVALVAYAVFRLFVRK*
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mRNA from alignment at H-paniculata_contig14438:984..5351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14438.2666.1 ID=mRNA_H-paniculata_contig14438.2666.1|Name=mRNA_H-paniculata_contig14438.2666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4368bp|location=Sequence derived from alignment at H-paniculata_contig14438:984..5351+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCTATCACCATCGTCACAGGTTGTCTATGGTAGGCTGGCATTGTGATA
TATTGGGCGAGCTGTTGACAGGACGCTGGTCATAGTAGGTTCTGGTATTT
GAGGTGAGGGATGTTGTGTTCTATGCCGTATCTTGTGTATTGGTTATTGC
AAGAGGTATTAGAGAAGGGTGTGTTGTGTGCGGTTAGTTCGATGTGTGTG
AACGGGAGTTGGTTCCACAGCAGCATGCATGGGCGAAGCAGCGTACCGGT
TGGTTTGGCGCACATCACTACATCTCGCTTGATCTGGTGTTATCCTAATG
TGTCATCAAGGTGACATCATCCTGCGGTACTTGTCTATTCGGTGGCGCTT
CGTTCACTGGACCGCTCTGGTCCTCAAAACATACATTTTCCCCTTATGAA
GTGTAATTTACAGCATGTCCATGGTTTATGAGAGCTCCTTCGTGATTGTC
TATACTCGTCTGTTGGCTACTCGTGTTGGTGTACAATTAGGTCTCCAGAC
AATACAGGACGACCATGCTGCGACTCTCTGCCGTACGCCAATATACACCG
TATAGTAGGCACGATACTGTAGAACAGTGCGGAGCAATGCAACCCGCTGC
AGTCTACTGAATTATGGTATGTACTTGCACCCTACTGCAACCAGACAGAC
AGTGCTTGTATTCCTCACCCAACATCTTGACAATATACACCACATTTAAC
CCTTCCAGTACATGTACAGACAGTCTCGACGGTTTTGCACGAGCAAACAG
GAAATTGTAGTTTGTAAATTATGACAGTCGGCACAGGAATACAGAGACTA
CTAGGCAAGACAGTACCCATATACTAGACAGAACAGCAGTGCGCTTGTAT
TGAAGCGATTTTCTACGGAAAGCTTTCACGCACAGCAAGACAGTACAGTG
GGTAGGGCAAGACTACTTAATAGACGGCGTTGGGTTCCATATGAGCCCGC
TAACGGCTAAGTGACTGATCATACTCCTTGTCTATACCAGCTAAGCAGGG
GTAACTAGATGGAAAGCTAATCAAAATACGGATGAAGTAGTCTGTCATGT
AGACTCTACTAGTACACAGCACCTAGCGGGGCATCAAAACTCTACGGTTA
GGTTAACGCCCCCGCCGTTTACGCTTGATGGTGGATGAAGTCGTGAAGAC
TCCGACGCTATACGAATTCTGCGGATAGGTGGGTTCACTCCAGTTCGCCA
ACGAAATATTCATGCTTGTTTAAATGGAATCGCGGGCAGGCGTGGTTTCC
GCGTCTAACCCTAACCCTGTTACACGCAAATCTTTGCTGTGCCTAAAACG
GGATCTTGGCAGAGTCTTAATTGGCTAGAACTCCGCATTGATCCGCGGTC
CACACCTTAGAAGTGTCTACTCGTTGGAATCCGGGGTACCCCAATAATCA
ATCCGAGGAGATGAGGCTTTCAAATATCGATTTCGCAGTCATCGCCAAGA
ATTCTACCTCCCGGACAAATACGAATACTTGCTAATGGTTTTCACAAGAA
AATGACAGTATTCGCCTGAGGTTCAGTATGAGCTCGTGGATTCTATGTGC
CTCCCGACCATCCACGACTGCTAATATAGACTCGTATATCGAATGAACAA
GGGTGGGTACTTCATTTCATGTGTCTGCTCATTCTGAAATTCAGTCGAAT
ACTTCTTTTTTTTTGTGAAAATTATTTGCACGTATTCATATTTGTGCGGA
GGGTGAAGAATTTCACGAGTCACAACTCGGCTTACTCCACTCGTCCGTCT
GTTCAAGGAAATGTAGAAATACTTCGGTATGGAAGCATCGGATAAAGGTT
TTTGCCTTAGCCTTCCTGGGGTTAAAAAGAATAAGAAAAAGTCCACTCAT
CGGTACGATTCTTGGGAATCAAACTATAGTTTACTCAGCTCATTGCCACA
GGTCTCACGAGTCAAAATTTGGTTTATTCGTCTCATTCCTACGAATCCCG
CGAGCCAAAATTCGTTTCACTCGACTCATCTAAAAAAAGCCTCATGCGTC
AACACTCTGTTTGCTCGGAGTCACCCAACAGGCACTACCATCACCATCAC
CATCACCATCACCATCACCATCACCACCACCTCCACCATTACCATTACCA
TCACTACCACCATGAGTCGCGAGTTTTGAATCTGAGTCGTGACTCGGCAA
AAAGAAAATGACTCTTCTGGGGGTCATCGTGACACCCACCGCGAGCAAAT
CTTGTTATACCGTCACTGTATGTGGGGTCTCCGGAGATGTTGAACCTGGG
TCAGCAGTTTTTTTTTTTTACGGTTCAAGTTTTTACCGTTTCTCTTCTTT
TTCGTTTCTACCTTCCATGGATGATGATGATGATGAAATTTTCGTCGTCG
TCGTCGTCGTCGTCGTTGTCATTGTTGTCGTTGCACGAAGCTTCCAAAGG
TTGAATGTGTCCTTGTTCATTATTATTTCGTTTCTCGATGTTCCCCGTAT
TTGGTACTTCGACGTGAATTTATCTTTCATACATGTGCACCACCTCCAAA
AACCCTCTTTTAGACGAACCCTGCAACGGGTGTATCTATCTGTCTATCTA
TCTGCCTGCCTGTCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGTGTACGTACGCGTGAAAAAAACATAGTGTTTGGTCGTGTCCTTCAATG
ATCCTTCCGAAATAACAATCTCTGTCGTGTCCTTTTTATCATCACCTCTT
GTCCGTTGTAGACGCGGCCAGGTGTGGTTGTTTCTATTGAGACGTCCACC
TTCATCTGTGTACCATGGAGGGAGAGGCGGATAATATGGCGGGAAAGACG
TTTACCCCGGGCATGGACGGCGGGGCAGCGTTCGGGGGCGCGCCGGGGGA
TGCTGCAGGGGACAACACATTTTTCGAGAGCGTGAAAACTAGCTTGCCCG
GATTAGGTAAGTTTGTCAACGTATTTTTTTTTTCGCAACGGTTTTGTCTT
CCACAGAATTAGGTAAATATATCGATAGAGTCGTTTTTTTTTGTGTTTTT
TTTCAATTCCGCAACTGTTCAGTTCGTCACGAGATTAGGTATTTATGTCA
GCGGGGACTTTTTTATTTTATTTCCGAATGACTTAGTCCGTCAAGTGATT
AGTTCCCCGTGGTCCAAAGCTGAAACGTTATTAATGCTTCTATACCTGAC
CATGTATTATCGTGCAGCCGGGGGGGGGGGCGGGGCTGTGAGTTGTGAGT
TTGGTTCGATTTAGCGGTGAGGATTTAATGACATGTAGGCAGCCATAGTA
GTGACGAAAGGAGATTGGTGTCGGAGTGTCAAGACCAGATTGCCGGAGGG
TTACGTGACTTGCCTAGTCATGGCACATGGCTAGGTGTACCGAGGATACC
TTCTTGGAGAAGGTGGAGACTGGTGAAGTTGCCAGGATTATGATATCGGG
CCGACTACGTCATGACATCACCTATTTATAGTCACGAGTTTTGGCTAGGT
AGCTATAGCGTTAGATAGCTTTATCTTGGAGAGCGTCACATCAGCTCGCC
AGAGTATCATGATTCTACTGTAGCACGTGATGACACATGGGTTATATGTC
TTGTGCTCTAGATAACAACTCTCCAACCGAGGATATCAAAAGTCCTGCTT
ACCGGGGTTGGTACGCACGGAAAAATTGCGAAGTTAAGCCGTGCCGTAGC
GGTTGTATTGACATCGGATGTATAATTATAGTCCACGCAAGCTGATCGGT
TGTGCTGTTTACCCACGTGTACACTCTTAATAGTAGCCATTCTCCAATGA
CCTTATTTCCATCTTTTGCCACGAGACATTTTGGATGTCATCATGGTATA
GTATTTCGGATGGAGGCTCTCCTGGACCAGTTGGCCAGGCTTTGAGTATC
ATACGCCCACCGTCTGTTGTTGATATCGTCTTGTGGAAAAGTACTGATTA
TATGGCTGGAATAAATAGACTCCTTGTCAACTTTTTTGCGCTTGGCTTTT
TTTTTTTGTATATGTACAAAAATATTTTTCATCAAGTCATGATACCAACC
TGTTAGTTTTTGCTTGTACCTTTCCTCAATCCTATTTATATATATATATA
TATATATATATATATATATATTTCCCCCCCACTGCTCCTTCCTGTGTGCG
CTATTTTTCTCTATTTTTCGCCTAGACATGTTCGATCCTAGCGTGTTCGA
TATTCGGATGGTGCTTGCAGTGCTTGTTGCTGTGGCCTTGGTGGCCTATG
CTGTCTTCCGTCTGTTCGTACGCAAGTGAGTGGATATTTTTTTTGTCTTT
TGCCGAATATCCACTGGGGGGTGAGGGCGGCAATAGAGAACATGATCCTA
ACAAATTGTGGGTATCCTAATCGCTTGTCATGATGCTGGATTACATATTT
ATCCACGAATTTACCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14438:984..5351+

>mRNA_H-paniculata_contig14438.2666.1 ID=mRNA_H-paniculata_contig14438.2666.1|Name=mRNA_H-paniculata_contig14438.2666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig14438:984..5351+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGAGAGGCGGATAATATGGCGGGAAAGACGTTTACCCCGGGCAT
GGACGGCGGGGCAGCGTTCGGGGGCGCGCCGGGGGATGCTGCAGGGGACA
ACACATTTTTCGAGAGCGTGAAAACTAGCTTGCCCGGATTAGATGGAGGG
AGAGGCGGATAATATGGCGGGAAAGACGTTTACCCCGGGCATGGACGGCG
GGGCAGCGTTCGGGGGCGCGCCGGGGGATGCTGCAGGGGACAACACATTT
TTCGAGAGCGTGAAAACTAGCTTGCCCGGATTAGACATGTTCGATCCTAG
CGTGTTCGATATTCGGATGGTGCTTGCAGTGCTTGTTGCTGTGGCCTTGG
TGGCCTATGCTGTCTTCCGTCTGTTCGTACGCAAGTGAACATGTTCGATC
CTAGCGTGTTCGATATTCGGATGGTGCTTGCAGTGCTTGTTGCTGTGGCC
TTGGTGGCCTATGCTGTCTTCCGTCTGTTCGTACGCAAGTGA
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