mRNA_H-paniculata_contig14429.2659.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14429.2659.1
Unique NamemRNA_H-paniculata_contig14429.2659.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14429.2659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14429contigH-paniculata_contig14429:3866..4688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.9063056-CDS-H-paniculata_contig14429:3865..39521622929147.9063056-CDS-H-paniculata_contig14429:3865..3952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14429 3866..3952 +
1691480749.7838612-CDS-H-paniculata_contig14429:3865..39521691480749.7838612-CDS-H-paniculata_contig14429:3865..3952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14429 3866..3952 +
1622929147.9219983-CDS-H-paniculata_contig14429:4352..46881622929147.9219983-CDS-H-paniculata_contig14429:4352..4688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14429 4353..4688 +
1691480749.7954898-CDS-H-paniculata_contig14429:4352..46881691480749.7954898-CDS-H-paniculata_contig14429:4352..4688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14429 4353..4688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14429.2659.1prot_H-paniculata_contig14429.2659.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14429 3866..4688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14429.2659.1

>prot_H-paniculata_contig14429.2659.1 ID=prot_H-paniculata_contig14429.2659.1|Name=mRNA_H-paniculata_contig14429.2659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
GRDSRERGSREGGRDSREGRANDADSRAKAMAAKDMERVGTRHDSSGDAT
AGTRGTGTLAVPHASSRDSREVITTPRRSSRDEVTRPGAGGVSGGSSRGV
GGYPDDNGRGARVEDDRSRTSRGGGRTIDRNNTGGSGGGGG
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mRNA from alignment at H-paniculata_contig14429:3866..4688+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14429.2659.1 ID=mRNA_H-paniculata_contig14429.2659.1|Name=mRNA_H-paniculata_contig14429.2659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=823bp|location=Sequence derived from alignment at H-paniculata_contig14429:3866..4688+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGGGACAGCCGAGAAAGGGGAAGCAGGGAAGGGGGCCGAGATAGTCG
GGAGGGGAGGGCGAACGACGCCGATTCTCGCGCCAAAGTGAGTACATGTT
GTTGGGATTGGTATTACAGCTAAGATTTGGGCATGCGTATTATTTGCAAC
TCTCAGACCGTGACAGCGATAAATGAGGACGACTGGGTGCATACCTAATG
TCTTAAATAGGGAACCTGGGTCCGTTTTTGAGCGTTTCCTTTGCTTCGGT
GCCACCGTATATCCAATTCTCTTGCGTCGAATACCGAATATCCGTAAACC
CACCATCTCCAGTAGGAACTTGCCTTTTTGTTGAAATTTTGATGTGGTTA
CTCTTTAGTGTAGTTGCTGTCATGAGCACGTATCGTCTGGCCGAACGCGT
TGCTACTCGTAACATTGTGACACTGACTGACACGATTAAGCACTGTATGC
ACGCCTAAGCAACTGCGCCCACTCTCGAACTGGCCAGGCAATGGCCGCAA
AAGATATGGAGCGGGTAGGGACGCGCCATGATTCCAGCGGCGACGCGACG
GCGGGCACAAGAGGTACTGGAACGCTCGCCGTCCCTCATGCATCATCGCG
TGACTCCAGGGAGGTCATCACTACCCCCAGACGCAGTAGTCGCGACGAGG
TCACGCGACCGGGAGCGGGGGGGGTGTCCGGAGGGTCATCAAGGGGGGTT
GGTGGATACCCCGATGACAACGGTCGTGGCGCCCGGGTGGAGGATGACCG
TTCCAGGACCTCGCGTGGCGGAGGTAGGACGATCGATCGCAACAACACCG
GGGGTAGCGGGGGTGGAGGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14429:3866..4688+

>mRNA_H-paniculata_contig14429.2659.1 ID=mRNA_H-paniculata_contig14429.2659.1|Name=mRNA_H-paniculata_contig14429.2659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig14429:3866..4688+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGGGACAGCCGAGAAAGGGGAAGCAGGGAAGGGGGCCGAGATAGTCG
GGAGGGGAGGGCGAACGACGCCGATTCTCGCGCCAAAGGCAGGGACAGCC
GAGAAAGGGGAAGCAGGGAAGGGGGCCGAGATAGTCGGGAGGGGAGGGCG
AACGACGCCGATTCTCGCGCCAAAGCAATGGCCGCAAAAGATATGGAGCG
GGTAGGGACGCGCCATGATTCCAGCGGCGACGCGACGGCGGGCACAAGAG
GTACTGGAACGCTCGCCGTCCCTCATGCATCATCGCGTGACTCCAGGGAG
GTCATCACTACCCCCAGACGCAGTAGTCGCGACGAGGTCACGCGACCGGG
AGCGGGGGGGGTGTCCGGAGGGTCATCAAGGGGGGTTGGTGGATACCCCG
ATGACAACGGTCGTGGCGCCCGGGTGGAGGATGACCGTTCCAGGACCTCG
CGTGGCGGAGGTAGGACGATCGATCGCAACAACACCGGGGGTAGCGGGGG
TGGAGGGGGCGCAATGGCCGCAAAAGATATGGAGCGGGTAGGGACGCGCC
ATGATTCCAGCGGCGACGCGACGGCGGGCACAAGAGGTACTGGAACGCTC
GCCGTCCCTCATGCATCATCGCGTGACTCCAGGGAGGTCATCACTACCCC
CAGACGCAGTAGTCGCGACGAGGTCACGCGACCGGGAGCGGGGGGGGTGT
CCGGAGGGTCATCAAGGGGGGTTGGTGGATACCCCGATGACAACGGTCGT
GGCGCCCGGGTGGAGGATGACCGTTCCAGGACCTCGCGTGGCGGAGGTAG
GACGATCGATCGCAACAACACCGGGGGTAGCGGGGGTGGAGGGGGC
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