prot_H-paniculata_contig1414.2524.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1414.2524.1
Unique Nameprot_H-paniculata_contig1414.2524.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length463
Homology
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A6H5JMH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH8_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 3.340e-131
Identity = 228/386 (59.07%), Postives = 279/386 (72.28%), Query Frame = 0
Query:   80 RGVRRRPRVVAAEDSNPLGWAMSQLG---ATRGNGDGTPRSVSTAGLEGWRDWKNLDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHS----AVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMG--EASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDEANGLMMAMA 456
            RG  RRPRV ++       +A ++        G G     S STA      DW++L  E+E  LCE I+E+RR+Q+LQVELE    RPVTVQEWA+AAGHP+AHQL AALQEGRKA+RTL  CHQGLVRSVA RY  +S++LS +DL QEG++GLLQAV +FDPTKG RFSSYAVFRIKAS+LRAIA+KDRL+RVPVHAQDAAMR+LAA HALQ +SG     PTDAQLA+AL MPE +VALYR+ L L +++A LD+ A+S S    A G   RGG +G EQWPW      EA +LA+  +VR DM+R M+ CL+P E +ALRLRFG+G  E  G       ALTFKEIG  ME+S EGIR+MV R++ KL+ASDEANGL++A A
Sbjct:   66 RGGIRRPRVPSSPAQEKALFATARRRNAFVVEGGGANPVTSSSTA------DWRDLTKEEETALCELIVENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESG--GDVPTDAQLAVALGMPEASVALYRKSL-LPQNIADLDNSALSGSPQGRAAGGGSRGGRVGGEQWPW------EASQLAQAYVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAAGGGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYA 436          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: D7FPW8_ECTSI (RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW8_ECTSI)

HSP 1 Score: 383 bits (983), Expect = 3.300e-127
Identity = 216/359 (60.17%), Postives = 264/359 (73.54%), Query Frame = 0
Query:  108 RGNGDGTPRSVSTAGLEGWRDWKNLDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHS--------AVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMG--EASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDEANGLMMAMA 456
            RG G     S ST       DW++L  E+E  LCE I+E+RR+Q+LQVELE    RPVTVQEWA+AAGHP+AHQL AALQEGRKA+RTL  CHQGLVRSVA RY  +S++LS +DL QEG++GLL+AV +FD TKG RFSSYAVFRIKAS+LRAIA+KDRL+RVPVHAQDAAMR+LAA HALQ +SG     PTDAQLA+AL MPE +VALYR+ L L +++A LD+PA+  S        A G    GG +G EQWPW      EA +LA+  +VR DM+R M+ CL+P E +ALRLRFG+G  E  G       ALTFKEIG  ME+S EGIR+MV R++ KL+ASDEANGL+++ A
Sbjct:   35 RGGGANPVTSSSTT------DWRDLTKEEETALCELIIENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLEAVEKFDSTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESG--GDVPTDAQLAVALGMPEASVALYRKSL-LPQNIADLDNPALPSSPQGRGGSGAAGGGSLGGRVGGEQWPW------EASQLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAVADGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLSYA 378          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A835ZDU2_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU2_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.060e-60
Identity = 134/316 (42.41%), Postives = 188/316 (59.49%), Query Frame = 0
Query:  132 LDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGM-GEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASD 446
            LD + E  L   I EH R+   Q +LE   GR   V EWA AAG+  +  + AAL+EG+KA+  LV   + +VR++A +YA ++KSL+ +DL+QEG++GLL A  +FDP KG RF +YA FR+KAS+LRAIANKDR IR+PVH QD A ++ +A   LQ   G     PTDA++A  L M    V  +R           +D  A++ +AV +D       +   P  R         +EM    ED+ RV+   L P+E++AL+LRFG+ G+A+G        LTFKE+GG M+ S EGIRR+V RA++KL   +
Sbjct:   47 LDPDVENALYAAIREHSRIHAKQEQLECILGRSALVAEWASAAGYMDSMSMLAALREGQKAQTKLVKSQRAMVRAIAKKYAFITKSLTLDDLIQEGNLGLLSAADKFDPDKGARFGTYAAFRVKASVLRAIANKDRQIRIPVHIQDVAGKVRSATQRLQVTLG---RPPTDAEIAATLDMLPSEVTAHRE---------MMDKEAVTVNAV-SDRDVMAFAARATPQAR---------SEMV---EDLKRVLELYLAPKEIEALQLRFGLDGQAAG-------PLTFKEVGGSMQTSAEGIRRIVSRALDKLREGE 330          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A1J0A9P1_9CYAN (RNA polymerase sigma factor SigD n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A1J0A9P1_9CYAN)

HSP 1 Score: 125 bits (314), Expect = 8.380e-29
Identity = 97/314 (30.89%), Postives = 160/314 (50.96%), Query Frame = 0
Query:  132 LDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHSAVGT--DIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLE 443
            L  E+E  L  Q+    ++Q  +++ E   G+P++  EWA  AG   A +L    + G  A+R ++  +  LV SVA +Y  + +++   DL+QEG++G+ + V +FDP+KG RFS+YA + I+ +I RAIA K R IR+P+H  +   +    +  L  + G  A+ P   +LA+AL +  + V  Y         + ++ HP      VG   D   G L  +Q P       +   +A++  V  D        LTP++ Q +RLR+G+          EA LT   IG +M IS E +R++   A+ +L+
Sbjct:   27 LSHEEEVALGRQVQTLAQLQAQRIQREQELGQPISQAEWAQVAGCSLA-ELERHCKAGEHAKRKMIEANLRLVVSVAKKY--VKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKMNKFKRVQRELAQELGRAASIP---ELAVALELTPNQVREY---------LERMRHPLSLDVKVGDNLDTELGDLLEDQGPSPEEYAAQNSLMADINSVLND--------LTPQQRQVIRLRYGLEG--------EAPLTLSRIGELMNISRERVRQIEREALTRLK 309          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A3M2AWN1_9BACT (RNA polymerase sigma factor n=4 Tax=Terrabacteria group TaxID=1783272 RepID=A0A3M2AWN1_9BACT)

HSP 1 Score: 127 bits (318), Expect = 1.170e-28
Identity = 102/350 (29.14%), Postives = 170/350 (48.57%), Query Frame = 0
Query:  109 GNGDGTPRSVSTAGLEGW----RDWKNLDVEDEKDLCEQILEHRRVQNLQVELEVSA---GRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRG----LPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDE 447
            G G+ TP    +  +E W    R  + L  E+E    +Q+ E  R+  ++ ++          V+  +WA AA  P   +L A +QE  +A+R L+  +  LV S+A RYAS  + +S  DL+QEG++GL++AV +FDP +G RFS+YA + I+ +I RA+ N  R IR+PV+  +   +++  E  LQ    +    PTD ++A    M  + V   RR     + ++  V + D+  +       DI                    P      L+  + + ++ E L P E   +RLRFG+ +   G Q      T +E+G  ++I+ E +R++  RA+ KL    E
Sbjct:   70 GVGEETPHEEDSVEIELWMLQSRRSQLLTPEEEIRFAQQVQEGERLYKIRKQIAEKRKMDAESVSEDDWAKAANLPN-WELAARIQEAEEAKRRLIESNLRLVVSIAKRYAS--RGISLADLIQEGNLGLIRAVEKFDPDRGFRFSTYATWWIRRAIARAVINNSRTIRIPVYVAELINKVIKTELRLQQ---ILQREPTDEEIAAETKMSVERVREIRRAAVEPISIESPVGERDNATLGEFIPSQDIV-----------------PTPEDVTARLILREQIDMILEKLQPRERDVVRLRFGLDD---GHQR-----TLEEVGAELKITRERVRQLELRALRKLRLIGE 388          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: UPI0019DF3EF8 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019DF3EF8)

HSP 1 Score: 124 bits (310), Expect = 2.800e-28
Identity = 96/287 (33.45%), Postives = 149/287 (51.92%), Query Frame = 0
Query:  157 LEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPR-LAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKL 442
            LE   GR  T  EWA A+G  T   L AA++EG +A+R +V  +  LV SVA +Y  + +++   DL+QEG++G+ + V +FDPTKG RFS+YA + I+ +I RAIA K R IR+P+H  +   ++  A+  L    G    T T ++LA  L +    V  Y     L++          S   +  D+R G     +        G +P   A    +R D+ ++M + LTP++ Q L LRFG+ +           +T  +IG M+ IS E +R++   A+ KL
Sbjct:   48 LEEKLGRSPTQAEWAEASGLST-QALAAAIREGEQAKRKMVEANLRLVVSVAKKY--IKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKRAQRQLSQKHG---RTATVSELAAELELSPKLVREY-----LEK----------SRQPLSLDLRVGDNQDTELSDLLEDDGPSPEEFATQAALRRDLDKLMVD-LTPQQRQVLNLRFGLDDGQ--------TMTLAKIGEMLSISRERVRQIEREALTKL 304          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: UPI0008F9CA57 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI0008F9CA57)

HSP 1 Score: 124 bits (310), Expect = 2.860e-28
Identity = 101/329 (30.70%), Postives = 164/329 (49.85%), Query Frame = 0
Query:  132 LDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALY----RRGLPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPR-LAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDEANGLMMAM 455
            L  E+E    +Q+ +  ++Q ++ EL  S GR  T+ EWA AA   +  QL   L  G  A+R +V  +  LV SVA +Y  + +++   DL+QEG++G+ + V +FDPTKG RFS+YA + I+ +I RAIA K R IR+P+H  +   ++  A+  L  + G  AT    A+LA  L +    +  Y    R+ L L++ V       +      T                   G +P   A  + ++ D+  +M++ LTP++ + L LRFG+ +          ALT  +IG  + IS E +R++   A+ KL       G  +A+
Sbjct:   24 LTHEEEIYYGKQVQKFNQLQEVKKELTESQGREPTMSEWA-AAADLSVEQLQKQLARGEHAKRKMVEANLRLVVSVAKKY--IKRNVDLMDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRNLSQNLGRAATV---AELAEELDLSPKQIREYLERARQPLSLEQRVGDNQDTELGDLLEDT-------------------GPSPEDFATQSSLKADLTELMQD-LTPQQKEVLALRFGLEDGK--------ALTLSKIGDRLNISRERVRQIEREALTKLRKRKAQMGEYLAI 318          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A7S1TGP2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGP2_9RHOD)

HSP 1 Score: 125 bits (314), Expect = 3.470e-28
Identity = 105/327 (32.11%), Postives = 160/327 (48.93%), Query Frame = 0
Query:  129 WKNLDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPA--ISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPRL-AEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDEANGLM 452
            +K L  E E +L + I    + +          GR  +  EWAM    P        +Q GR+A+  +V  +  LV S+A +Y  L++ LS +DL+QEGS+GL++   +FD  KG +FS+YA + I+ +I RAIA++ R IR+PVH  D    +  A   LQ + G     P D ++A  L MP D V    R     R    L+ P    S + +G  I        +W       GE P       L+RED+  V+R  L+P E + +R+R+G  +   GR       T +EIG +  ++ E IR++  +A+ KL      NGL+
Sbjct:  101 YKLLSSESEVELAKDIKMLLKYERRYTNFREGIGRIPSELEWAMECAVPL-RDFRIRIQRGRRAKERMVAANLRLVVSIAKKY--LNRGLSFQDLIQEGSIGLIRGTEKFDAEKGYKFSTYATWWIRQAITRAIADQSRPIRLPVHVNDTLSAIKKATKVLQHELG---RAPDDEEIAERLKMPVDKVRFVARSA---RSTVSLETPIGKESENTLGCFI--------EWE------GETPEEEVSKNLLREDLESVLRT-LSPREREVIRMRYGFDD---GRMK-----TLEEIGHLFSVTRERIRQIEAKALRKLRHPTR-NGLL 394          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: A0A831XPK3_9BACT (RNA polymerase sigma factor n=2 Tax=Bacteria TaxID=2 RepID=A0A831XPK3_9BACT)

HSP 1 Score: 125 bits (314), Expect = 5.770e-28
Identity = 107/365 (29.32%), Postives = 181/365 (49.59%), Query Frame = 0
Query:  114 TPRSVSTAGLEGW----RDWKNLDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQE-----WAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLALALTMPEDTVALYRRG----LPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAM-------EKLEASDEANGLMMAMALA 458
            TP    +  +E W    R  + L  E+E    +Q+ E  R+  ++ +L  +  R V+V+E     WA A G P  ++L   L+E  +A+R L+  +  LV SVA RYA+  + +S  DL+QEG++GL++AV +FDP++G RFS+YA + I+ +I RA+ N  R IR+PV+  +   +++  E  LQ    +    PTD ++A    M  + V   RR     + ++  V + D+  +      TDI                    P      ++  + + ++ + L P E   +RLRFG+ +   G Q      T +E+G  ++I+ E +R++  RA+       E+LE   +  GL +  ALA
Sbjct:   96 TPHEDDSVDVELWMLQSRRSQLLTPEEEIRYAQQVQEGERLHKVRQQL--AEKRKVSVEEISEAEWAEAVGLPP-YELAYRLEEAEEAKRRLIESNLRLVVSVAKRYAT--RGISLADLIQEGNLGLIRAVEKFDPSRGFRFSTYATWWIRRAIARAVINNGRTIRIPVYVAELINKVIKTEMRLQQ---ILQREPTDEEIAQETGMSVERVREIRRASIEPISIESPVGERDNATLGEFIPSTDIV-----------------PTPEDVTRQMILREQIEMILQKLQPRERDVVRLRFGLDD---GHQR-----TLEEVGAELKITRERVRQLELRALRKLRLIGERLEDLRKTRGLELEEALA 427          
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Match: Q9AYR7_PHYPA (RNA polymerase sigma factor n=2 Tax=Physcomitrium patens TaxID=3218 RepID=Q9AYR7_PHYPA)

HSP 1 Score: 127 bits (318), Expect = 6.890e-28
Identity = 98/315 (31.11%), Postives = 164/315 (52.06%), Query Frame = 0
Query:  130 KNLDVEDEKDLCEQILEHRRVQNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCHQGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYAVFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTPTDAQLA-LALTMPEDTVALYRRGLPLQRHVAKLDHPAISHSAVGTDIRGGGLGSEQWPWTRVGGGEAPRLAEMT-LVREDMLRVMRECLTPEELQALRLRFGMGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKL 442
            K L   +E DL  QI +  +++N++  LE   GR  T+ EW+ A G    +   A L++GR A+  +V  +  LV S+A  Y    + ++ +DL+QEGSMGL++   +FDPTKG +FS+YA + I+ ++ R+IA++ R IR+P+H  +   R+  A+  L  + G  A     A+L  L +   +  V   +    ++R + K     +      TD+                  ++P  A +  L+R+D+  V+R  L P E + LRLRFG+ +   GR       T +EIG + +++ E IR++  +AM KL
Sbjct:  275 KLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQ-NAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQG--RGMTLQDLIQEGSMGLVRGAEKFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDV------------------DSPEDAIVKQLMRQDIEGVLRT-LNPREREVLRLRFGLDD---GRSK-----TLEEIGQIFKVTRERIRQIEAKAMRKL 559          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1414.2524.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMH8_9PHAE3.340e-13159.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPW8_ECTSI3.300e-12760.17RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A835ZDU2_9STRA2.060e-6042.41RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A1J0A9P1_9CYAN8.380e-2930.89RNA polymerase sigma factor SigD n=3 Tax=Cyanobact... [more]
A0A3M2AWN1_9BACT1.170e-2829.14RNA polymerase sigma factor n=4 Tax=Terrabacteria ... [more]
UPI0019DF3EF82.800e-2833.45RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI0008F9CA572.860e-2830.70RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A7S1TGP2_9RHOD3.470e-2832.11Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A831XPK3_9BACT5.770e-2829.32RNA polymerase sigma factor n=2 Tax=Bacteria TaxID... [more]
Q9AYR7_PHYPA6.890e-2831.11RNA polymerase sigma factor n=2 Tax=Physcomitrium ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 222..235
score: 60.6
coord: 431..442
score: 35.05
coord: 416..431
score: 30.69
coord: 246..254
score: 53.26
IPR000943RNA polymerase sigma-70PROSITEPS00715SIGMA70_1coord: 222..235
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 267..320
e-value: 2.5E-5
score: 26.2
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 370..457
e-value: 9.2E-9
score: 36.9
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 199..267
e-value: 1.4E-16
score: 60.0
NoneNo IPR availableGENE3D1.20.120.1810coord: 126..266
e-value: 2.8E-27
score: 98.1
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 130..451
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGBcoord: 130..451
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 386..442
e-value: 8.9E-9
score: 34.7
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 192..443
e-value: 4.0E-23
score: 79.8
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 376..454
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 125..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1414contigH-paniculata_contig1414:18227..20663 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1414.2524.1mRNA_H-paniculata_contig1414.2524.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1414 18051..21111 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1414.2524.1 ID=prot_H-paniculata_contig1414.2524.1|Name=mRNA_H-paniculata_contig1414.2524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=463bp
MDPTVAALRRGWGENRQLRRPRIVGTRLRSQCRCCCVAVAGALLSFISGD
TKTVSGFSVGGLSAGPRARVHGDFKWSSSRGVRRRPRVVAAEDSNPLGWA
MSQLGATRGNGDGTPRSVSTAGLEGWRDWKNLDVEDEKDLCEQILEHRRV
QNLQVELEVSAGRPVTVQEWAMAAGHPTAHQLFAALQEGRKAERTLVFCH
QGLVRSVANRYASLSKSLSCEDLVQEGSMGLLQAVSRFDPTKGCRFSSYA
VFRIKASILRAIANKDRLIRVPVHAQDAAMRLLAAEHALQSDSGLGATTP
TDAQLALALTMPEDTVALYRRGLPLQRHVAKLDHPAISHSAVGTDIRGGG
LGSEQWPWTRVGGGEAPRLAEMTLVREDMLRVMRECLTPEELQALRLRFG
MGEASGGRQAVEAALTFKEIGGMMEISGEGIRRMVHRAMEKLEASDEANG
LMMAMALAWSVG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR036388WH-like_DNA-bd_sf
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
IPR014284RNA_pol_sigma-70_dom
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2