mRNA_H-paniculata_contig14068.2487.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14068.2487.1
Unique NamemRNA_H-paniculata_contig14068.2487.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14068.2487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14068contigH-paniculata_contig14068:178..774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size222
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.8701513-CDS-H-paniculata_contig14068:177..3621622929120.8701513-CDS-H-paniculata_contig14068:177..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14068 178..362 +
1691480738.737321-CDS-H-paniculata_contig14068:177..3621691480738.737321-CDS-H-paniculata_contig14068:177..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14068 178..362 +
1622929120.8847146-CDS-H-paniculata_contig14068:739..7731622929120.8847146-CDS-H-paniculata_contig14068:739..773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14068 740..773 +
1691480738.750604-CDS-H-paniculata_contig14068:739..7731691480738.750604-CDS-H-paniculata_contig14068:739..773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14068 740..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14068.2487.1prot_H-paniculata_contig14068.2487.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14068 178..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14068.2487.1

>prot_H-paniculata_contig14068.2487.1 ID=prot_H-paniculata_contig14068.2487.1|Name=mRNA_H-paniculata_contig14068.2487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
WRETAYISGAFGVIMAVVLFLTVDHHPENLSPRERFSFWHQEACEGDDAV
VVASPKTPASTSSLFPETHEQVR
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mRNA from alignment at H-paniculata_contig14068:178..774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14068.2487.1 ID=mRNA_H-paniculata_contig14068.2487.1|Name=mRNA_H-paniculata_contig14068.2487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=597bp|location=Sequence derived from alignment at H-paniculata_contig14068:178..774+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAGAGAAACTGCCTATATATCGGGGGCATTCGGGGTAATCATGGCGGT
CGTTCTGTTCCTGACGGTGGATCATCACCCTGAAAATTTGTCCCCCCGCG
AGAGATTTTCTTTTTGGCATCAAGAGGCTTGCGAGGGTGATGACGCGGTG
GTGGTGGCCAGCCCCAAGACACCTGCGTCCACGAGGTGCGTGTGAGCGAA
CCGGAGGTCTCGATCGGCTGGTCGGCACTACGGCATCGCTACAAAAAACA
CACACAAGTGGCGAGTAAGAAAGGAGGGGATGGAGGAACGAATGGAAGAT
GACATTTGTCGAGAAATGGCACCATCGACAAAGTATTGGTTAAAGTCGCG
AGTTTTGTGCCTGCTTTGAAGTAATTCACGTAATATGCACAGGGGTGAAC
TGCAGCAAAACCAGGTGATGAAAACGGGAGCAAAGCGAGTTGACAGTTAG
TAGTGCGCTTCGGCGAGAGTCACAGCAGTTCAGGCGTGTTATTCCTCATG
CTCTCTTCTATCGTCCTACCCCCCCTTGCCCCCTTCCGCCCCTCCCGCCG
CCGCCGACTCAGTTCGTTGTTTCCGGAAACACACGAGCAAGTCAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14068:178..774+

>mRNA_H-paniculata_contig14068.2487.1 ID=mRNA_H-paniculata_contig14068.2487.1|Name=mRNA_H-paniculata_contig14068.2487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig14068:178..774+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAGAGAAACTGCCTATATATCGGGGGCATTCGGGGTAATCATGGCGGT
CGTTCTGTTCCTGACGGTGGATCATCACCCTGAAAATTTGTCCCCCCGCG
AGAGATTTTCTTTTTGGCATCAAGAGGCTTGCGAGGGTGATGACGCGGTG
GTGGTGGCCAGCCCCAAGACACCTGCGTCCACGAGTGGAGAGAAACTGCC
TATATATCGGGGGCATTCGGGGTAATCATGGCGGTCGTTCTGTTCCTGAC
GGTGGATCATCACCCTGAAAATTTGTCCCCCCGCGAGAGATTTTCTTTTT
GGCATCAAGAGGCTTGCGAGGGTGATGACGCGGTGGTGGTGGCCAGCCCC
AAGACACCTGCGTCCACGAGTTCGTTGTTTCCGGAAACACACGAGCAAGT
CAGGTTCGTTGTTTCCGGAAACACACGAGCAAGTCAGG
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