mRNA_H-paniculata_contig144.2646.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig144.2646.1
Unique NamemRNA_H-paniculata_contig144.2646.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig144.2646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig144contigH-paniculata_contig144:40807..47245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue6.5e-07
Seed eggNOG ortholog2880.D7FXL8
Hectar predicted targeting categoryother localisation
EggNOG OGs2ES5T@1,2SUTI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size628
Cds size627
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929145.7430763-CDS-H-paniculata_contig144:40806..409931622929145.7430763-CDS-H-paniculata_contig144:40806..40993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig144 40807..40993 -
1691480748.9054341-CDS-H-paniculata_contig144:40806..409931691480748.9054341-CDS-H-paniculata_contig144:40806..40993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig144 40807..40993 -
1622929146.052074-CDS-H-paniculata_contig144:46805..472451622929146.052074-CDS-H-paniculata_contig144:46805..47245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig144 46806..47245 -
1691480748.915249-CDS-H-paniculata_contig144:46805..472451691480748.915249-CDS-H-paniculata_contig144:46805..47245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig144 46806..47245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig144.2646.1prot_H-paniculata_contig144.2646.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig144 40807..47245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig144.2646.1

>prot_H-paniculata_contig144.2646.1 ID=prot_H-paniculata_contig144.2646.1|Name=mRNA_H-paniculata_contig144.2646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
MRLQDSGRPLPTHMSCAEPNTTNEKIARILHAKTYMRVWGLAAVIALPSI
SCLRHTATLANSGKSSSWHPSRARPCETFQRAVKLQHYRLAEQVLGRRRA
HRGARNSLSRLAAMTHVEEKKQAQLPAWHQMPKIRHTVDELERELIRSPF
TDETWRRSAQLLKAIVVNLDSCLNLDSPYMSLEHCAALSLVARLGERCRR
SGRTGSGDG
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mRNA from alignment at H-paniculata_contig144:40807..47245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig144.2646.1 ID=mRNA_H-paniculata_contig144.2646.1|Name=mRNA_H-paniculata_contig144.2646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6439bp|location=Sequence derived from alignment at H-paniculata_contig144:40807..47245- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTTGCAGGACAGCGGTAGACCACTGCCGACCCACATGTCGTGTGC
GGAGCCAAACACAACAAATGAGAAAATCGCTCGTATTCTCCACGCCAAAA
CTTACATGCGTGTATGGGGATTAGCAGCGGTGATTGCTTTGCCCAGCATT
TCCTGCCTTCGCCATACCGCAACCTTAGCCAACAGCGGGAAATCTAGCAG
TTGGCATCCGTCTAGGGCGAGGCCATGCGAAACGTTCCAGAGGGCAGTCA
AATTGCAACACTATCGCCTTGCAGAACAGGTCCTCGGTAGGAGAAGGGCA
CATCGGGGAGCGAGAAATTCTCTCAGCCGCTTGGCCGCCATGACCCATGT
CGAGGAGAAGAAACAGGCACAACTGCCTGCATGGCATCAGATGCCCAAGA
TACGACATACCGTGGACGAGCTGGAACGAGAGCTCATAAGGTATTGAACC
CCTCTACTGCGTGTATGAATCGTCCGAGCATCGCGCATGTAAGTGGTTAG
GGAAGGGTCGATGGCGTTCTTGGCTTGAGAAGCTGTCACGCGGTTGTTGT
ACGCGCAGCGATGCACGTCAGTAGTGCAAACAGCACAGTTGTAATGTATC
AGCACGTCGTAATAATTTACATGAACATCAGGTTTCAGCTGTGTGACCAC
ACACAAGTACATGATATGCCCATGAAGCTAGCCAAGCAGCCCGAGTGGTT
TGATGGGCAGGAGTAACAACAGAGTATACAACATCAGCAAATTACCCTGG
TTCACTGTCTCTCTTCCCGCCCTCCCGGTCTAACGCTCTGTTGATGGACG
TGCAAGTACCCTGTCATATACACAGCACCACTTACTGTTCATAATCAGAG
TCATCCTAGTCTAGGGGGGGGGGTCAATTGTTTAACGAAGCCCGCTTCGC
AAAAAAGTGGCACACATGACGCGAATCAAAACCATGTCAATTGCATGTTT
TTGTGCATCCCTAAGTGAACAGTCCACGAGTTGAAATAGGATTTCTGTTC
AAATGCGGGCAATTGAAAGCAATAAATGCATACAAACGCTCGATCCCGTT
CTCAAAGCAGCTCAAACCCGCCCCGCTTATGCAGGATGATATGGATATAT
TCAATTTTGTGATATATTATGCACTCCCGCCCCCTCACATTTTTGAGAGG
GGGGTAGGGAAATCCGCTGGAGCATCAACCATTCGAATGGAATACTCCAC
CCGCATCCGACCGTCGGCCACCACCTGGAGATGAGCTGCACGAGTTCGCC
CAGCCTCACACTTCAAATAAAGCTACATGGAATCACTGAGCCTCCTCCCC
CCCACGGCCAGCATGTGCGCCTACTAGTGTAGTGCACCCACGCTGTATCC
CGAAATACTGCCCCTCAACCAGTATGCTATCATCCACATAATGTCAACGA
AAAACGGATCACCGATGTTGCCGCCGCTCCCTCGGATTGGTTTACAGTCA
GCGAGTACGGTGGCAACGGCGCCGCCACGAGGAGGTGCCATTGAATCGAG
GTCGCCGTACTGCGACCAATCTTGGACGTGACAGCGTCGAAAAAGGAGGT
TTTGGTATACGAATGTTTCAACGCTGTTGCCAACAGACCCCAGAATCCTG
GGCTACTGCGCCACCCGAACTCCAAACAGAGGTTAGGAACAGCCAAATCA
CCCATCAAATATCCAAACGACGCGGCACTTGCCGGGTCTACAAGAACTTG
ACGGAAGGCCTCTTCAACGTCATTTTTACTGAGCACGATACGGACGACGA
ACCGAATTATTGTCGCAAATACAGCACACGAAGGAGTACCTTGTGTTGTG
TTGCAGTACTCCACTACCGTCGCACGAAGGAGTGTGCAAGAAATCGGTGT
CTTCGTTAACGCTCGTATGGAACGGTCCGCGGGGAGAAAATGTAAGGTCA
TGAATAATACAAATTTTGGATTCAACACTACGCAGAATGGAGAGACGCGA
AAATCGGTGATTTCGTTAACATCTTTTGGGTCGAACACCAGGGAGCGACC
GTTCAACACATCCTGGCGTAATTGGTCATAAACACGGTCACAGTATTCCT
CAACGCCACTGTGGTTTCCGTAGCGCAGCTCACTGATCAAACCGCCGCCA
GTCTGCACGTTTATCGGCGCACCGCGCTCAAGAACGTGCGCTAATCAATC
AATTTGAGGAAACGCTTTGACGTCGCCGAACCAATTGCGAACGCTAGCGA
CGTTAACCGAACGTACCAGGAGTAAATTGGGCCATGGAACCGGGCACCAG
CAATTCGCGATCCCCCCAGACCTCGAAATTTCCCAGGACCTCGCAAGCAA
GCGCGTGCAAACCTTCGTCCGCCGCTCGACCACGCGCACTTTCTGATGAT
TCCCGTGTTGGGCCCCGCCAAACGGCGAAGCCCGCCCCCCTATCCGGAGC
GCCCCCAGCCTTCGGAAAGCCCGGACGCATGATCTCCATTGCGCACCCGC
GGGACACCAGCCCGTGAGGGGTCAGAGATGCTGCCACTATGCCACGCGGA
AGGCGACCCGGTTGCGCCAGCCCCTACCCCCCTTCCACCCCCCGCACTAC
CCCCGCTGTCAATACCGGCACCGGCCGCTCCGCCGCCGCCGCCGCCGTCG
TCGGTATTGTGGGAAAGCTGGCACAGGTCTCCTCTGTTGCAATAGATGTC
CTGGAAACGGTAGCATGGCCTGTCCGACCGGGGTATTTAGGGGGCGGCTT
GAAATTAAGTGCTGAGTAAACGTAATAGCGACCGCAAGATGGCTATGGAT
AATTACTGTAACTACTATATATATATCGTGGCCACCAGGCCCGCCCTCGG
TCCTTATCGCTTGTGTCTAAAAGGGTCGAGATGAGTTCAAGCTCGAGAAT
TTCAAGTTTTGTTGTGAACAGCAAGAAATGTGAAATTTACAATTGCGGAC
ATCATTGTCACAGCGATGACGTACCTCTTATTGTACCATATATCATACTG
CAACCAACCTGCTTGTACAGGTGACGCAACAACAGAAATGCAGCAGCAGA
TACTCGAGGTTACAGCAAACTAACCCAAACAATTAAGTGCTGAGTAAAGG
CAATAGCGACCGCAAGATGGCTATGGATGATTACTGTAACTACTATATAT
ACATCGTGGCCACCAGGCCTGCCCTCGGTCCTCATCGCTTGTCTGTAAAA
GGGTCGAGGTGAAATCAAGCTCGATATTTTCAGGTTTTGTTGCGACCAGC
GAGAAATGAAATGAAGGCGGCTAGAATATCCCCTAAAAATCCCTTAAATC
CTCCCACCACGTCTTTAGCTCCTCGCACAACCTTCGCCCTGTCACGCCTT
TCGCTCGCGTGCGTGGCTCAGCTTGGCTTCTCTCCCCTGTTTCGAATCCC
TATGCCCCTTCTTGCTAGCAGCCTTCAGCACACATACTCTCTCGCCTTTA
ACTTTCTCTTTACTTGCACGATAGTCACAACTAAATTGCTGGGCTTTACT
GCGTTATCTGTTCAGCTGTATCAATCTTGGAACCACACTCCACACGTATA
ACAGACATTGTAACATGGAATATTCTTCCACATGTATAAACAGAAGATTT
TGTCTTGGACTCAGTCTTTCAATTTGTGCATCGCTTGAGGTGCACAGTTC
ACGAGTTGAAATGGGATTTCTGTTTAAGGGAGGACAACAAATGTAATATA
TATTCACTCCCTCTGTCCCATATGTCTGTCCGGTTTGGCGCCATGAGCCA
TAACTTTCTACCCCTTGGGTTATACACCACAAAATATATATCATTCGAAA
GCCCTTGATTTCCGCTATCTCCTGTATGTTTTCAAAATACAATTCCGATT
TGTTAACATTCCGAAAGTCCAAGGTGAAAAAAAAAAGTTATTTTTTGTCA
GAAATTTGTAAGAAACCCGGGACTTCTTTTTTCGATGTATTTTTTCAGTT
GCAGCCCCCCTACACCACACACAGCACCATGGCAAGCCCTCCCAGCCCAC
CGCTGAGCCCTGCCAGTCCAACGGTGAACCTTAGGGGGGCGACCCCTAGT
ACTCCAAGCCCATCATTACACTATGGAAGCCCATCCCGTCTTATCAACCA
CGGAGAGCTCTCTCCAGGATCTCGTTAGGATTGGCATTACGGTGTGCAAG
GGCGTTGCCACCCAGGCAGACCAAGATGCCCCATGGCACATACAAAGCGC
TCGCGGATAAGTACGAGGACTGGCAGGGCTCAGCGGTGGGCTGGGAGGGC
TTGCCATGGTGCTGTGTGTGGTGTAGGGGGGCTGCAACTGAAAAAATACA
TCGAAAAAAGAAGTCCCGGGTTTTTTACAAATTTTTGACAAAAAATAACT
TTTTTTTTCACCTTGGACTTTCGGAATGTTAACAAATCGGAATTGTATTT
TGAAACATACAGGAGATAGCGGAAATCAAGGGCTTTCGAATGATATATAT
TTTGTGGTGTATAACCCAAGGGGTAGAAAGTTATGGCTCATGGCGCCAAA
CCGGACAGACATATGGGACAGAGGGAGTATACACATACATACAAATTCCC
GAGCCCCTTCTCAAAGCAGCTCCTTCGTTAAACAAAGCGGCTCAAATACC
CCCCACTACTGTAGGATGACTCGTTAGCTCTTTGCAAACAAGTTCTTCGA
AGTATATGGTTTGGATACTGTGGTAACAAGTGATTCGTGGATGCAGCGAC
TACAGAGCAGTAAGGCCAATTTACCAATCCAAGGTTCAGCGGAGTAACTC
AACGCACCAAAGAGAGACCTTGTTTTCGTTGGGTTGTTTTTGCTCCCCAT
TATACTCTGAGCGCTTTGATTTGATGTTAGACGCTGGGGCTATTTCAAGA
GTTAAACAACACCACTGCTTCATTATAGCGCGCAGCTGTCACGAGGGTCA
GACTAGAAAGCGAATTCTCGAGGTCCCTTATATCAGTTCTTGTCTCCACG
TGAGACGCTTGCGTGCCAGGGGTCTATGGTAGCAGGAGCCCAGACTAGGT
TGCTATGCGCACACAAACACACGGAAGGCGAATCAGATTCTGCTCTCATC
CCTCGTCTTTTCTTTCTTAATCACTTTGTACTCGTTCTTTGTGAGGTTTC
TGCCCTCACTCTCTCACACAGACTGATCTTTCCTATAGTGAACACTACTA
TCAGATGCTCTCAACCAGAAGTCTGCGGAAGGGATGTCGACTGTCATATC
AAGGTAGGGTCGAGCAGAGCTCTCCTAAAACCGAACTATGGTAAACGGCT
CTTTCCCAGCAGTAGCTACAAGGCATCCTCAGAGTATTCCCCCTTATTAT
TCAAGGCCAGGCTAGGTTGTGACTGACTCACGTCGGTTCCATCTACCATA
ACAGGGCCGCTCCGCAGGTACACAATCTCATACCTGCACCATTTCTGGAG
CGTATCTATGTACAACCATAGAGCTATACCCACCGTAAGTGGGATAAATA
TGTACACCCATCCAACCGTTTAGGGTTTTCCCCTCAAAACATGCATGCAT
GCCTCCAAGCCATACAAAACAGCCCTATTGAGTCAAATGTAGTACACCAC
ATTGTTTCATCGCCCGGTCGAGCGGACTCCGTCAAGCATGCGTCATAAAC
AACCTGGGGATGCCTATCTTTTGGTCTGAACTGCAACGACCATCCGGAAA
ACCAGAAAAAGGTTGGTAGCCTGTGCAGCATGAAGACACAACTGCCCCAT
GCCTGACGCTGCAAGAATCCGGGACGGACAGGGTGGCAGTTTTACCCCAT
CTCGTACGTGATGCCTCCTCAGTCAGTCAAGGTTTTTCCGCTGTAAAATT
GAGCAGTATTTGTGCTTGAGCATTACTCCTTGCACCACGAACGAGAGTCC
ATGTCAACCTTGTGTTTCGAAGTCTCCAGAGGGACGCTACAGTATGCTTC
GGAACTGAGATAATTGTAGAAGGACTAATATCTAAATATCATGTTGAGGC
ATTCTCTGCGTTGCACAGGAAATGTGGGAACCGCAATACGCTGACTGTGC
GATGGATGGATGGATGCACCCTTCAAGGCAATGTCCGAACACTGTTAATA
ATACTTTCAGTAACTCACTCAACACAGGCGAAAAACGAGGCAAAATGTGA
AGCGGAGCCTTCTACTTACTGTTGGGATCGCTGCAAACTTCTTAAACAAT
GCTACTTGAGGTCAGAAACCTCCTTCACCCACTCTCACCTACCTCTACAC
AAGGACCTTTTTCCAGTCTCCTTGGCCCTCGCCAATTTGCCACTTTCTGT
TTGCCATTCGCTCCTCCTTTTTATTCTGGTGTAAATTTCTAAATATTTAC
AGGTCGCCGTTCACGGATGAGACGTGGCGACGCTCGGCGCAACTCCTCAA
GGCCATCGTTGTGAACCTCGACAGTTGCCTCAACCTCGACAGCCCGTACA
TGTCGCTGGAGCATTGCGCAGCTCTATCTCTCGTTGCGCGGCTCGGCGAG
CGATGTCGACGGTCAGGTCGTACGGGAAGCGGGGATGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig144:40807..47245-

>mRNA_H-paniculata_contig144.2646.1 ID=mRNA_H-paniculata_contig144.2646.1|Name=mRNA_H-paniculata_contig144.2646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at H-paniculata_contig144:40807..47245- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTTGCAGGACAGCGGTAGACCACTGCCGACCCACATGTCGTGTGC
GGAGCCAAACACAACAAATGAGAAAATCGCTCGTATTCTCCACGCCAAAA
CTTACATGCGTGTATGGGGATTAGCAGCGGTGATTGCTTTGCCCAGCATT
TCCTGCCTTCGCCATACCGCAACCTTAGCCAACAGCGGGAAATCTAGCAG
TTGGCATCCGTCTAGGGCGAGGCCATGCGAAACGTTCCAGAGGGCAGTCA
AATTGCAACACTATCGCCTTGCAGAACAGGTCCTCGGTAGGAGAAGGGCA
CATCGGGGAGCGAGAAATTCTCTCAGCCGCTTGGCCGCCATGACCCATGT
CGAGGAGAAGAAACAGGCACAACTGCCTGCATGGCATCAGATGCCCAAGA
TACGACATACCGTGGACGAGCTGGAACGAGAGCTCATAAGATGCGGTTGC
AGGACAGCGGTAGACCACTGCCGACCCACATGTCGTGTGCGGAGCCAAAC
ACAACAAATGAGAAAATCGCTCGTATTCTCCACGCCAAAACTTACATGCG
TGTATGGGGATTAGCAGCGGTGATTGCTTTGCCCAGCATTTCCTGCCTTC
GCCATACCGCAACCTTAGCCAACAGCGGGAAATCTAGCAGTTGGCATCCG
TCTAGGGCGAGGCCATGCGAAACGTTCCAGAGGGCAGTCAAATTGCAACA
CTATCGCCTTGCAGAACAGGTCCTCGGTAGGAGAAGGGCACATCGGGGAG
CGAGAAATTCTCTCAGCCGCTTGGCCGCCATGACCCATGTCGAGGAGAAG
AAACAGGCACAACTGCCTGCATGGCATCAGATGCCCAAGATACGACATAC
CGTGGACGAGCTGGAACGAGAGCTCATAAGGTCGCCGTTCACGGATGAGA
CGTGGCGACGCTCGGCGCAACTCCTCAAGGCCATCGTTGTGAACCTCGAC
AGTTGCCTCAACCTCGACAGCCCGTACATGTCGCTGGAGCATTGCGCAGC
TCTATCTCTCGTTGCGCGGCTCGGCGAGCGATGTCGACGGTCAGGTCGTA
CGGGAAGCGGGGATGGGGTCGCCGTTCACGGATGAGACGTGGCGACGCTC
GGCGCAACTCCTCAAGGCCATCGTTGTGAACCTCGACAGTTGCCTCAACC
TCGACAGCCCGTACATGTCGCTGGAGCATTGCGCAGCTCTATCTCTCGTT
GCGCGGCTCGGCGAGCGATGTCGACGGTCAGGTCGTACGGGAAGCGGGGA
TGGG
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