mRNA_H-paniculata_contig14432.2662.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14432.2662.1
Unique NamemRNA_H-paniculata_contig14432.2662.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14432.2662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14432contigH-paniculata_contig14432:1321..6365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size3220
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14432.2662.1prot_H-paniculata_contig14432.2662.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14432 4077..6348 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929148.2829812-UTR-H-paniculata_contig14432:1320..40761622929148.2829812-UTR-H-paniculata_contig14432:1320..4076Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14432 1321..4076 -
1691480749.9735467-UTR-H-paniculata_contig14432:1320..40761691480749.9735467-UTR-H-paniculata_contig14432:1320..4076Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14432 1321..4076 -
1622929148.345696-UTR-H-paniculata_contig14432:6348..63651622929148.345696-UTR-H-paniculata_contig14432:6348..6365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14432 6349..6365 -
1691480750.0138688-UTR-H-paniculata_contig14432:6348..63651691480750.0138688-UTR-H-paniculata_contig14432:6348..6365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14432 6349..6365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929148.2978263-CDS-H-paniculata_contig14432:4076..41701622929148.2978263-CDS-H-paniculata_contig14432:4076..4170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14432 4077..4170 -
1691480749.9838061-CDS-H-paniculata_contig14432:4076..41701691480749.9838061-CDS-H-paniculata_contig14432:4076..4170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14432 4077..4170 -
1622929148.3136387-CDS-H-paniculata_contig14432:5176..53271622929148.3136387-CDS-H-paniculata_contig14432:5176..5327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14432 5177..5327 -
1691480749.9927135-CDS-H-paniculata_contig14432:5176..53271691480749.9927135-CDS-H-paniculata_contig14432:5176..5327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14432 5177..5327 -
1622929148.329554-CDS-H-paniculata_contig14432:6146..63481622929148.329554-CDS-H-paniculata_contig14432:6146..6348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14432 6147..6348 -
1691480750.0017188-CDS-H-paniculata_contig14432:6146..63481691480750.0017188-CDS-H-paniculata_contig14432:6146..6348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14432 6147..6348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14432.2662.1

>prot_H-paniculata_contig14432.2662.1 ID=prot_H-paniculata_contig14432.2662.1|Name=mRNA_H-paniculata_contig14432.2662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MRGGKTGLEKSQHPPSDGNIETWLWVVDMEGATLGDAPSLQVLRKLDSIL
FSHYPGRLQKVLLVNMPVFLRISFALTEILLEDATRSKIVVVDDGPDKLE
HYVNPAETGELFGSQNHKTTKSPAPSPAEKPSTPPPAVDFGGLFKCIA*
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mRNA from alignment at H-paniculata_contig14432:1321..6365-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14432.2662.1 ID=mRNA_H-paniculata_contig14432.2662.1|Name=mRNA_H-paniculata_contig14432.2662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5045bp|location=Sequence derived from alignment at H-paniculata_contig14432:1321..6365- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGCGACGGAATTTATGCGCGGCGGCAAGACTGGTCTAGAGAAGAGC
CAACACCCACCGTCCGATGGAAATATAGAGACATGGTTGTGGGTGGTAGA
CATGGAAGGTGCCACGCTAGGGGATGCTCCAAGCTTGCAGGTGCTGCGAA
AGCTTGACAGCATTTTGTTCTCACACTATCCTGGTCGACTGCAGAAGGTG
TTACTTGTCAACATGCCAGGTGATGATGGATGATGATTGCACCCCGACGG
TGCGACTAGATTTACGAATGCTTAGTTAGAATTATTCTACAACACGATTG
CTCCTCCGAATAAAAACACTGGGTCAACACCTTGTTCCGTTTGTATGCCC
ACACATTTTGGATCGAAGAAATAGTGTGTGTGTGTGTGTGTGTGAGTGTT
CGTCTGCACACCTTTTTTGTAACACGTCATACTTATTTGTTAATGTTCGA
GCTTACAAAACCGCTAAGAGATGATACACCAGGTTTACACGTACATACAT
GGATACTTGAAGAGAGTCCCGACCGTGCTGACACAAATGTGTTTCGGAAC
AAAATCTAAATCTTCCAGCGAAAAAATGTCGATTGCAGCGTTGACGATAT
GGTACGACTGTTTCCCCTTCATGGAGGCATGATGACGCTTGCTATTGCAG
TATTCGAAATATGTGTTGTATTCAAATGGCGAAGTTCCGCCTTGACATCT
GTATGTATATAGATATACACAATGAATTTGTGCGTCATGAGCTTGAGTAA
GTGTTGAAATATGGTGCAGAAGGGAACAAAAAATAAAATATTCAATTCCA
TCGGTTGAAAGAGATGAAATATGTAGGCTGTGCGACGGTAGTAACGTTTA
CAGCTTACAACATGCGCTGGAGACTAAGTCGCTCTTTTGCGCGACCGAAC
ACACACAAACGGCACTGTACTTGATCCGCTTCCCTTGGGCACGCAACTGC
TGCTGCTGCTGTTGCTGCGTAACCACAACGTTTCCATTTAAATTCTCGCC
GTTGTTGCTTTTCTTTTTTTTTCAATCTTGAACGAAAGTTTTTCTCAGGA
TATCTTTTGCCCTGACTGAAATTCTTCTAGAGGATGCCACTCGCAGCAAG
ATCGTGGTGGTGGACGACGGGCCCGACAAACTGGAGCATTATGTAAATCC
GGCTGAAACGGGCGAGCTATTCGGATCTCAAAACCACAAGTGAGGGAACG
AGACAGGAGACAATATCTGGATTTACTCCTGTCAGGGTTGCGTTCTTCTT
AGAGATTAGTTGAATGTATCCGCATGGAATTTCCATCATGCTCAGCCATC
TTACTGTAAATTTTATTACCTTCCGGTAATATGCCAAGTCAAACTTGGAT
GGTGGCAAGTGAAACCAATTAATCGTATGCTCGGAAAAATTGCCGTTGAC
CGTTGGACGTCAACCGTCAACCATTTACCGATACTAACGGCGGTAGAACT
GTCGAGTTCCTTCCGAAAGCCGATCAAATATTCACTTTTTACGAAAGTAG
TTGAGGGGAAACACCTATGGTACTCTTTGGTGGAAGCCCATTATAATACA
TGAAGTCTCTATATGGTGAGGAAACCCGAAATTTGGAACTTTCGTGCGGG
CAGTCAATAACGGGCCTGATCGGAAGTAAAATTAACGTTACGTCGAAATT
TCTAGCCAGTAATGTACTCTGAGAACGCCCCGTGAGCGAACGGTTCCTTG
GTTCATGATAATGTCCGAGGGAAAGAATTCCTGAGGGAGGGCAACGGCTG
TGGGTACACTCGATTCCCTCCAACCTGGTACAGGATGTACTTTGGGCAAG
TAAAACACCTCTCGTTTTTTGTTGTTCCGTACCACGAAATAAATAATTTT
TGTTCCGAAAAAGGCACTCTATATGCAGGATGAACACTTATTTACGTTCC
TAGTGAGTTCAATGAAAAATTTGTCGCTAGTGACGTACTGCATATTGAAA
AAATATGGCCCTAAAAGGTATTCCCCATAATATGGGACCTATATATAACT
GTATAGGGCCACCTGCTGTACTTGGAGTATTTCAATGAGGCTAGTAGCGC
CGTAATTCAGATTCCCCCACTCATTCTTACCTTCCCCTATGGCGTCACAA
TCATTATCATGACGTTTTGAGACAACGTCAATTATTGACCGCTAGCAACA
CCACACATACCAACACTCCGTGTTTGCATTGCCTTGCCTACATAGGACAA
CGAAATCGCCAGCCCCTTCACCCGCAGAAAAGCCTTCGACTCCCCCCCCG
GCGGTGGATTTCGGCGGTCTTTTCAAATGCATAGCGTGAATGGATTTACG
CGATAAAGCTACAGCACTTGGGCATGGAGACGAGCGGCGGGGGGCGGTAA
CGTAATCGCTGCTTTGTTCGGGGCGTCCCTAGCGACGTGCTGGTGAAGGC
GTACTGCATGCTGGCATAAAGGGAGAGAGGGAGAGAACGAGAGAGAAAGA
CAATGGCTCCCGGCGGTTCTTCTGTTCGTCTTTTTTCCCGTAGATCATGT
AATGATTGCGTGGAGAAAATACGGTTTGGCTCAGGGGGGTTGAAATCGAC
ACAAATTCCCCCCCATTTATCTAAAGGTGACCGTTTTTTTACATGGCTTT
CTTTTTACTTCTCGAAAAGTTGACGAAATGTAAAGCGTCATACCCCCCTT
CCTTTCTGTTGGCTGAATGTAGTATGTAGATCATCATCTAGCCCCACCGG
GAAGGGCAGAAAAAGGGAACGAAGATTTCTCGCGGTAGAGTACGGTAAGC
TACATCTCGCCCCCCTCTCACAAGTTACAAGTGTTTATTCTTGGCCGGAA
AACTGGGGGATAGTGAGTCATTGATAAAGGTTATATACGTCTATTTCACG
TCTAACTTTACGTCTAACCCCAGTGGCTGAAACAATCGAGCGATTCAAGC
CAAGAAATGGGTGTATTTGTGTCTCTTGCGTCTCCCCTCCCTACCTCGCA
TCCCCCCCTCTTCAAATAGCGGGCGGGAAATTGAGTTGCAAGGGTTATAC
TTGTCGGCTGCCATTCGGTTAAGTCCCGCATTTGGTGGCCAATCGGCAGG
GCTGTTGTTATTGCGTTGTTGAGTTACGTATGACGTGGTATGATAAATGG
TAGATAGGAGTGCCGTGGGGTTGCACTGTGTAATTTACTGTACACTGACG
TGCTGTAATGTGAGAAACAACAGCACCCTTTCACGTGTACCTACGGAAAC
TGTATACTGTTGTATCGAATGGGCTGCACTGGAGGAGGTATTTATGCCGA
GTTGAGCCACAGAATTGTGTCGCTGCATTAGGTCAAGATACACCGCTGGA
CAGTGCTGTGCCAAGAGACTCTTGATGAGTTTATGTCGATATTCCAGGGA
CATGAGCTGGTCTTTTGCGTGTTGGAAAATATAAGTGATACTTCACGGAG
AGTGATCTGTGCAGGAGGGGGAGAGGGGGGGTCCATCTAGCACCGTGCCG
TCCTGTATCGTATAAAAAATTACGTACCATTCATGTTCCCCGTGTACGCA
CGCAAATTTAGAAACAAATCCGCTGTAAAGTAGGTGGCGTGAAATGTTTG
CATTTTTATGGATCATTTCCGGGATAAGTGGGTGTAAACCGTGGGGGCAA
GAGGACATGGTCATTCACCGTATGGTGCGTCACCAATAGCCAGGAGGACA
GTATGTAATGCGGCAATTTTCTCTTTTTCATAAAAACGCCCCCAAGTTGG
GCGGAGTCGAGCGGGGGACCTGCTAGCTCGATAGCTTTATTAGTCAATCA
AACCTGCGCGTAGAAGACAAAAAGAGAGGTCATTGTTTCGCTCTAGATGG
GGTCATTAATATTTAAGGTCGATAACGTCTAAATATGCACACAGCTTTTG
GTACGTTTCATGTCTTCGCAGTACGGCGAAAGGAGGAGGCGCGTGCGTTT
TTTACGCCGACGGGCGGGGTCCTTCACAACCAAGTACGACCGCGCAACCA
CCTTAGGTCTCGCCGTGGAGGTTTGATTGTTCGTGTGTGTAACCAGTCTT
GTTCCAGTATGTTTCCTTGTTTTTTATCCGGTCCACTGCTCTTGTTCCGA
ATTGGGTGATGTTTTTCGTTTTCTCGCCTGTGACAGGCATGAGTCAGGGA
GTGTGTTCGAGTGTCTTCTGTTTTTCGTTTCGGCACGTGGTGTTTACCCT
ACGTTCTTCGTGTTATCTGCGGGGGGGCAAGGCGGGCGAGACCGGGAGAG
GTCAGGACAGATTGTCCTGTATGGTTAGGTTGGATACACGAATTGGTTGT
GTAGCAAGAGATATCTGTCATATTTTTCTTGTGAAGCCGTAATTGTTTTT
TTCTGTACGACCAGTTTTTACAGTACCGTACAGGTAGCTTTTTCTTCTTG
TGGACTTCTTCGAAGGAATCCAGGATTTGCCGGATTGGTTTTTCTCAAAG
CACAGCCCAAGAGGTTCTGTTTCGAGAGCCTTGGTTTCTAATATACCACG
TGCTCAAACTTGTTCAGTTAGGGTTCAACTGTCTAGTGGCGATCGACTTT
AAATATCAGTCCAGACTTGAGTGGTCGCTTGGAGAAAGGGGGGATGATTG
GAGCAGGGTTTCACCTGGGGCTAGTGGTGTACCTCTTCACCCGCGAAAAT
ACTGTTTTAGTGCGGTGAATGGATTATCAGTGCTTGGGAAGGTCAAGGGG
CAGTGCTTGTTGGATGTGATTGCCTAGCGTTACCCCCAAATAATGTGTGT
TGTTGCACTGTATCTCGGCAGCGTCAGCTAGAGCGGAGAGGGAATGTATG
GGGAGGTATGATCGAAACAGTGTTTTTTTATCGCTATTTTGTCTTGTGGC
TATCCGTAGGCGTCGCATTGCATGCGATCGAACTGATGTGTTGGATGGGA
AAAATAACACAGGACAACATGTACGAGTCGTGCACAGACCAATAGGTTCA
TGCCAAAATGCGCTAGTATTTGGATATTTTTGTGTATTACACACCTGGGG
ACTCTGCTCCACCACCCCCTGTACTGATCGCGTTGACCGCATGATCTTTC
ATCGCGCCTCGACAGTGTAGTCCTATCCATGAAGGAGGAATAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig14432:1321..6365-

>mRNA_H-paniculata_contig14432.2662.1 ID=mRNA_H-paniculata_contig14432.2662.1|Name=mRNA_H-paniculata_contig14432.2662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig14432:1321..6365- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGGCGGCAAGACTGGTCTAGAGAAGAGCCAACACCCACCGTCCGA
TGGAAATATAGAGACATGGTTGTGGGTGGTAGACATGGAAGGTGCCACGC
TAGGGGATGCTCCAAGCTTGCAGGTGCTGCGAAAGCTTGACAGCATTTTG
TTCTCACACTATCCTGGTCGACTGCAGAAGGTGTTACTTGTCAACATGCC
AGATGCGCGGCGGCAAGACTGGTCTAGAGAAGAGCCAACACCCACCGTCC
GATGGAAATATAGAGACATGGTTGTGGGTGGTAGACATGGAAGGTGCCAC
GCTAGGGGATGCTCCAAGCTTGCAGGTGCTGCGAAAGCTTGACAGCATTT
TGTTCTCACACTATCCTGGTCGACTGCAGAAGGTGTTACTTGTCAACATG
CCAGTTTTTCTCAGGATATCTTTTGCCCTGACTGAAATTCTTCTAGAGGA
TGCCACTCGCAGCAAGATCGTGGTGGTGGACGACGGGCCCGACAAACTGG
AGCATTATGTAAATCCGGCTGAAACGGGCGAGCTATTCGGATCTCAAAAC
CACAATTTTTCTCAGGATATCTTTTGCCCTGACTGAAATTCTTCTAGAGG
ATGCCACTCGCAGCAAGATCGTGGTGGTGGACGACGGGCCCGACAAACTG
GAGCATTATGTAAATCCGGCTGAAACGGGCGAGCTATTCGGATCTCAAAA
CCACAAGACAACGAAATCGCCAGCCCCTTCACCCGCAGAAAAGCCTTCGA
CTCCCCCCCCGGCGGTGGATTTCGGCGGTCTTTTCAAATGCATAGCGTGA
GACAACGAAATCGCCAGCCCCTTCACCCGCAGAAAAGCCTTCGACTCCCC
CCCCGGCGGTGGATTTCGGCGGTCTTTTCAAATGCATAGCGTGA
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