mRNA_H-paniculata_contig14203.2558.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM) HSP 1 Score: 132 bits (333), Expect = 1.430e-33 Identity = 68/177 (38.42%), Postives = 114/177 (64.41%), Query Frame = 3 Query: 270 PIARMSTLRTVFSLAA*HDFELQDMDVESACLNAPVEEVLFVKLPSDSSHFS*DIP-FVRRLRKILYGFKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKV-DEFKHSVSQRFRMKYLGSLSRVLGIEVRCDRPNGTITISQGSYIREVL 794 P+A+ +++R V SLAA + +L MDV++A LN ++E +++ P + D P V +L++ LYG KQS R WN T+DDF++ +G + +D C+Y RD G+ + VA+YVDDLV+A +++ + KH++S+RF M LG L LG+E++ DR +G +T+ Q +++ +L Sbjct: 71 PVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPD--GYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSIL 243
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.850e-33 Identity = 89/232 (38.36%), Postives = 125/232 (53.88%), Query Frame = 3 Query: 120 EITGRAKGDSCEMDFQAETEGGR*RGTLQSATSGSRVFAGG-----G*RFL*NQCPIARMSTLRTVFSLAA*HDFELQDMDVESACLNAPVEEVLFVKLPSDSSHF-S*DIPFVRRLRKILYGFKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHSVSQRFRMKYLGSLSRVLGIEVRCDRPNGTITISQGSYIREVL 794 E+T KG+ C ET+ G + + R A G G +L P+A ++T+R V +LA D EL +MDVE A L + +EE ++VK P + S V RLRK LYG KQSGRNW+ +D + G G S+ D CLY GE L++ +YVDDL+I RE V +FKH++S+ F MK L L +LG+ ++ DR + ISQ +YI +L Sbjct: 7 ELTPLPKGERCISSGWVETDKRDQNGVIVRRKA--RFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMML 235
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM) HSP 1 Score: 130 bits (327), Expect = 1.330e-32 Identity = 67/177 (37.85%), Postives = 113/177 (63.84%), Query Frame = 3 Query: 270 PIARMSTLRTVFSLAA*HDFELQDMDVESACLNAPVEEVLFVKLPSDSSHFS*DIP-FVRRLRKILYGFKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKV-DEFKHSVSQRFRMKYLGSLSRVLGIEVRCDRPNGTITISQGSYIREVL 794 P+A+ +++R V SLAA + +L MDV++A LN ++E +++ P + D P V +L++ LYG KQS R WN T+DDF++ +G + +D C+Y RD G+ + VA+YVDDLV+A +++ + KH++S+RF M LG L LG+E++ D +G +T+ Q +++ +L Sbjct: 110 PVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPD--GYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSIL 282
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM) HSP 1 Score: 134 bits (337), Expect = 2.200e-32 Identity = 69/177 (38.98%), Postives = 114/177 (64.41%), Query Frame = 3 Query: 270 PIARMSTLRTVFSLAA*HDFELQDMDVESACLNAPVEEVLFVKLPSDSSHFS*DIP-FVRRLRKILYGFKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKV-DEFKHSVSQRFRMKYLGSLSRVLGIEVRCDRPNGTITISQGSYIREVL 794 P+A+ +++R V SLAA + +L MDV++A LN ++E +++ P + D P V +L++ LYG KQS R WN T+DDF++ +G + +D C+Y RD G+ + VA+YVDDLV+A +++ D KH++S+RF M LG L LG+E++ DR +G +T+ Q +++ +L Sbjct: 369 PVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPD--GYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSIL 541
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 128 bits (322), Expect = 7.830e-32 Identity = 83/231 (35.93%), Postives = 125/231 (54.11%), Query Frame = 3 Query: 123 ITGRAKGDSCEMDFQAETEGGR*RGTLQSATSGSRVFAGG-----G*RFL*NQCPIARMSTLRTVFSLAA*HDFELQDMDVESACLNAPVEEVLFVKLPSDSSHFS*D-IPFVRRLRKILYGFKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHSVSQRFRMKYLGSLSRVLGIEVRCDRPNGTITISQGSYIREVL 794 +T KG+ C ET+ G + + R A G G +L P+A ++T+R + ++A D EL +MDV++A L + +EE ++VK P + V RLRK LYG KQSGRNW+ +D + G G S+ D CLY GE L++ +YVDDL+IAG R+ VD+FK ++S+ MK L L +LG+ ++ +R + ISQ +YI +L Sbjct: 8 LTPLPKGERCISSGWVETDKRDQNGIIVRRKA--RFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMML 235
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.090e-31 Identity = 75/183 (40.98%), Postives = 110/183 (60.11%), Query Frame = 3 Query: 252 FL*NQCPIARMSTLRTVFSLAA*HDFELQDMDVESACLNAPVEEVLFVKLPSDSSHF-S*DIPFVRRLRKILYGFKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHSVSQRFRMKYLGSLSRVLGIEVRCDRPNGTITISQGSYIREVL 794 +L P+A ++T+R + ++A D EL +MDVE+A L + +EE ++VK P + S V RLRK LYG KQSGRNW+ +D + G G S+ D CLY GE L++ +YVDDL+I RE V++FKH++S+ F MK L L +LG+ ++ DR + ISQ +YI +L Sbjct: 494 YLYTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMML 675
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.190e-31 Identity = 87/232 (37.50%), Postives = 125/232 (53.88%), Query Frame = 3 Query: 120 EITGRAKGDSCEMDFQAETEGGR*RGTLQSATSGSRVFAGG-----G*RFL*NQCPIARMSTLRTVFSLAA*HDFELQDMDVESACLNAPVEEVLFVKLPSDSSHFS*DI-PFVRRLRKILYGFKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHSVSQRFRMKYLGSLSRVLGIEVRCDRPNGTITISQGSYIREVL 794 E+T KG+ C ET+ +G + + R A G G +L P+A M+T+R V +LA D EL +MDV++A L + +EE +++K P + + V RLRK LYG KQSGRNW+ +D + G GL S D CLY GE L++ +YVDDL+I R D+FK +S+ F MK L L +LG+ ++ +R N T+ ISQ YI +L Sbjct: 227 ELTPLPKGERCISSGWVETDKRDQKGVIVRRKA--RFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMML 455
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Match: H3H9D6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9D6_PHYRM) HSP 1 Score: 132 bits (332), Expect = 2.620e-31 Identity = 68/177 (38.42%), Postives = 114/177 (64.41%), Query Frame = 3 Query: 270 PIARMSTLRTVFSLAA*HDFELQDMDVESACLNAPVEEVLFVKLPSDSSHFS*DIP-FVRRLRKILYGFKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDEGGETNLLVAVYVDDLVIAGRREKV-DEFKHSVSQRFRMKYLGSLSRVLGIEVRCDRPNGTITISQGSYIREVL 794 P+A+ +++R V SLAA + +L MDV++A LN ++E +++ P + D P V +L++ LYG KQS R WN T+DDF++ +G + +D C+Y RD G+ + VA+YVDDLV+A +++ + KH++S+RF M LG L LG+E++ DR +G +T+ Q +++ +L Sbjct: 489 PVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPD--GYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLQSIL 661
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA) HSP 1 Score: 127 bits (319), Expect = 2.710e-31 Identity = 71/179 (39.66%), Postives = 115/179 (64.25%), Query Frame = 3 Query: 270 PIARMSTLRTVFSLAA*HDFELQDMDVESACLNAPVEEVLFVKLP---SDSSHFS*DIPFVRRLRKILYGFKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHSVSQRFRMKYLGSLSRVLGIEVRCDRPNGTITISQGSYIREVL 794 P+A+ +++R + SLAA H+ ELQ MDV +A LN+ ++E +++++P +D + P V +L+K LYG KQ+ R WN T+D F++ IG +S D C+Y R + E +LV++YVDDL++A E + K ++S+RF+M LG LS LGIE+ P+G++ I Q +++ VL Sbjct: 131 PVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKP-VLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCLGIEI-VRSPSGSVFIHQSKFLKSVL 305
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR) HSP 1 Score: 132 bits (332), Expect = 3.000e-31 Identity = 79/178 (44.38%), Postives = 107/178 (60.11%), Query Frame = 3 Query: 270 PIARMSTLRTVFSLAA*HDFELQDMDVESACLNAPVEEVLFVKLPSDSSHFS*DIP--FVRRLRKILYGFKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHSVSQRFRMKYLGSLSRVLGIEVRCDRPNGTITISQGSYIREVL 794 P+A + ++R + +LAA HD EL MDV++A LN + E L++ LP D DIP +L+K LYG KQ+GR WN T D L +G R ++CLY R EGG+ LV VYVDDL++A R +DE K ++ F+M+ LG S VLGI++R DR I +SQ YI VL Sbjct: 1089 PVANLESIRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYL-LPPDGV----DIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVL 1260 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14203.2558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14203.2558.1 >prot_H-paniculata_contig14203.2558.1 ID=prot_H-paniculata_contig14203.2558.1|Name=mRNA_H-paniculata_contig14203.2558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp MEKWRAAMEEEWGTLVKNGTWESEDLGRLPAGRKGIRAKWIFKRKLKEDGback to top mRNA from alignment at H-paniculata_contig14203:5966..6759- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14203.2558.1 ID=mRNA_H-paniculata_contig14203.2558.1|Name=mRNA_H-paniculata_contig14203.2558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=794bp|location=Sequence derived from alignment at H-paniculata_contig14203:5966..6759- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14203:5966..6759- >mRNA_H-paniculata_contig14203.2558.1 ID=mRNA_H-paniculata_contig14203.2558.1|Name=mRNA_H-paniculata_contig14203.2558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig14203:5966..6759- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |