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Homology
BLAST of mRNA_H-paniculata_contig1408.2494.1 vs. uniprot
Match: D7G2N5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2N5_ECTSI) HSP 1 Score: 128 bits (321), Expect = 1.530e-32 Identity = 66/97 (68.04%), Postives = 80/97 (82.47%), Query Frame = 3
Query: 267 LRRFFGELSAH--ADRH-RRLNVEKEIEDMPFEEALAITVVCFLLIAVALSSVYTMCKTRRIREGKGYQEVQRPENAFEMMSLGGREGVSMVLPQGY 548
L++F G+LSA + RH RRL E+E++ +EEALAI++VCFLL VA SSVY+MCK RR REG GY+EVQRPEN+FEMMSLGGR+GVSMVLPQGY
Sbjct: 4 LKQFLGDLSARTVSVRHQRRLTFASEVEELEYEEALAISLVCFLLSMVAFSSVYSMCKARRAREGMGYREVQRPENSFEMMSLGGRDGVSMVLPQGY 100
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal anchor |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-11_002880.1 |
Exons | 2 |
Model size | 1297 |
Cds size | 291 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1408.2494.1 >prot_H-paniculata_contig1408.2494.1 ID=prot_H-paniculata_contig1408.2494.1|Name=mRNA_H-paniculata_contig1408.2494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MGLRRFFGELSAHADRHRRLNVEKEIEDMPFEEALAITVVCFLLIAVALS SVYTMCKTRRIREGKGYQEVQRPENAFEMMSLGGREGVSMVLPQGY* back to topmRNA from alignment at H-paniculata_contig1408:17242..25355- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1408.2494.1 ID=mRNA_H-paniculata_contig1408.2494.1|Name=mRNA_H-paniculata_contig1408.2494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8114bp|location=Sequence derived from alignment at H-paniculata_contig1408:17242..25355- (Halopteris paniculata Hal_grac_a_UBK monoicous) CACTGTCAGTCATATCGTCGTCACTTAGACTAAAGTGTTGTACAACAAAA
AATAAAACTGCATGAATTTGGCATCATCACGCTTACACACACTGTACGGG
CAAGACAGGCGATTTTACCGTGCCGTGTACATCAACCACCCTTCCTGCCT
CTTACACATCCGCCAGTTGGGACGTCCAATCGAGGAGAGAAAGCACCGCC
AGTACCTTTTCCTGCTTCACCATATCATCACAGTAGTGTGCACCAGTCGT
GTCGCGGAAGATGGGGCTTCGAAGGTTTTTCGGGGAGTTGAGCGCGCACG
CTGACAGGCATAGGCGACTGAACGTGGAAAAGGAGATTGAAGACATGCCG
TTTGAGGAGGTGAGATACGTGTGGTGAGGATATTGATGATGCATGAGAGG
AGCACTTTTGGGGACAACGGAGGTGCCTATATTGTTCTTCCCCCCTAAGG
CTGTTCAATCCAGAGAGAGAGAGAGAGAGCACAAAGTCTGCGGATTTGAT
TTCCACATGGCGAAAATATTGTGGAGAGCAAAATGGACTCCTGCTCAATG
ATGTGTACTCAGCTCCAAGTTTATGGGCATTTGATGGATCAGATATAGAG
CCAGTTAGGCCACAAGCGCCGCAGGCTAGATAGGACTGGCCATGTACTAC
TGGGTGTAATGTACGTATGTAGTAAGACAATCAGCTCATCAAATAACAGG
CAGCGCGTGTCAGGCAAGATACAAGACCTCCACTCTATGCACAAAGTAAT
ACATTCAAAGAAGACTACTTGCCTAAATTCTGTGCATCAAATGACAAACT
GAAAGATCGGTTTTGGGTCACGTAATGATGGGGTTATTTCTACATGTGAA
GACTTTTTCTGCGGGACGACGCCGAGAAATAAGGTGGATATTGAGCTCAG
GCGACCTCGTCCTGAGGCACAAATCGCTACTCACCCATTTATCAATGCTG
GCTGTTGCTTCACCCAATCTTAGGCCTCCTCCGATCGTTTTTCAGTTTTC
ATTTTCGTCCAGCCTGTGACCACTTTTTTTTTTCAAATATTTTTTCAACA
CGTTCTCCAAAGCCTGATAGCGCGACGGAGTTCACGTCTATGGGGAAGAA
ATACATTGCTGCTGGTGAAGTAAACATGCACTGTGCTATCTTCTAAAAGT
AAATTAATGTGAACCTCGCCCGCTCCAGCGCACAAAACGACCGGTTGTGT
GTAGGATATATGTGCTGAAAAAATTACAGTAATGCTGGAGGGGATGTGTT
CCCATTTTGTTGAATCGTCCGCGGTTGACCGGAAATGGTAGCTGCTGGTG
TTGGACTATACAGCAAACTGGATTCGCAAAAATCCCCAGAAATTCAGGAG
GTACTCCAAAGGGAGTCGTATTCTACCGCGTTGTATCTTCCCTGTCAAAG
TTCAACGCCGCGAAACCTTCGCGCATGCACTTCTATATACGCATTTCCTG
TCCCAGAATTATCCATTATGTTTGTAGAGGCGTTTAATCATCTGCGATTT
TTTGTTGTTATCGTTTCTACATATTTTTTGGGGTTAATATCCATTTTTTT
TTAACAAATCCGTCAAGAACACTGGGTATACTTTCACCGGTATAAAAATC
AGATGGCCGGAAAAAAACACGTTTGACCAATTTTTGAAAGCAAGAATCAC
CTGTCAATGGAACTGTCCAAAAACGATCGTAAACGGGTCAACGTTGACCT
GGAACTTCGTCGGAAGAGCTTTTCGAAATTGGTATTCGTTTTTCTGCCTT
TTCAAATATCTTAACCACACCTGCGAGCAAGCCCTGATCTGGAGATATAA
GCTACTAAACGTTACGATGAGTACTTATGAGACAGAGGAAGTATATATAT
GACTGAGCAATCGATTCTGAGTAGCCTTGGTTCGAAGAAATCATCTTGTA
AGGCATTCTCTTTATGGGATGAAAAAAATTACAAAAATTGGAAATCTTCA
AGAAATTCAAATTCAAAATCCATTCGGGGCAAAACGCACCCCGCTCAGTT
GGAAATTTTCGAAATTTCCAACTGAGGTTTGGCGCAATTGGAAATTTAGA
AGCGGTACAGTGTGACTTCATGTACCGGCGGCATCGTGCGAGCACCTACA
GTAGTACAGTACAGACAGTCAGTCGTACCATAGCATAGGACAGTACAATA
CACCACCGTGCGCCTTTACCCGCGACGGAGCACACACCCTGTCCGTGATA
ATGCCAGTGAGGAAGGATAAGTACGAATCCTCCGACGACGAGGACGAAAT
GCTGCTGACTGTATGCCACGCACAACTAAACGGATTCCATGCGATGGGTG
GAGCTGCGCAACTGTTTCTGAACGACCTTGGGGCGGCGAGGGGGTTTTCT
GCTCTCGCCATCGTGCCTGTGGAAAAATATTTTAGGCTGCGTACTTCATA
TCCCGCCCAATTTTAGACTAGTGGACCATGGCATTACGATCACCTGTTTG
CGGCCACAAGCGCCTTCCCAAGTTTGGAACGCCTCAAAAAAAAAACCGAT
GTCCCGTAAGACGTGGTGATCCGATTTTTAAATTGGATATTACTCACTTT
GATTTTTGCAAACAGCAAGTTTTCAATCCCCATAAGAATTGGCGTAAGAC
CATCTGTTATGGGCAGAAATGAAAAAATTGAGAGGTTTGTACAGCAGCAG
ACGTACGATGGACCAGCAGACGAAGGCGCGTCCGAGGGTGTTCATCCGGG
CATGTGTGGGTGCGTGCATGTGCGCTTGTGTATACTGTATTGTGTCGTGT
GCCGAGCTGTACTGTACTGCTCGATGACATCTTTCAAAATACTGTACTTC
ACTACTCCACAATGACATCCTTTGATTGGCCGCGTCGTGTGGGTGTGTAC
ATATGTGAATTGTGAAATGTAGCGTTTTATTTTATACTGTACTGCTCGAT
GACGACAGCTTTCAAAATACTGTACTGTAGTTCTCCATGATATTGAGGCG
CTTGATTAACCGCGACGTGTGTGTGTGTGTGTGCGTGTGTGTGTTACAGC
TCAAGTGCGGCAGACAATGACATTTCCTATAGCTGTGGCACTTTTTCAAT
TTCGAACGCGGCTCAGGGCGTTCAGAATGGTGCTCATTTTGAACGCTCCG
ACCAAAATTGAGCCCCGTCCAAATTCAGGTGGTCAGTTTTTTTTCTTTCA
AATTGGGCTCACTTTTGTTCCTTAAGAGATTTTTTTTTTCAGAGCGTCCA
GAATTAAGCTCAATTTTTTTTTTTTGAACGGGTCCCATAAGAAATGGTCT
AAGGTGGATGTAGAAGACAGTTCGAGCCTGGGACTATCCTGCTCTCCAGT
TAAGATCTTTGCATCCGGAAACGTGGACGCTTACAACTTTTGTGGTATGT
ATACGTTTCATCATCAGGTATCAACCGATATCTGTTGCATATGCTATGTT
CAAGGCCGAGAAACCGATGCTATCGCTAGGCTGTGTGCGTGATAAGATTT
CGAGATCGTGAGCAAATCGCAGTGTGAAACGAATGTATGGACCAAGGTAA
AGATATCAATTGCAGTTATGCCGATATCGCCTGTAGTCAGACTACTTATC
TTCGTGCTTTTTTCTACTATTTGTTTCCCCCTCCGAGTGGAGCCTTTCGC
CGCGTAAAATATGCTGAGTTTCGGACCAAGACAAATAAATTTCGCGGGAA
ATTAGTCTCATGTGTGTGCAAAGATTGGAGTGTTGGTGTGACTTTTGCCC
ATTTGCACTTTTCCCTCCCAGAGTTGGACTAAAATACATCGATTAAAGAA
ACTTGGCAGCCACAAACGCCACGATAAGTGGTCTTATAAGGCCATCTCTC
ATTGGGTCGAAAAAACACACTCGAAAACGTAAAATCGATTTTTTCGTTTG
AGAGATTTTCGATTCCTCACCTTCTAGAGTCGAAAAACAAAAAAAATGGT
CTGGAGAAGGTCGTTTTGGGAAGAGCGACAGCTCCCAGTTACAAAAATCT
GGCAACTTTTTGATAGCCCTCGCATTTCATCAACAGAATCGATTTTCTCG
GAGTTCAACGAGATACGCAGGCGTTATGTTACTTTCCTCTCAGATTGTCG
ATGTTTCATATCACACGGTGGGACACCAACGATGATCGCAGATGCTATGA
GCACATACATAATCCAACGTGAGCCCGGCTGCCCTATCGCAAGTCTGGAG
GGATGGCAGACGTGTATTACATTAGCGCTTGGTGCTGTAGTGGCGGCTGT
CGAATACATGGAAAAAAAAGACAGGCGCTTTCCATTGCTGGGTGCAGAGG
CGCTTTCTGTAGAATCACCCATGTGCCTTGCACACCCGAACTGATATCTT
GAGCCCTTAGTTCCTTCCACACCCGGTCCACGCATGGGTTCGTCTTGATT
TGCATTGCGGTGGATGGTACATTCATGGTAGTCCGCTTTCACGGGATGAG
GATGTGCTGTGTGCTGGACGAGGCCTGGTCTGTTTGAAATTTTCTCGCTA
ATTGTGCCGCTCACAAAACAGGATGAAGCCTGGTGTCTTTGGAATTCTCT
CGCTAATTGTGCCGCTTACAAAATGACCTTTTTAATTTTTCGACCCTATA
GGGGATGACCTAAAGGCGGGAAAAAAATGTCCCCAACTTGATTTTAGAAA
CACGTCTGCGTTTTCCCTTTTTAACAAAAGCGCCAGGGTTCCATAATATT
TTCTGCGCTGGTCTCGAGCTGTAGACGGTTCGAATCCGACATTCCGCAGA
TGGGGACGGGTTCCACGTACGAGAGAACGCACAGTATGGGCGCGGTCGGC
GGAGATTTAGCATATTGACGCGCTGCTTGAAAGCGCATTTACACAATGGA
ATATGGTTGGTAGCCCTGGTTATATCCGACCCGTCTTGTTGCTGTCCGTA
CGAGAACCGCCTATCTTCATTAGGTCAGTCATACTCCTGACCTGGGTCGG
CCCTCCCCATTCACAGTGGCGCCCTAGCAGTATTTTTCTCTAGCACTCGA
ATAATGACACGAAGCGATTGATGTCAATGCGCTCAAGGGATGTCGAACTT
CGCGAGGATAAGTTCACAGCGAGAGATACGTTATCTACGTACGCCCTCCA
AAGAGTTTGACATTCCACCCATCCCGGCACACAAATGGCTGACGTGTGTA
CCATGCAAATTTCGAAAACATAATACGTGGCTCGCTTGTACAAATCCGAA
ACGCCATTCCCCAATTGCGTGCTTACAACAGAGAGTCGCGGATATCTCGC
GATACGCTAACGTGACGGCGACCAATGTGCACAGGCTGGCAGCCCAAGAC
ACTACGCAACAAATGACACAAATAACAGGCAGTGTCTTGGTGACCCAAAG
AGTAAGAAAATATATACTTATTGTCTATCAGTGTTTCACATTTCGCTTGT
TACTGCGATCATGATAGTGTTGGCTGTACACCTGGAATCACGACAAGAGA
CACGTGTTCCATGAAGCTCAAGAGTATAGCTACCTTCTCACGGTGGTCTA
AACGGAAACCTCATTACGAGGAAGTCAATCGGTGAACCTAGTAAACGCGA
AATGTGTTTTCCCGTATACTGCGTTACCTCAGCTGTCGTCGCGTACGATC
TTGATCGGTGACGGTAAGTGGTACTAAGGGCCGTTAGCCTGTGTAGTTTG
TATTGCCATTGTGTTAGCACAGCGTGAGATATATGCGCGATTGTCGGTTC
TGATCAAGCGATTGTAAAATAACGTTCGGATTAATACGATCCAGTCGAAA
AGAAATGAACGCCTCTCAGCGCAGTCTTCAGCTGGCCTACTTCTAACAGA
CAGAAACCCCGGCGATACAAAACATGTCCCAGGTTCCGCGAACCTGAAGA
GAGAGAAGGCCTTTCTCGCTCACGCAAAGTAGGACATAGCACATTCACCA
TCGTCGGGTAGTAGTTAATTAGCGTCGTCTTTAGGCTTGAGCTGTCGCTC
AAAGCCGCGTGCTTTCTTCCGAGCCTCTAGTTATTATTTGCGCACCCTTT
TGTCATCAGTTTCATGAGTTATTTTCTGTTTTCTGTTTTTGCCTGACGAA
CACGACATTTTTATTCAGTTCGCTCCCCACTCTGAAACAATATTATCGGA
CATTGGCGACGTGGACGAACCACCCACTTATGGGCAACGCATGATGGTGC
TAATCCAGGTCTTCCACACGCCCCACAGCCTAGATTCGGCAACTCGCAGG
CGCTTTAGTTACGGCGAACGTATCCTCGAACGCCACAAAATGTAGATGTT
GGAGGAAAGCAAGGAGAGTTGCGAGAGAAGGAGGAAGATAGACAAATCGT
TATTATTCGATGTAGAGATGCAGTTGCCTGGCATTAGTCACGGTCACACA
TGGTACATTCGAACATAGTGGAAAACTGGGAATGTCAGGAAGAAGCCAGC
CGACCACGCAATCCCAAGCGTGGAACCGGGACGAGCACCAAGCAACACCG
AGTCGTAGAGTGAGGAAATGGAGGAGGCGAAGCTCACTGACGGCACTCGC
GGCACACGAGAGCGTCGGAAACCAGAAAAGCGCGACCCTTACCATCATAG
GGCAGCCGTTCTCATTGCCTACGAAAAAGTGCCCTCACGGGGTAATCACT
CAAGCCACGCGAACGGCTCGGTCATTTCCCCTGTGAAGGTGTCGATACGT
ACGCATTCCGAATTGTTCGCCCCACGATATCAAGGGTCGCTCTCCTCTTC
TTGATGTTATAAGTGACGTGGTACGAGAGTCCGATATGGCCTGGTGAAGG
ACACTGGTGCACCGGGCGAGCGAGCCGTCAGTGAGCTCCATCTCCCCCGT
CCCCCCCCCCCACCTCACCTACTCCGTCTGCTTCCTTGCTGACGCGGGTA
GGAAATGACGGTACGCCCGCCTCCACGGGTAGTGAGTAGTAATGTTCGAA
GGAACCGTCAGCACCGGAACAAATCAATAGGGTATGATGAAAGATAAGGC
AGCATTTCGTAGTTTGGAGGGAGCCTGTGCAGCAGAATAACGTATAACAC
GCAAGGTATACACACATGGCTGACGGTATGACATGAGATCTACTGCACAT
TGTAGTCGCGTAGGCCCGATACCGCCTCGAGCGAAGTTGAAACGCTCCAA
ATTGCGGTGCACACATAGCCGGCGCATACATACCTTGAAAGCTACCCATA
TGCAGTTCTAAGGTCTCTGACTGCTATCAACTGTCACTCCCTGCCCCCGT
TGCTTACTCTTTGTTGCAACAAATAGGCGTTGGCCATCACCGTTGTATGC
TTTCTGCTGATCGCGGTGGCTCTCTCCTCGGTGTATACCATGTGCAAGAC
GCGTAGGATCCGCGAAGGGAAGGGTTACCAAGAAGTTCAGCGACCAGAAA
ATGCTTTTGAGATGATGTCGCTGGGGGGACGGGAAGGCGTCAGCATGGTG
CTACCTCAGGGTTACTAGTAGCGGTTAACTATATGTTTTTCTTTCCTCCG
ATTTTCGACGTTTGTTTTGAATTTTCTCTATGATATTATTTTTTTAGCCT
TGTGATCACGCCGTTCTGCTCACGTGGCAGACTCTACTATGCTATTGAAC
GGCCGACCTCTTACCTCAAGATTTGTCTCCTTATGATGTTATTTTTTTTT
AATGTTCAAGTGTATGTATATGTATGCGGTTGGTTGAGGAGTGATGGAGA
TTTGTCAATCCTCAACGGTGATCGATTGCGTTGGTACACCCACTCACTGC
TAAATGTGTTTTCGTTGTTCTTGGAGGATAAGCAATTGCATGGCATTATT
CCATGTATTTCGGCAGTGCGAAAGAGCGCGAGTTGTAGTATGAGAGAGCG
TTATCCCATTTGTAGTACGCAGTGATGAAGTGAAGAAAATCTGAGCAGCT
TGAGGGTGTTGCGAGATCAAGGGTTGCTGTATGGGCGTGTCCACCCTAGG
CGAAGAGTTGTTGCTTTTTTTTTCTTTTTGTATTGCGTCCACACACGGTG
CACGAATTATCGTGCGGTGTGGAACCTCTGCCTTTTTTTTTGTTGGTACT
GTGTTGAGATATTCGAGTCTTGAGAAAGGTTGCATGGGAGCTAGACAACG
TAGAAGCAAAAAATAATATATTTCAGCTCCGTCAATATCAAGGGTTGTAA
CGTAAGCCGCAGGCATGCGACTTCGTGCAGATAGATCAAAACAGACAGGT
GGTAAAAACTCTCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1408:17242..25355- >mRNA_H-paniculata_contig1408.2494.1 ID=mRNA_H-paniculata_contig1408.2494.1|Name=mRNA_H-paniculata_contig1408.2494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig1408:17242..25355- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGGCTTCGAAGGTTTTTCGGGGAGTTGAGCGCGCACGCTGACAGGCA TAGGCGACTGAACGTGGAAAAGGAGATTGAAGACATGCCGTTTGAGGAGA TGGGGCTTCGAAGGTTTTTCGGGGAGTTGAGCGCGCACGCTGACAGGCAT AGGCGACTGAACGTGGAAAAGGAGATTGAAGACATGCCGTTTGAGGAGGC GTTGGCCATCACCGTTGTATGCTTTCTGCTGATCGCGGTGGCTCTCTCCT CGGTGTATACCATGTGCAAGACGCGTAGGATCCGCGAAGGGAAGGGTTAC CAAGAAGTTCAGCGACCAGAAAATGCTTTTGAGATGATGTCGCTGGGGGG ACGGGAAGGCGTCAGCATGGTGCTACCTCAGGGTTACTAGGCGTTGGCCA TCACCGTTGTATGCTTTCTGCTGATCGCGGTGGCTCTCTCCTCGGTGTAT ACCATGTGCAAGACGCGTAGGATCCGCGAAGGGAAGGGTTACCAAGAAGT TCAGCGACCAGAAAATGCTTTTGAGATGATGTCGCTGGGGGGACGGGAAG GCGTCAGCATGGTGCTACCTCAGGGTTACTAG back to top
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