mRNA_H-paniculata_contig1414.2524.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1414.2524.1
Unique NamemRNA_H-paniculata_contig1414.2524.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A6H5JMH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH8_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 2.660e-128
Identity = 228/386 (59.07%), Postives = 279/386 (72.28%), Query Frame = 3
Query:  414 RGVRRRPRVVAAEDSNPLGWAMSQLG---ATRGNGDGTPRSVSTAGLEGWRDWKNLDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHS----AVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMG--EASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDEANGLMMAMA 1544
            RG  RRPRV ++       +A ++        G G     S STA      DW++L  E+E  LCE I+E+RR+Q+LQVELE    RPVTVQEWA+AAGHP+AHQL AALQEGRKA+RTL  CHQGLVRSVA RY  +S++LS +DL QEG++GLLQAV +FDPTKG RFSSYAVFRIKAS+LRAIA+KDRL+RVPVHAQDAAMR+LAA HALQ +SG     PTDAQLA+AL MPE +VALYR+ L L +++A LD+ A+S S    A G   RGG +G EQWPW      EA +LA+  +VR DM+R M+ CL+P E +ALRLRFG+G  E  G       ALTFKEIG  ME+S EGIR+MV R++ KL+ASDEANGL++A A
Sbjct:   66 RGGIRRPRVPSSPAQEKALFATARRRNAFVVEGGGANPVTSSSTA------DWRDLTKEEETALCELIVENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESG--GDVPTDAQLAVALGMPEASVALYRKSL-LPQNIADLDNSALSGSPQGRAAGGGSRGGRVGGEQWPW------EASQLAQAYVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAAGGGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYA 436          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: D7FPW8_ECTSI (RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW8_ECTSI)

HSP 1 Score: 383 bits (983), Expect = 2.420e-124
Identity = 216/359 (60.17%), Postives = 264/359 (73.54%), Query Frame = 3
Query:  498 RGNGDGTPRSVSTAGLEGWRDWKNLDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHS--------AVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMG--EASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDEANGLMMAMA 1544
            RG G     S ST       DW++L  E+E  LCE I+E+RR+Q+LQVELE    RPVTVQEWA+AAGHP+AHQL AALQEGRKA+RTL  CHQGLVRSVA RY  +S++LS +DL QEG++GLL+AV +FD TKG RFSSYAVFRIKAS+LRAIA+KDRL+RVPVHAQDAAMR+LAA HALQ +SG     PTDAQLA+AL MPE +VALYR+ L L +++A LD+PA+  S        A G    GG +G EQWPW      EA +LA+  +VR DM+R M+ CL+P E +ALRLRFG+G  E  G       ALTFKEIG  ME+S EGIR+MV R++ KL+ASDEANGL+++ A
Sbjct:   35 RGGGANPVTSSSTT------DWRDLTKEEETALCELIIENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLEAVEKFDSTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESG--GDVPTDAQLAVALGMPEASVALYRKSL-LPQNIADLDNPALPSSPQGRGGSGAAGGGSLGGRVGGEQWPW------EASQLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAVADGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLSYA 378          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A835ZDU2_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU2_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.730e-58
Identity = 134/316 (42.41%), Postives = 188/316 (59.49%), Query Frame = 3
Query:  570 LDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGM-GEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASD 1514
            LD + E  L   I EH R+   Q +LE   GR   V EWA AAG+  +  + AAL+EG+KA+  LV   + +VR++A +YA ++KSL+ +DL+QEG++GLL A  +FDP KG RF +YA FR+KAS+LRAIANKDR IR+PVH QD A ++ +A   LQ   G     PTDA++A  L M    V  +R           +D  A++ +AV +D       +   P  R         +EM    ED+ RV+   L P+E++AL+LRFG+ G+A+G        LTFKE+GG M+ S EGIRR+V RA++KL   +
Sbjct:   47 LDPDVENALYAAIREHSRIHAKQEQLECILGRSALVAEWASAAGYMDSMSMLAALREGQKAQTKLVKSQRAMVRAIAKKYAFITKSLTLDDLIQEGNLGLLSAADKFDPDKGARFGTYAAFRVKASVLRAIANKDRQIRIPVHIQDVAGKVRSATQRLQVTLG---RPPTDAEIAATLDMLPSEVTAHRE---------MMDKEAVTVNAV-SDRDVMAFAARATPQAR---------SEMV---EDLKRVLELYLAPKEIEALQLRFGLDGQAAG-------PLTFKEVGGSMQTSAEGIRRIVSRALDKLREGE 330          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A1J0A9P1_9CYAN (RNA polymerase sigma factor SigD n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A1J0A9P1_9CYAN)

HSP 1 Score: 125 bits (314), Expect = 4.840e-28
Identity = 97/314 (30.89%), Postives = 160/314 (50.96%), Query Frame = 3
Query:  570 LDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHSAVGT--DIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLE 1505
            L  E+E  L  Q+    ++Q  +++ E   G+P++  EWA  AG   A +L    + G  A+R ++  +  LV SVA +Y  + +++   DL+QEG++G+ + V +FDP+KG RFS+YA + I+ +I RAIA K R IR+P+H  +   +    +  L  + G  A+ P   +LA+AL +  + V  Y         + ++ HP      VG   D   G L  +Q P       +   +A++  V  D        LTP++ Q +RLR+G+          EA LT   IG +M IS E +R++   A+ +L+
Sbjct:   27 LSHEEEVALGRQVQTLAQLQAQRIQREQELGQPISQAEWAQVAGCSLA-ELERHCKAGEHAKRKMIEANLRLVVSVAKKY--VKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKMNKFKRVQRELAQELGRAASIP---ELAVALELTPNQVREY---------LERMRHPLSLDVKVGDNLDTELGDLLEDQGPSPEEYAAQNSLMADINSVLND--------LTPQQRQVIRLRYGLEG--------EAPLTLSRIGELMNISRERVRQIEREALTRLK 309          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A3M2AWN1_9BACT (RNA polymerase sigma factor n=4 Tax=Terrabacteria group TaxID=1783272 RepID=A0A3M2AWN1_9BACT)

HSP 1 Score: 127 bits (318), Expect = 7.460e-28
Identity = 102/350 (29.14%), Postives = 170/350 (48.57%), Query Frame = 3
Query:  501 GNGDGTPRSVSTAGLEGW----RDWKNLDVEDEKDLCEQILEHRRVQNLQVELEVSA---GRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRG----LPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDE 1517
            G G+ TP    +  +E W    R  + L  E+E    +Q+ E  R+  ++ ++          V+  +WA AA  P   +L A +QE  +A+R L+  +  LV S+A RYAS  + +S  DL+QEG++GL++AV +FDP +G RFS+YA + I+ +I RA+ N  R IR+PV+  +   +++  E  LQ    +    PTD ++A    M  + V   RR     + ++  V + D+  +       DI                    P      L+  + + ++ E L P E   +RLRFG+ +   G Q      T +E+G  ++I+ E +R++  RA+ KL    E
Sbjct:   70 GVGEETPHEEDSVEIELWMLQSRRSQLLTPEEEIRFAQQVQEGERLYKIRKQIAEKRKMDAESVSEDDWAKAANLPN-WELAARIQEAEEAKRRLIESNLRLVVSIAKRYAS--RGISLADLIQEGNLGLIRAVEKFDPDRGFRFSTYATWWIRRAIARAVINNSRTIRIPVYVAELINKVIKTELRLQQ---ILQREPTDEEIAAETKMSVERVREIRRAAVEPISIESPVGERDNATLGEFIPSQDIV-----------------PTPEDVTARLILREQIDMILEKLQPRERDVVRLRFGLDD---GHQR-----TLEEVGAELKITRERVRQLELRALRKLRLIGE 388          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: UPI0019DF3EF8 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019DF3EF8)

HSP 1 Score: 124 bits (310), Expect = 1.520e-27
Identity = 96/287 (33.45%), Postives = 149/287 (51.92%), Query Frame = 3
Query:  645 LEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPR-LAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKL 1502
            LE   GR  T  EWA A+G  T   L AA++EG +A+R +V  +  LV SVA +Y  + +++   DL+QEG++G+ + V +FDPTKG RFS+YA + I+ +I RAIA K R IR+P+H  +   ++  A+  L    G    T T ++LA  L +    V  Y     L++          S   +  D+R G     +        G +P   A    +R D+ ++M + LTP++ Q L LRFG+ +           +T  +IG M+ IS E +R++   A+ KL
Sbjct:   48 LEEKLGRSPTQAEWAEASGLST-QALAAAIREGEQAKRKMVEANLRLVVSVAKKY--IKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKRAQRQLSQKHG---RTATVSELAAELELSPKLVREY-----LEK----------SRQPLSLDLRVGDNQDTELSDLLEDDGPSPEEFATQAALRRDLDKLMVD-LTPQQRQVLNLRFGLDDGQ--------TMTLAKIGEMLSISRERVRQIEREALTKL 304          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: UPI0008F9CA57 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI0008F9CA57)

HSP 1 Score: 124 bits (310), Expect = 1.560e-27
Identity = 101/329 (30.70%), Postives = 164/329 (49.85%), Query Frame = 3
Query:  570 LDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALY----RRGLPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPR-LAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDEANGLMMAM 1541
            L  E+E    +Q+ +  ++Q ++ EL  S GR  T+ EWA AA   +  QL   L  G  A+R +V  +  LV SVA +Y  + +++   DL+QEG++G+ + V +FDPTKG RFS+YA + I+ +I RAIA K R IR+P+H  +   ++  A+  L  + G  AT    A+LA  L +    +  Y    R+ L L++ V       +      T                   G +P   A  + ++ D+  +M++ LTP++ + L LRFG+ +          ALT  +IG  + IS E +R++   A+ KL       G  +A+
Sbjct:   24 LTHEEEIYYGKQVQKFNQLQEVKKELTESQGREPTMSEWA-AAADLSVEQLQKQLARGEHAKRKMVEANLRLVVSVAKKY--IKRNVDLMDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRNLSQNLGRAATV---AELAEELDLSPKQIREYLERARQPLSLEQRVGDNQDTELGDLLEDT-------------------GPSPEDFATQSSLKADLTELMQD-LTPQQKEVLALRFGLEDGK--------ALTLSKIGDRLNISRERVRQIEREALTKLRKRKAQMGEYLAI 318          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A7S1TGP2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGP2_9RHOD)

HSP 1 Score: 125 bits (314), Expect = 2.070e-27
Identity = 105/327 (32.11%), Postives = 160/327 (48.93%), Query Frame = 3
Query:  561 WKNLDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPA--ISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPRL-AEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDEANGLM 1532
            +K L  E E +L + I    + +          GR  +  EWAM    P        +Q GR+A+  +V  +  LV S+A +Y  L++ LS +DL+QEGS+GL++   +FD  KG +FS+YA + I+ +I RAIA++ R IR+PVH  D    +  A   LQ + G     P D ++A  L MP D V    R     R    L+ P    S + +G  I        +W       GE P       L+RED+  V+R  L+P E + +R+R+G  +   GR       T +EIG +  ++ E IR++  +A+ KL      NGL+
Sbjct:  101 YKLLSSESEVELAKDIKMLLKYERRYTNFREGIGRIPSELEWAMECAVPL-RDFRIRIQRGRRAKERMVAANLRLVVSIAKKY--LNRGLSFQDLIQEGSIGLIRGTEKFDAEKGYKFSTYATWWIRQAITRAIADQSRPIRLPVHVNDTLSAIKKATKVLQHELG---RAPDDEEIAERLKMPVDKVRFVARSA---RSTVSLETPIGKESENTLGCFI--------EWE------GETPEEEVSKNLLREDLESVLRT-LSPREREVIRMRYGFDD---GRMK-----TLEEIGHLFSVTRERIRQIEAKALRKLRHPTR-NGLL 394          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A831XPK3_9BACT (RNA polymerase sigma factor n=2 Tax=Bacteria TaxID=2 RepID=A0A831XPK3_9BACT)

HSP 1 Score: 125 bits (315), Expect = 2.600e-27
Identity = 107/365 (29.32%), Postives = 181/365 (49.59%), Query Frame = 3
Query:  516 TPRSVSTAGLEGW----RDWKNLDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQE-----WAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRG----LPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAM-------EKLEASDEANGLMMAMALA 1550
            TP    +  +E W    R  + L  E+E    +Q+ E  R+  ++ +L  +  R V+V+E     WA A G P  ++L   L+E  +A+R L+  +  LV SVA RYA+  + +S  DL+QEG++GL++AV +FDP++G RFS+YA + I+ +I RA+ N  R IR+PV+  +   +++  E  LQ    +    PTD ++A    M  + V   RR     + ++  V + D+  +      TDI                    P      ++  + + ++ + L P E   +RLRFG+ +   G Q      T +E+G  ++I+ E +R++  RA+       E+LE   +  GL +  ALA
Sbjct:   96 TPHEDDSVDVELWMLQSRRSQLLTPEEEIRYAQQVQEGERLHKVRQQL--AEKRKVSVEEISEAEWAEAVGLPP-YELAYRLEEAEEAKRRLIESNLRLVVSVAKRYAT--RGISLADLIQEGNLGLIRAVEKFDPSRGFRFSTYATWWIRRAIARAVINNGRTIRIPVYVAELINKVIKTEMRLQQ---ILQREPTDEEIAQETGMSVERVREIRRASIEPISIESPVGERDNATLGEFIPSTDIV-----------------PTPEDVTRQMILREQIEMILQKLQPRERDVVRLRFGLDD---GHQR-----TLEEVGAELKITRERVRQLELRALRKLRLIGERLEDLRKTRGLELEEALA 427          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: UPI0019EADD56 (RNA polymerase sigma factor RpoD n=1 Tax=Geminocystis sp. M7585_C2015_104 TaxID=2774334 RepID=UPI0019EADD56)

HSP 1 Score: 124 bits (311), Expect = 4.080e-27
Identity = 98/313 (31.31%), Postives = 162/313 (51.76%), Query Frame = 3
Query:  570 LDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISH--SAVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKL 1502
            L  E+E +L  QI +   ++ ++ +L+   GR  T +EWA A   P+  Q +  L  GR+A+  +V  +  LV S+A +Y  +++ LS +DL+QEGS+GL++A  +FD  KG +FS+YA + I+ +I RAIA++ R IR+PVH  +   R+      L    G     PT+ ++A  + M  + +    +   L      L+ P      S +G  I   G   E              +A+  L+RED+  V+ + L+P E   LRLR+G+ +   GR       T +EIG +  ++ E IR++  +A+ KL
Sbjct:   90 LRAEEEIELARQISDLLEMEYIRNKLKEHLGRKPTDEEWAQACNMPSLRQFYRRLHLGRRAKDKMVQSNLRLVVSIAKKY--MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMG---RKPTEEEIAEDMEMTIEKLRFIAKSAQLP---ISLETPIGKEEDSRLGDFIEADGENPED------------EVAK-NLLREDLENVL-DSLSPRERDVLRLRYGLDD---GRMK-----TLEEIGQIFNVTRERIRQIEAKALRKL 372          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMH8_9PHAE2.660e-12859.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPW8_ECTSI2.420e-12460.17RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A835ZDU2_9STRA1.730e-5842.41RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A1J0A9P1_9CYAN4.840e-2830.89RNA polymerase sigma factor SigD n=3 Tax=Cyanobact... [more]
A0A3M2AWN1_9BACT7.460e-2829.14RNA polymerase sigma factor n=4 Tax=Terrabacteria ... [more]
UPI0019DF3EF81.520e-2733.45RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI0008F9CA571.560e-2730.70RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A7S1TGP2_9RHOD2.070e-2732.11Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A831XPK3_9BACT2.600e-2729.32RNA polymerase sigma factor n=2 Tax=Bacteria TaxID... [more]
UPI0019EADD564.080e-2731.31RNA polymerase sigma factor RpoD n=1 Tax=Geminocys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1414contigH-paniculata_contig1414:18051..21111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.0
Seed ortholog evalue3e-105
Seed eggNOG ortholog2880.D7FPW8
KEGG koko:K03086
Hectar predicted targeting categoryother localisation
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
Ec32 ortholog descriptionRNA polymerase sigma-70 region 2
Ec32 orthologEc-01_008400.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons3
Model size2013
Cds size1389
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1414.2524.1prot_H-paniculata_contig1414.2524.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1414 18227..20663 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.4179244-UTR-H-paniculata_contig1414:18050..182261622929125.4179244-UTR-H-paniculata_contig1414:18050..18226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1414 18051..18226 +
1691480740.7616901-UTR-H-paniculata_contig1414:18050..182261691480740.7616901-UTR-H-paniculata_contig1414:18050..18226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1414 18051..18226 +
1622929125.4896073-UTR-H-paniculata_contig1414:20663..211111622929125.4896073-UTR-H-paniculata_contig1414:20663..21111Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1414 20664..21111 +
1691480740.8018558-UTR-H-paniculata_contig1414:20663..211111691480740.8018558-UTR-H-paniculata_contig1414:20663..21111Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1414 20664..21111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.43917-CDS-H-paniculata_contig1414:18226..186311622929125.43917-CDS-H-paniculata_contig1414:18226..18631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1414 18227..18631 +
1691480740.771438-CDS-H-paniculata_contig1414:18226..186311691480740.771438-CDS-H-paniculata_contig1414:18226..18631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1414 18227..18631 +
1622929125.4609213-CDS-H-paniculata_contig1414:19002..192261622929125.4609213-CDS-H-paniculata_contig1414:19002..19226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1414 19003..19226 +
1691480740.7789085-CDS-H-paniculata_contig1414:19002..192261691480740.7789085-CDS-H-paniculata_contig1414:19002..19226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1414 19003..19226 +
1622929125.476783-CDS-H-paniculata_contig1414:19903..206631622929125.476783-CDS-H-paniculata_contig1414:19903..20663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1414 19904..20663 +
1691480740.7864847-CDS-H-paniculata_contig1414:19903..206631691480740.7864847-CDS-H-paniculata_contig1414:19903..20663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1414 19904..20663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1414.2524.1

>prot_H-paniculata_contig1414.2524.1 ID=prot_H-paniculata_contig1414.2524.1|Name=mRNA_H-paniculata_contig1414.2524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=463bp
MDPTVAALRRGWGENRQLRRPRIVGTRLRSQCRCCCVAVAGALLSFISGD
TKTVSGFSVGGLSAGPRARVHGDFKWSSSRGVRRRPRVVAAEDSNPLGWA
MSQLGATRGNGDGTPRSVSTAGLEGWRDWKNLDVEDEKDLCEQILEHRRV
QNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCH
QGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYA
VFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTP
TDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHSAVGTDIRGGG
LGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFG
MGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDEANG
LMMAMALAWSVG*
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mRNA from alignment at H-paniculata_contig1414:18051..21111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1414.2524.1 ID=mRNA_H-paniculata_contig1414.2524.1|Name=mRNA_H-paniculata_contig1414.2524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3061bp|location=Sequence derived from alignment at H-paniculata_contig1414:18051..21111+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAACGATGTAAAAAACAAATATCTGACACAGTTTCGACCAAAGTCAACAC TGACTGAGTGTCACTCAAACGATCACGTCTGCCCACGTACTTGGACCACG TTCCCACCAGGGAACTAACCCACACGCCACCGGCGTTACAACCAAACGCA AACTAAAAATACTCTTGAAAGATCAAATGGATCCTACTGTTGCAGCATTG AGGAGAGGCTGGGGCGAAAATCGCCAGCTGCGAAGACCAAGGATCGTTGG GACTCGATTACGATCTCAATGTCGCTGCTGTTGCGTTGCTGTGGCGGGCG CGTTGCTCTCATTCATCAGTGGCGATACAAAGACTGTGTCCGGCTTCTCC GTTGGCGGCCTGTCAGCAGGTCCTCGAGCCCGTGTTCATGGTGATTTTAA GTGGAGCAGCAGTCGTGGAGTACGACGGAGACCTCGAGTCGTGGCTGCTG AGGATTCGAACCCGCTTGGATGGGCCATGTCTCAGCTTGGTGCAACGAGG GGCAACGGTGACGGCACACCGAGGAGCGTATCGACTGCTGGACTTGAGGG CTGGAGAGACTGGAAAAATCTGGATGTAGAGGTCAGTAGAGTTGGTATTA TGTCTGTTTTTGTAGAGGTAGTGAGTAGTAGTCTACTGCCCCAAGGTACT GTATGTGGATGCATCGAGACAGGGTGTCACTTGACGTCCACTTGCGAGTA TCCGGTTGATTATCCTCTGTGTCAACTCTACACTCTGGGCTCTTGAGCTC AAAGTATTACATGAAATTTCTGATCTCTCCTATTTTGTTCTCCAAATCTA GCAAACGATAAACTGTTGTACACCCCTCATGGTGTTTTGAATTTGTTCAT TATCAGCGACCCCCGCCTCGCGCCGTGACAACACAATCGCACACTGGTAA TGAAATCCAACCAATACAACCTCGATTCTCTCTATTCACGCCTGCTACAC AGGACGAGAAGGACTTGTGCGAGCAAATCTTGGAGCATCGACGAGTGCAA AATCTGCAGGTGGAGTTGGAAGTCAGTGCTGGCCGGCCTGTAACCGTCCA GGAGTGGGCGATGGCGGCGGGACACCCGACAGCCCATCAGCTCTTCGCTG CGTTGCAGGAGGGACGGAAAGCGGAGCGCACGCTGGTGTTTTGCCATCAA GGACTTGTCCGAAGTGTTGCCAACAGGTGGGTATTTGTGAAGTGAGCGAC TACACTGACTTGAGGCAGCCGTGCTTTGTCATGTGTACGTACACGAGCAA GATTCTATTGGTCGTGGCAGCAAACGATCAAATTTGGTTCGAGGGAACCT TGTTCCGTTCAAGGTAAATTCGTTTTTTAAATCATGTATTGTATTGACGC CGTGGAGTCGGGCTTCGGTAAGAGGCGAACCACGAATAATACTGTAACGC GAGAGTGATGTATATATGGTGCAGTTGCGAGAATATTCCTCGCGCTTTTC AGCGGGTCTAGGGTTGCTTGTATCTCAAGCAATTGTTGCTCTCATCTCAA GTCAATGGGTTTCGATACGATGAACATGTGTTGGCTGGGGTTAATCGGCT CTTGTCGCTGACTGTACGCGTTTCCATATAGTCGCAATTCACACTCGGGA AGCAATACTTTTCGTTCTGACTACATAAGCATGATAAAGACACGGTATCC TCAGTACCTGAAGACAAACGGACGCCGATAGGCTGGAAGAAATGCCTACG GGATAGTATGCCTACGTTTGTGTGATTGGTACTCTCGCCTTCGCATTCTC CTGCCATCACGCGTTGCTCTTCATTCTGCTCGCTTTCAATGCACCCCCTC ACTAAATCCACGTCGTGGATGGGTATTTTTTTCGCCATATCGTAACCGTT CAGGTATGCATCTTTGTCCAAGAGCCTCAGCTGCGAAGACCTGGTGCAAG AGGGTAGCATGGGTCTCCTACAAGCAGTGTCGCGCTTCGACCCTACCAAG GGCTGCCGCTTCAGCTCCTACGCCGTGTTCCGAATAAAGGCCTCCATCCT CCGCGCGATCGCCAATAAGGATCGATTAATACGCGTCCCGGTACACGCCC AGGACGCTGCGATGCGCCTGCTGGCCGCCGAGCACGCCTTGCAGAGCGAC TCGGGGTTGGGGGCGACCACGCCGACCGACGCCCAGCTCGCTCTCGCGCT GACGATGCCTGAGGACACCGTAGCCCTCTATCGCCGCGGTTTGCCGTTGC AACGACACGTGGCCAAGTTGGATCACCCCGCAATCTCGCATAGCGCCGTA GGCACGGATATCCGCGGGGGCGGACTAGGGAGCGAACAGTGGCCGTGGAC TCGGGTGGGGGGCGGCGAAGCGCCGCGATTAGCAGAGATGACGTTGGTGA GGGAGGACATGCTTAGGGTGATGCGGGAGTGCTTGACCCCCGAGGAATTG CAGGCGTTGAGACTGCGGTTTGGGATGGGGGAGGCAAGTGGGGGTAGGCA GGCGGTGGAGGCGGCGCTCACGTTTAAAGAAATTGGGGGGATGATGGAGA TTAGCGGCGAGGGGATCCGGAGGATGGTTCACAGGGCGATGGAGAAGCTT GAAGCTTCTGATGAGGCGAATGGGCTCATGATGGCGATGGCGTTAGCGTG GAGCGTCGGATAGAACCCTCTCTTCCTTTTTTCCCTGTCACGATGGTTAT CAGTGATTGTTGTCTTCTTTTCGTGCTTTCTTGTTCGCTTGGGTTGAGTG CTCCATTGCCCAAACTGTGCAGTATGCCGGAAATCAGGCCCCTCCGTTTG TCGTTTCTTGTGCGTTCTCGATGTGTGTTGCGTTGTAGAATGTTCGTGTG CTTGATCAAGGTGGAATTTTCACCTCTTGCAGTGATGCGATGGTCTTTGG TAAACGAATTATCAGTGTGTAGTGGGCCTAGACTGATAGCCTCCGCCGCT CCTCGGTGAGGGTGTCGCTGCGAGTCATAACTGATGGCTCATTGTGTTTG GTTGTGTCGAAGGAATATTGGAAATTCACTTTCTATTGTACATATGTACG CCGTTGTAAACGTGTTACGGGAAATAAATGATGGTTTTTTCAACACAGAT ATGATACTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1414:18051..21111+

>mRNA_H-paniculata_contig1414.2524.1 ID=mRNA_H-paniculata_contig1414.2524.1|Name=mRNA_H-paniculata_contig1414.2524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2778bp|location=Sequence derived from alignment at H-paniculata_contig1414:18051..21111+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCTACTGTTGCAGCATTGAGGAGAGGCTGGGGCGAAAATCGCCA
GCTGCGAAGACCAAGGATCGTTGGGACTCGATTACGATCTCAATGTCGCT
GCTGTTGCGTTGCTGTGGCGGGCGCGTTGCTCTCATTCATCAGTGGCGAT
ACAAAGACTGTGTCCGGCTTCTCCGTTGGCGGCCTGTCAGCAGGTCCTCG
AGCCCGTGTTCATGGTGATTTTAAGTGGAGCAGCAGTCGTGGAGTACGAC
GGAGACCTCGAGTCGTGGCTGCTGAGGATTCGAACCCGCTTGGATGGGCC
ATGTCTCAGCTTGGTGCAACGAGGGGCAACGGTGACGGCACACCGAGGAG
CGTATCGACTGCTGGACTTGAGGGCTGGAGAGACTGGAAAAATCTGGATG
TAGAGATGGATCCTACTGTTGCAGCATTGAGGAGAGGCTGGGGCGAAAAT
CGCCAGCTGCGAAGACCAAGGATCGTTGGGACTCGATTACGATCTCAATG
TCGCTGCTGTTGCGTTGCTGTGGCGGGCGCGTTGCTCTCATTCATCAGTG
GCGATACAAAGACTGTGTCCGGCTTCTCCGTTGGCGGCCTGTCAGCAGGT
CCTCGAGCCCGTGTTCATGGTGATTTTAAGTGGAGCAGCAGTCGTGGAGT
ACGACGGAGACCTCGAGTCGTGGCTGCTGAGGATTCGAACCCGCTTGGAT
GGGCCATGTCTCAGCTTGGTGCAACGAGGGGCAACGGTGACGGCACACCG
AGGAGCGTATCGACTGCTGGACTTGAGGGCTGGAGAGACTGGAAAAATCT
GGATGTAGAGGACGAGAAGGACTTGTGCGAGCAAATCTTGGAGCATCGAC
GAGTGCAAAATCTGCAGGTGGAGTTGGAAGTCAGTGCTGGCCGGCCTGTA
ACCGTCCAGGAGTGGGCGATGGCGGCGGGACACCCGACAGCCCATCAGCT
CTTCGCTGCGTTGCAGGAGGGACGGAAAGCGGAGCGCACGCTGGTGTTTT
GCCATCAAGGACTTGTCCGAAGTGTTGCCAACAGGACGAGAAGGACTTGT
GCGAGCAAATCTTGGAGCATCGACGAGTGCAAAATCTGCAGGTGGAGTTG
GAAGTCAGTGCTGGCCGGCCTGTAACCGTCCAGGAGTGGGCGATGGCGGC
GGGACACCCGACAGCCCATCAGCTCTTCGCTGCGTTGCAGGAGGGACGGA
AAGCGGAGCGCACGCTGGTGTTTTGCCATCAAGGACTTGTCCGAAGTGTT
GCCAACAGGTATGCATCTTTGTCCAAGAGCCTCAGCTGCGAAGACCTGGT
GCAAGAGGGTAGCATGGGTCTCCTACAAGCAGTGTCGCGCTTCGACCCTA
CCAAGGGCTGCCGCTTCAGCTCCTACGCCGTGTTCCGAATAAAGGCCTCC
ATCCTCCGCGCGATCGCCAATAAGGATCGATTAATACGCGTCCCGGTACA
CGCCCAGGACGCTGCGATGCGCCTGCTGGCCGCCGAGCACGCCTTGCAGA
GCGACTCGGGGTTGGGGGCGACCACGCCGACCGACGCCCAGCTCGCTCTC
GCGCTGACGATGCCTGAGGACACCGTAGCCCTCTATCGCCGCGGTTTGCC
GTTGCAACGACACGTGGCCAAGTTGGATCACCCCGCAATCTCGCATAGCG
CCGTAGGCACGGATATCCGCGGGGGCGGACTAGGGAGCGAACAGTGGCCG
TGGACTCGGGTGGGGGGCGGCGAAGCGCCGCGATTAGCAGAGATGACGTT
GGTGAGGGAGGACATGCTTAGGGTGATGCGGGAGTGCTTGACCCCCGAGG
AATTGCAGGCGTTGAGACTGCGGTTTGGGATGGGGGAGGCAAGTGGGGGT
AGGCAGGCGGTGGAGGCGGCGCTCACGTTTAAAGAAATTGGGGGGATGAT
GGAGATTAGCGGCGAGGGGATCCGGAGGATGGTTCACAGGGCGATGGAGA
AGCTTGAAGCTTCTGATGAGGCGAATGGGCTCATGATGGCGATGGCGTTA
GCGTGGAGCGTCGGATAGGTATGCATCTTTGTCCAAGAGCCTCAGCTGCG
AAGACCTGGTGCAAGAGGGTAGCATGGGTCTCCTACAAGCAGTGTCGCGC
TTCGACCCTACCAAGGGCTGCCGCTTCAGCTCCTACGCCGTGTTCCGAAT
AAAGGCCTCCATCCTCCGCGCGATCGCCAATAAGGATCGATTAATACGCG
TCCCGGTACACGCCCAGGACGCTGCGATGCGCCTGCTGGCCGCCGAGCAC
GCCTTGCAGAGCGACTCGGGGTTGGGGGCGACCACGCCGACCGACGCCCA
GCTCGCTCTCGCGCTGACGATGCCTGAGGACACCGTAGCCCTCTATCGCC
GCGGTTTGCCGTTGCAACGACACGTGGCCAAGTTGGATCACCCCGCAATC
TCGCATAGCGCCGTAGGCACGGATATCCGCGGGGGCGGACTAGGGAGCGA
ACAGTGGCCGTGGACTCGGGTGGGGGGCGGCGAAGCGCCGCGATTAGCAG
AGATGACGTTGGTGAGGGAGGACATGCTTAGGGTGATGCGGGAGTGCTTG
ACCCCCGAGGAATTGCAGGCGTTGAGACTGCGGTTTGGGATGGGGGAGGC
AAGTGGGGGTAGGCAGGCGGTGGAGGCGGCGCTCACGTTTAAAGAAATTG
GGGGGATGATGGAGATTAGCGGCGAGGGGATCCGGAGGATGGTTCACAGG
GCGATGGAGAAGCTTGAAGCTTCTGATGAGGCGAATGGGCTCATGATGGC
GATGGCGTTAGCGTGGAGCGTCGGATAG
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