mRNA_H-paniculata_contig14181.2539.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14181.2539.1
Unique NamemRNA_H-paniculata_contig14181.2539.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14181.2539.1 vs. uniprot
Match: D8LRE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRE0_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 1.060e-75
Identity = 127/173 (73.41%), Postives = 142/173 (82.08%), Query Frame = 1 
Query:    1 MSEEAKTGEVMVQMHSSMANKHADTMPAVSKFDQSADPIPKVVPPRGSKDARSFRPSTLAEINLMKQYKPLTMTCGSKTIGIGCGNSLEDLLLIMGCVLALWSFVLGLSALLLKSAIDTDRNHTALWAYFWLFVLSVLLLGGMIATGQVERARAEAIQAKKQAEEDEAQAMAA 519
            MSEEAKT EV V M    A+ HADT   VSKFDQS +PIPKVVPPRGSKDARSFRPSTLAEIN+M +Y+PL + CG KT GIGCGNSLED+LLIMGC+LALWSFVLG+S LLLKSAIDTD  HTALW YFWLF+L   LLGGMIATGQVER R+E   A+KQ ++D A AM+A
Sbjct:    1 MSEEAKTNEVAVSMPK--ADIHADTQQEVSKFDQSKNPIPKVVPPRGSKDARSFRPSTLAEINMMNRYEPLELKCGGKTFGIGCGNSLEDVLLIMGCILALWSFVLGVSGLLLKSAIDTDLRHTALWVYFWLFILGCFLLGGMIATGQVERFRSERAAAEKQHDDDAAAAMSA 171
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BLAST of mRNA_H-paniculata_contig14181.2539.1 vs. uniprot
Match: A0A6U1XJS9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1XJS9_TRICV)

HSP 1 Score: 88.6 bits (218), Expect = 3.780e-17
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:  142 SKDARSFRPSTLAEINLMKQYKPLTMTCGSKTIG------IGCGNSLEDLLLIMGCVLALWSFVLGLSALLLKSAIDTDRNHTALWAYFWLFVLSVLLLGGMIATGQ 444
            ++D+RSFRPS+LA    M  Y+PL ++  +K  G      IGCG+S EDL LI  C  AL+SF++G+ AL+L+ A+DTD  HT LWA+  + VL V  + G +  G+
Sbjct:   22 TQDSRSFRPSSLAGTKGMNSYRPLVISY-TKADGSPGHCAIGCGHSAEDLALIFACYAALYSFLIGMFALMLRGALDTDDTHTLLWAFLVIGVLFVSFVSGAVYVGR 127
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BLAST of mRNA_H-paniculata_contig14181.2539.1 vs. uniprot
Match: A0A6V1NIL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NIL0_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 1.570e-14
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = 1 
Query:  199 QYKPLT--------MTCGSKT-------IGIGCGNSLEDLLLIMGCVLALWSFVLGLSALLLKSAIDTDRNHTALWAYFWLFVLSVLLLGGMIATGQVERARAEAIQAKKQAEEDE 501
            QYKPL         M C +K        I IGCGN+ EDL++I   +  LW  +LG   LLLK+ ID+  + T LW YF+  ++ V+++GG + TGQ+ERAR+E    KK AEE E
Sbjct:   64 QYKPLIIEVKNNPCMCCPAKCGCTKECIIPIGCGNTFEDLVIIFSLLGTLWCGLLGFYTLLLKAQIDSTEHSTVLWIYFFSGIIFVIMVGGSVYTGQIERARSE----KKAAEEAE 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14181.2539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRE0_ECTSI1.060e-7573.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U1XJS9_TRICV3.780e-1744.86Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6V1NIL0_HETAK1.570e-1443.10Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14181contigH-paniculata_contig14181:3293..5187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002890.1
Exons2
Model size1469
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14181.2539.1prot_H-paniculata_contig14181.2539.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14181 4666..5187 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.6170218-UTR-H-paniculata_contig14181:3292..42061622929127.6170218-UTR-H-paniculata_contig14181:3292..4206Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14181 3293..4206 -
1691480741.5495517-UTR-H-paniculata_contig14181:3292..42061691480741.5495517-UTR-H-paniculata_contig14181:3292..4206Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14181 3293..4206 -
1622929127.6429431-UTR-H-paniculata_contig14181:4632..46651622929127.6429431-UTR-H-paniculata_contig14181:4632..4665Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14181 4633..4665 -
1691480741.5601375-UTR-H-paniculata_contig14181:4632..46651691480741.5601375-UTR-H-paniculata_contig14181:4632..4665Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14181 4633..4665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.6630266-CDS-H-paniculata_contig14181:4665..51871622929127.6630266-CDS-H-paniculata_contig14181:4665..5187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14181 4666..5187 -
1691480741.5724435-CDS-H-paniculata_contig14181:4665..51871691480741.5724435-CDS-H-paniculata_contig14181:4665..5187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14181 4666..5187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14181.2539.1

>prot_H-paniculata_contig14181.2539.1 ID=prot_H-paniculata_contig14181.2539.1|Name=mRNA_H-paniculata_contig14181.2539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MSEEAKTGEVMVQMHSSMANKHADTMPAVSKFDQSADPIPKVVPPRGSKD
ARSFRPSTLAEINLMKQYKPLTMTCGSKTIGIGCGNSLEDLLLIMGCVLA
LWSFVLGLSALLLKSAIDTDRNHTALWAYFWLFVLSVLLLGGMIATGQVE
RARAEAIQAKKQAEEDEAQAMAA*
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mRNA from alignment at H-paniculata_contig14181:3293..5187-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14181.2539.1 ID=mRNA_H-paniculata_contig14181.2539.1|Name=mRNA_H-paniculata_contig14181.2539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1895bp|location=Sequence derived from alignment at H-paniculata_contig14181:3293..5187- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGAAGAAGCGAAGACGGGTGAAGTGATGGTGCAAATGCACTCGAG
TATGGCAAACAAGCACGCCGACACTATGCCCGCCGTCTCCAAGTTCGACC
AGAGCGCAGACCCCATCCCCAAGGTAGTACCACCGCGAGGTTCAAAGGAT
GCGCGCTCATTCAGGCCTTCCACCCTTGCGGAGATCAACCTGATGAAGCA
ATACAAGCCCCTGACTATGACCTGCGGGAGCAAGACCATCGGCATCGGCT
GCGGCAACAGCTTGGAAGACCTCCTGCTCATCATGGGCTGCGTACTCGCC
CTCTGGTCGTTCGTGCTCGGTCTGTCTGCACTCCTGCTCAAGTCGGCGAT
TGACACTGACAGGAACCACACAGCCCTATGGGCATACTTTTGGTTGTTCG
TCCTCTCTGTACTGCTGCTGGGTGGAATGATCGCTACCGGGCAGGTAGAG
CGCGCGCGCGCCGAGGCGATCCAGGCGAAGAAGCAGGCTGAGGAAGACGA
GGCTCAAGCCATGGCTGCATAAGACTTCTTCGCATTTTGCGACAGCAATG
AATAGGTGAACTCTTCGTTTATTTGTCTTGCCTGTCACTTCGCGTTCCTC
ATAATCATGCAGCAGAAAAAAATCGTTCGTGATGCCCCACCGAATATACG
AAAAACACGTTGCAACGTCAACTTTATGAACTGCTGCACTACAGAGAGTA
CATAGAAGTAGTAAGAGTCAGTTCAGTCACATACATTTTAAATAGTCTGT
ATGCAGACTGTTATGAGCAGTTATTTAGAAGCGCTAGTCAGTTTGGGCCA
CTACTCCCTGTTGCAGTGACAATAGACACTGGCTGTTGTGGCATTAACTT
TCTATTTCATATTCATGTTGCATGTGTACTTTGGCCAACATACAAGAGAT
TCACTCATCGATCGTCTTGTGTGCTGAATCACTAATCAATGGCATGTTGG
CCCGTTTATGTTCACGTGCAAACTGATTCAGCATGGCTCTCAATGTAATG
ATGTTACTGGTAACATCGGCATGGGGGTGGTCTAGCGGCTATAGGGAATA
GGTGCAGCAGAGATGGCAGACAGCGCAATGGAAGGAAGGGCTCGAATCAT
GAACAATTGAATGCATTCGGGGGGGGGGTGGTGGGGAAACGATGGTCTTT
GCTGATATGGTGAAAGCTGTGCGTTGGAATGGACTCGGAGCAGTGCCGTT
GCGGCAGAGCAGCAAAAATTTGCGTGGATTTACTGTGGCAAGATGGAGGT
TGGTCGCCACCGCCTCTCTGCTGTGCTGTTTTATCTCGGATATGCTGAGT
TTTCTTTGCCAGGTTTCGTGCGTTATTTAAAATTACAAGGACGGACTGTT
TGGGGGGGGGGGTGCACCCCGGTGGGGAGAGGGCTGGGCGTTCATGGTCA
CACTAGAAACGGGAGGGTCAGGTTTGGAATGCATTAATTTATTTTGATGC
TAGTCTCAGCAGTAGAATCTCAAGGAATTATTGTGGACCATGCCATCGTT
TTGAATCATCCGTCAGGCTTGTTTCAGTGTTCCGGCTGTTTTGTTTTGTG
TTGTAGGCTTCTGTGACCTCCAAGTAATTACATGTGGCCAACTGGCCGGT
ACAGGTTTGCAGTCCCGAATATAGTAGCCCCCCCGGTCTGTTCGTTCGTT
TCGCTTCCGATTCCCGTTCGGACGTTGCTTCTTCGGGGTTTGTCAAAGGC
CTCGCGGCTTCTTTTCATGTAACTAGCTTCACTCCGCGTGCGCTTCGCCT
TTTGTTCAGTTAAATTTGTTCCTTTGTAGCTCACCTTGATGCTGCGCAAT
ATCCCGCAAAAATGCTGCTGTACCATCAGCTCATGTTGCGGTCGATGTTT
CGCTGGTGGAGAGGAAAAAAGAGGAGGGAGGGGACCGGCCGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14181:3293..5187-

>mRNA_H-paniculata_contig14181.2539.1 ID=mRNA_H-paniculata_contig14181.2539.1|Name=mRNA_H-paniculata_contig14181.2539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig14181:3293..5187- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGAAGAAGCGAAGACGGGTGAAGTGATGGTGCAAATGCACTCGAG
TATGGCAAACAAGCACGCCGACACTATGCCCGCCGTCTCCAAGTTCGACC
AGAGCGCAGACCCCATCCCCAAGGTAGTACCACCGCGAGGTTCAAAGGAT
GCGCGCTCATTCAGGCCTTCCACCCTTGCGGAGATCAACCTGATGAAGCA
ATACAAGCCCCTGACTATGACCTGCGGGAGCAAGACCATCGGCATCGGCT
GCGGCAACAGCTTGGAAGACCTCCTGCTCATCATGGGCTGCGTACTCGCC
CTCTGGTCGTTCGTGCTCGGTCTGTCTGCACTCCTGCTCAAGTCGGCGAT
TGACACTGACAGGAACCACACAGCCCTATGGGCATACTTTTGGTTGTTCG
TCCTCTCTGTACTGCTGCTGGGTGGAATGATCGCTACCGGGCAGGTAGAG
CGCGCGCGCGCCGAGGCGATCCAGGCGAAGAAGCAGGCTGAGGAAGACGA
GGCTCAAGCCATGGCTGCATAAATGTCTGAAGAAGCGAAGACGGGTGAAG
TGATGGTGCAAATGCACTCGAGTATGGCAAACAAGCACGCCGACACTATG
CCCGCCGTCTCCAAGTTCGACCAGAGCGCAGACCCCATCCCCAAGGTAGT
ACCACCGCGAGGTTCAAAGGATGCGCGCTCATTCAGGCCTTCCACCCTTG
CGGAGATCAACCTGATGAAGCAATACAAGCCCCTGACTATGACCTGCGGG
AGCAAGACCATCGGCATCGGCTGCGGCAACAGCTTGGAAGACCTCCTGCT
CATCATGGGCTGCGTACTCGCCCTCTGGTCGTTCGTGCTCGGTCTGTCTG
CACTCCTGCTCAAGTCGGCGATTGACACTGACAGGAACCACACAGCCCTA
TGGGCATACTTTTGGTTGTTCGTCCTCTCTGTACTGCTGCTGGGTGGAAT
GATCGCTACCGGGCAGGTAGAGCGCGCGCGCGCCGAGGCGATCCAGGCGA
AGAAGCAGGCTGAGGAAGACGAGGCTCAAGCCATGGCTGCATAA
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