mRNA_H-paniculata_contig14126.2518.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14126.2518.1
Unique NamemRNA_H-paniculata_contig14126.2518.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14126.2518.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.580e-10
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1 
Query:    1 LTESIINETVLTKVYMTKSPSEGWRIINHWFLPRSLGEIEKWSEEHEDVNMQKGEDPMRYLVRVDEIVGVLATLGEPKSERMVVKKIRKELTSDYEIERRTIL 309
            L ES     +   ++      E W  I  W LP +  E      + E V M  GE+P  +  RVD IV  +  +G  KSER +V+ I ++L+SDY++ER+T L
Sbjct:  451 LVESTSGSDIEETLFACSCVPEAWTAIREWSLPTTDAEQRLLERQLETVEMSPGENPKLFFARVDGIVNTMRAVGIEKSERQIVQTIVRQLSSDYDVERKTTL 553
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14126.2518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L089_9PHAE1.580e-1034.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14126contigH-paniculata_contig14126:1374..1730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.5920048-CDS-H-paniculata_contig14126:1373..17301622929124.5920048-CDS-H-paniculata_contig14126:1373..1730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14126 1374..1730 +
1691480740.3932738-CDS-H-paniculata_contig14126:1373..17301691480740.3932738-CDS-H-paniculata_contig14126:1373..1730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14126 1374..1730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14126.2518.1prot_H-paniculata_contig14126.2518.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14126 1374..1730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14126.2518.1

>prot_H-paniculata_contig14126.2518.1 ID=prot_H-paniculata_contig14126.2518.1|Name=mRNA_H-paniculata_contig14126.2518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
LTESIINETVLTKVYMTKSPSEGWRIINHWFLPRSLGEIEKWSEEHEDVN
MQKGEDPMRYLVRVDEIVGVLATLGEPKSERMVVKKIRKELTSDYEIERR
TILQRQDVSTVELEETVRS
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mRNA from alignment at H-paniculata_contig14126:1374..1730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14126.2518.1 ID=mRNA_H-paniculata_contig14126.2518.1|Name=mRNA_H-paniculata_contig14126.2518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig14126:1374..1730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGACCGAGAGTATTATAAACGAAACTGTGTTAACCAAGGTATACATGAC
CAAATCTCCAAGCGAGGGATGGCGGATAATAAACCATTGGTTCTTGCCTA
GATCGTTAGGAGAAATTGAGAAATGGTCCGAAGAACATGAAGATGTCAAC
ATGCAGAAGGGAGAGGACCCCATGAGGTATCTCGTTCGCGTAGACGAAAT
TGTCGGTGTCTTGGCTACTCTGGGAGAGCCGAAGAGCGAGAGAATGGTCG
TCAAGAAAATCAGAAAAGAACTGACTAGCGACTATGAAATTGAGCGGCGT
ACAATCCTACAGCGTCAAGATGTAAGCACGGTAGAGTTGGAAGAAACGGT
TCGTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14126:1374..1730+

>mRNA_H-paniculata_contig14126.2518.1 ID=mRNA_H-paniculata_contig14126.2518.1|Name=mRNA_H-paniculata_contig14126.2518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig14126:1374..1730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGACCGAGAGTATTATAAACGAAACTGTGTTAACCAAGGTATACATGAC
CAAATCTCCAAGCGAGGGATGGCGGATAATAAACCATTGGTTCTTGCCTA
GATCGTTAGGAGAAATTGAGAAATGGTCCGAAGAACATGAAGATGTCAAC
ATGCAGAAGGGAGAGGACCCCATGAGGTATCTCGTTCGCGTAGACGAAAT
TGTCGGTGTCTTGGCTACTCTGGGAGAGCCGAAGAGCGAGAGAATGGTCG
TCAAGAAAATCAGAAAAGAACTGACTAGCGACTATGAAATTGAGCGGCGT
ACAATCCTACAGCGTCAAGATGTAAGCACGGTAGAGTTGGAAGAAACGGT
TCGTAGCCTGACCGAGAGTATTATAAACGAAACTGTGTTAACCAAGGTAT
ACATGACCAAATCTCCAAGCGAGGGATGGCGGATAATAAACCATTGGTTC
TTGCCTAGATCGTTAGGAGAAATTGAGAAATGGTCCGAAGAACATGAAGA
TGTCAACATGCAGAAGGGAGAGGACCCCATGAGGTATCTCGTTCGCGTAG
ACGAAATTGTCGGTGTCTTGGCTACTCTGGGAGAGCCGAAGAGCGAGAGA
ATGGTCGTCAAGAAAATCAGAAAAGAACTGACTAGCGACTATGAAATTGA
GCGGCGTACAATCCTACAGCGTCAAGATGTAAGCACGGTAGAGTTGGAAG
AAACGGTTCGTAGC
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