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Homology
BLAST of mRNA_H-paniculata_contig1405.2477.1 vs. uniprot
Match: D8LBX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX6_ECTSI) HSP 1 Score: 175 bits (444), Expect = 2.950e-49 Identity = 90/132 (68.18%), Postives = 106/132 (80.30%), Query Frame = 1
Query: 319 EWERIAQDTLESVLGPQFAAKYQMYTEEASEVMRSLSKIFSNLMKRYVVGEIVLESMTIHLSTAVWRDLATSAFLFWQEGGAGIRDLLPSKAVEFRFDVLLAARDMGCDSKPRTALEIVTALTKRTMVNLGR 714
EWER+AQ TLE G +F AKYQMYTEEA+ +MR LS+IF NLMKRYV+GEIVL+ M+I LS AVWRDL TS+F W EG + +R+LLP++ VEFRFDV L A +MGC S RTALEIVTALTKRTM+ LGR
Sbjct: 34 EWERVAQATLEHAFGHEFTAKYQMYTEEAASIMRRLSRIFVNLMKRYVLGEIVLQDMSIQLSAAVWRDL-TSSFFQW-EGASVVRELLPARGVEFRFDVSLTASEMGCASGSRTALEIVTALTKRTMLQLGR 163
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-20_003650.1 |
Exons | 4 |
Model size | 719 |
Cds size | 717 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1405.2477.1 >prot_H-paniculata_contig1405.2477.1 ID=prot_H-paniculata_contig1405.2477.1|Name=mRNA_H-paniculata_contig1405.2477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
FNKTSNVRDTDRHPRTVSPHSSSLSTGVVGGARVPSAAAAAAVTGGRGLH GSEDGFFHHGTAGGHHLKRTGSLDWLRPGSSGPAAAATAVGGDGSDTEGG VNPGFDEWERIAQDTLESVLGPQFAAKYQMYTEEASEVMRSLSKIFSNLM KRYVVGEIVLESMTIHLSTAVWRDLATSAFLFWQEGGAGIRDLLPSKAVE FRFDVLLAARDMGCDSKPRTALEIVTALTKRTMVNLGR* back to topmRNA from alignment at H-paniculata_contig1405:19084..25895+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1405.2477.1 ID=mRNA_H-paniculata_contig1405.2477.1|Name=mRNA_H-paniculata_contig1405.2477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6812bp|location=Sequence derived from alignment at H-paniculata_contig1405:19084..25895+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TTCAACAAGACGAGCAATGTGCGGGATACCGATCGCCACCCACGGACCGT
GTCACCTCACTCTTCTTCATTGTCGACGGGCGTTGTCGGCGGAGCGCGTG
TCCCATCGGCAGCAGCAGCAGCGGCGGTGACCGGGGGGAGGGGGCTACAC
GGGAGCGAGGACGGGTTTTTCCATCACGGGACTGCCGGGGGGCATCACTT
GAAGAGAACCGGTTCGCTGGACTGGCTACGCCCTGGTTCTTCTGGGCCTG
CGGCGGCAGCGACGGCGGTGGGCGGAGACGGGAGCGATACGGAGGGTGGA
GTTAATCCTGGTTTTGACGAGTGGGAACGGATTGCGCAGGATACGCTGGA
GTCCGTCCTCGGACCGCAATTTGCTGCCAAATATCAGGTCTGAAGAGAAG
AAGGGTATTATGCGTTCAACTGTGTCATCTTGTGATGGTAGCTATGTCGA
TTTCGCTGCATTTTTGTCTAACTCTGGGTTTGTTTGCTCGCTTTGCTCAG
AAACAGTTTTCGCCGCTCAAAGGGCTTTGAGAGTTTCCCTCTGCTGGCTG
TCCCATCCTGTCGAGGACGGGTCGTAATGGATTAACAGTTATGGCAAACA
GGACGTGAGAATGCCCCCACTGCTGGCCGTATCTCGTGCCACTTTATATA
TTTGCTTCGGCGATAAATATATTCCGATGTGTATTACGGCCAAGGGCTAA
AATGCTGCCCCTGCTGCTACTGATCCTGAGTGCCTTGCTCATCGCGTTAT
GTTTCTGCCGGGGCGTTGCTGTTTCGGCTGCTCTCGCGCGCCAACCCGAT
CGGTTTCCCAGATGTACACAGAAGAGGCGTCGGAGGTGATGCGGTCTCTG
TCCAAGATTTTCAGCAACCTCATGAAGGCGAGAGAGAGACAGAGAGAAAG
AGAGAAAGAGACAGAGAGAAAGAGAGAGAGAGGCAGAGAAAGAGAGGGAG
ACAGAAAGAGAGACAGACAGACAGAAAAATAGACACACAGACACACAGAC
AGGCAGACACACAGACAGAGAGACACACAGATGAGAGAGGGAGAGAAGTT
TGTATTTTGTCTTGACTTCTCTTCTGGTAGAAGTTCAGTGGACCAGTTGC
TCAGACCCCTTCGTCAACTATGGGTAGGCCGGCAGCGTACCTGACTCAGA
ACCCCTCCCCCTGTGACCACCATTATTACATTAGCACATTGAGTGATGGT
AAGGATAGGACGCAGGCCAGGTGGTGATAGTCATTGTATGAAAAAATTCT
ACAGTTTGCGGTGTTTTTCGTGATCATGTTTTTTTCCCGAACATTTAAAA
ATGACTGATGGCAGGTTTTTCTCGGCGGCATATATACCCGTGACCTAATT
ACTAGTCTTGACAAGTTTAGGGTAGGCGCCGGTGGGCTCGTACTCTGTAT
GCGAGTGAAATGTGGGAAGATATGCGCATGAGGGTGTGAACTGAAATAAA
ATATGCAAGTTTCTGCGAAATACAAAAAACGTGGCCCAGCCTTGCTCTGG
CCTTCCCTGGACTATGTCTTTTTCGAAATTCATGCGACATTAGGAACATG
CGAAATCTGAGGGAATATATATATATATATATATGTTTTTTATTGATTTT
GCTGGGGGTGGAAGACTTTTATCTTTAGGCGTATTAACTGTTTTATTTGT
TGTGTGTACTTGGTGGCGGGATATTATTCGTGAAGGGTTGTTCGAGGGGC
ATCATACTTTAGCCGCTCAAGATGGTTTACGTTTAGGTATGATTTTATTT
TTTGTTTCTGAAATTATATATTTTTTTGCTTTTTTTGGGGCTTTTTTTAC
TTCATCTCTTATATATATAAAGCATACCAAGTAACGCCGCTTCTCATGGT
CCGAAAGGAGCCCTCTCTGGAGAAAGCATTCTTGGCATTTCTCAGCGCGT
TTTTCATCCTGCTCTCCTTCGAATGCGAAACGGTGAGTACATAACTTCGT
CGTCGACATCTCGACATACCTATCGACAATCGGAGTGGAATCTTGTGCGC
CATGTATTAACACACCAGCCTATGGGTCGTGCCAACCAAGTTTGCCGTAT
TAAACGCTTCCGGCTACATGTAGATTGTCTCTCAATCCTCCAGGAACCGA
GGGGTCGTATTTATCGACCACAAGGTACTAAGTCATTGTGCTTCGCACTC
GTGAGTTTGAATCTCACCGGTGTCGCCATGTGAAGAGAACCCTCGGTCGG
GATGAGGATGTCCAAGCCCCCCCCGAAGCTATATATGGAGGTTACTTGGT
GGTGCCTGCTGGCGTTGCCGAGGCTCCCGATATCGCAGATTCCCGACAGG
AAAGGGTGGTGGCTTAGGTTTTCTTTTGGCGATGTAGGCGATATAGGCAA
GGGGGGACAGACCGTTGTCCAGGGTAAGAAAGCGAAGTGACCGGGTGGGG
GTGTTGGTTCCGCATGGTGGTTTCGCGATCATGTGCATTAGCGTTCGGGT
CTCTCCGACCGGGAGGCCCTTGCGCAATTGATCGGGGCGAATCGAGGGCT
CACCCAACTATGTGTTCTGTCTCTGGATAATCATTTGTCTGCGTGTGTGG
TGTAACATTTGGAACTTCTGATTTTGGTCTGCACACAAGAGTGGATCTAC
TAACGACCAATTGTGGATAACGATGAACATGTAGTCAGTATGCGTATACC
AGCCCTAGACAGCTGGATAGCATATCCCCGGTTTGAAAGATATGTAGTTG
TTTTTGACAGTTCGCGCCCTATTTTTTTTAATTCAGTGTGGAGCGAGGAT
TGCCGTTGTCTCGTGATGACCAAATAACGCTCAAACTCTGCACAGCTGAG
TTTGGGGTCGTAGACTTGTATAAGGGCTGAGATTTAAAAATACATGGGAG
GACTTGTCCCTCTGCAACCCAAGGTGTAGTGATATTTCGGTGGAAGAAAA
ATAATTGAACTTTAACACCAGAACACGCGCCGTGAAAAAAAAATCACGGC
CGAAAAAAGGCCATTTTCCAAGACTTTTGGTATTGTCTCATAAGTACAAT
ATATTATGAATAGAGACGCATTTGAATTATCCACGATTGAAAGAACAACA
GATGTAGAATCCTACATGTTTTTGAGGTTAAATCACAAAATATGAAGTCA
TGCAGTTGATTTTAACACCAAAACACATGTCGTGAAAAAAAATCGCTCGG
CCGAAAAAGGCCAAAAAGGGCACTACTTTTTTCGGCGGAATATATTTTTC
CCGGCGCGTGTTTTGGTGTCAAAATTCAACTGTTTGACCCAAAAAGTTGT
TATTCAACCCCCAAAACATGTAGAATTCCATTAAAAATACAAAAATAAAT
CGGAGACGTTTAAAATTCCCCTATAATCTGAACTGGTAAAATACGCGTTC
TTTTTTTGTATTTGCATACCCTGTGATAACAAGATATCCTAGAGCCGAGA
GCATATCCTGACATTTAAAAAGCTTGTATCACTCATGCGCCAGAGATCCA
GCCGGAATTGCTTAACGGAGAGGGAGTTTGAATGCCTACTACCCCTCCAC
ATGCTGAAAATAGCGTATGCCCCCATCAAATTGAATAATTACAGTACGAG
GTGCCTCTAAAGGATCTCCTGGTTGGGATGAGGGCCAAATCTTATCGTAC
ACCATCACCCGCAATAATACTTTCTCATGTTCATAGCATGAGATTTGGAC
AGGACCACAATGAGCTCAATTTATTACACCGACCGAATATCTCTCAACCC
CTTGGGATTTCTGATCCTCGAATCAGCTGTGGAGTGCTTGATTTCCATTT
CGTCAATCGTGGAGAATCCTACGCTAGGCGAGCTAGCGACTGTCATAATT
AGAGAGATGACATTGACACGTACGGGGGCAGCCGTGGTGGGCGATGTCCT
CTTGAGACCTGCACAGAGGTATTTACAAATATCGTTCCACACCGTTTCTA
GTTGGTTTTCGCGTTTTTTTTCGAGTCCGTCACGCCAGCTCTTACGAACT
GTTTTCAAGAAAAAAATCGTGTCTGCGTGTTCTTTCTCTACACTTAGTCG
AAGATAATAAGTCCCCAAACGGCAAAAAAATACAACCCTTTTTGAACCTG
AAATGCACTAGCCAGTTGTCTAGAGCTGGTGAGGCACTCAGTCGACGTGT
TCGTCATTATTCACGATCGGTCGATCGTAAAATATATTTCGGCTGTGACA
TAGTCCGGTTCCTTGAGAGTTATGACGTGAAAAAATAGGAACGTGAGACC
TCCGACGAGATATATCTCAAGTAGTATATCAGACTCCCTCGCGACCGCGA
TCAACACCGCGCTAGCAGATTTTGTGACATTAAGGATATTCAGCGGGGCT
GGCCAACCGTAACCCCTCCCCCATTCTCGTTTTCCTCATCCCGTCTTCTC
TTGCTCTCGTCACATCTTATGTCTTTTTGTTGCCATCGTATAACTCAGCG
GTATGTCGTAGGCGAGATCGTGCTGGAAAGCATGACGATCCACCTGTCGA
CCGCGGTGTGGCGGGACCTGGCGACCTCGGCATTTCTGTTCTGGCAAGAG
GGGGGCGCAGGCATCCGTGACTTGGTGAGCAAAATGAAAGGGCGCTTACG
GTGGAACTTTAGTATTCCATTTCGTCTTGCACTCCTTTGCTTTTACGCTT
CTATACTAGTAGGGAGGCTACGGCTACACCGGTGATGGCCACTACATCGA
CGATGGCGCCGTATCTCGAATCCATCCACATGGACTCGATGCCCTCGTCG
TGGCTCGCTTACGCATGTAGGCTCACTTCAGATTCAAGTTCCGTTTATAA
TCGTAACGTGATAAATATCTGCTCAAGCTGTTGAAGTTGCTCACATCGAG
GTAATCGCCATTTTTTGTGGACACTCGTATAAAGGTATACGAAGTCTTTA
CTCGAATTTTAACATTTTTGTATCCCCAGACCTGCATGGACCCCATTTAA
TAACCCCGTCTAGTCCTCACCTAAAAGACAGAGGAAATCAACGTGTAGGA
CATGATTACGGGGACAGGGAGCCCCCACTGCAGAGAGTACATATGGAGGA
GACATAGACTCTAAGTTGGCATGGTTTGCTCACAACCAACGACGGCAGCG
TTCGATATTCATTGATGTGTTAGACAGTGCTCACCACTTGATCGTACAGT
ATGATTGAGGTACACTACCTCAGAGAGCGTAATAGTGTACCCAGAAAGTT
ATCGGGAAGTTCTGGTCCGGGGGATTCTGATTTGTGTCTGAAAATAGTTT
TTTTGCCAACGCACACAGTACGTAGGGGGTGGGGGTTAGGATTAGGGTTA
CTGTTAGTCCCAGCGCTGGTCCTGCTCGCGTAGGGGCGCGAAGATGCGTG
AACCTTTAAAAGAAAGGGCTGTACACCGTTGTGTTCGACTAAGTGGTAAA
CAGAGCTCGTGTCAGATAGCATTTTCGCTTTGAAGCTCTACATCCGGAGG
TTAAAAAGCTTACATGTACCAGTCCGTGCTGTTGGGTCAACTTCCTCGGC
AGGAAGAATTGTTTCGGGTGCTCTATTTGGTATATACCGGCAATGCTGTA
CCGCTTTCGCCCCGGATTTCTCAAGCAAAGAGGAGCTGTTCGGTGCGATT
TGTGAAAAACGCCGAAAACTCAAAAGAGTAAGAATTTGATCTGTCGGACG
TGTACAAAGTTGCAATAACTCTATCCATTGTAACACGCCTTTTTCGGCTT
CTTGCTTTCCTTGCAACCCCGCCTCTCAATTTCGTTTATTTGTGGTTGAG
GTGGTCAGCAATATTGACATTGCGGAATGCACCTCTGTTTTTTTCACGTT
TATGATCATTGTCACGATTCTACTGAAAGACTCGAGGTTATGGTATTCTG
ACCAAATTTTCAATTTTCGAAACGTGTGTCCATGTTGTTATCCCCCACCC
GCCCCCCTCCTCGGGCGCATATCGAGGATGCATGATCAATTGTCTAAACA
AGTATGGTATGCGCAACATAAGCACATCCCCCGGCCCTCCCACGTACACG
TCAAGTTCGTGTTCTCGAAGACCCAATGTTAGAGCTGTGTATCGATTATT
TGAAATCATGCATATACACATGTGTGAGCGAAGCGAGCCGTCCGCGCGAA
GCGCCAGGCGAGTGGTTTGCCGCGAGCCCCAACCGCCCCTCGGTTGATGA
GGGGGCCTTGACAAAGGCACCGCCGGAGGCAGGAAAGTTGTTTGTTTTAG
TTTAATCTCTCTTCAATATCGAGGATCTCGAGTACCTCCGGAGGCAGTCT
GAACTCGAACTGACGGAATAATTTTGGAGAAAAAAGAGAATTTCCAACCA
TAAAAAAGTTTACAAAGAAACACACTGTGAGGTTGCCAACTGGTCGTGAG
GCTAGTGGGAACGAGCACTAGAAGAAAGTGAGCCAGGTAGAATGTCATCT
GCTTGCTAAAAGTCGGGTGGAGCTCATGCGTGTGGTACGCTGCTTCGCGG
GGGTGCTATTCCACGTCGTTCGTGTGGTGCTGTGGGCTGTTGGGGCATGA
CTATATCATGTCCACATTCAGTGGATTGTGACCGTATTATTCGGGAAATA
TATCGATATATGGGGACGACGACCGATCGAGGTATATCTATCGGACCAAT
TCAGGGTGTATCGTTTTTGTATCGGTAGTGATACACATTCCTGCTCAGTG
TCAAATGGCCTAATAGCCGAGGCATGCCCGACCTCCGTTCGACCCTCCCC
GCCCTCACTCTCCCCTTCCCGCAGCTACCGTCTAAAGCGGTGGAATTTCG
GTTTGATGTGCTCCTCGCCGCGCGAGACATGGGATGCGACTCGAAGCCTC
GAACAGCTCTGGAAATCGTCACCGCTTTGACCAAACGAACGATGGTTAAC
CTCGGTCGGTAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig1405:19084..25895+ >mRNA_H-paniculata_contig1405.2477.1 ID=mRNA_H-paniculata_contig1405.2477.1|Name=mRNA_H-paniculata_contig1405.2477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig1405:19084..25895+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TTCAACAAGACGAGCAATGTGCGGGATACCGATCGCCACCCACGGACCGT GTCACCTCACTCTTCTTCATTGTCGACGGGCGTTGTCGGCGGAGCGCGTG TCCCATCGGCAGCAGCAGCAGCGGCGGTGACCGGGGGGAGGGGGCTACAC GGGAGCGAGGACGGGTTTTTCCATCACGGGACTGCCGGGGGGCATCACTT GAAGAGAACCGGTTCGCTGGACTGGCTACGCCCTGGTTCTTCTGGGCCTG CGGCGGCAGCGACGGCGGTGGGCGGAGACGGGAGCGATACGGAGGGTGGA GTTAATCCTGGTTTTGACGAGTGGGAACGGATTGCGCAGGATACGCTGGA GTCCGTCCTCGGACCGCAATTTGCTGCCAAATATCAGTTCAACAAGACGA GCAATGTGCGGGATACCGATCGCCACCCACGGACCGTGTCACCTCACTCT TCTTCATTGTCGACGGGCGTTGTCGGCGGAGCGCGTGTCCCATCGGCAGC AGCAGCAGCGGCGGTGACCGGGGGGAGGGGGCTACACGGGAGCGAGGACG GGTTTTTCCATCACGGGACTGCCGGGGGGCATCACTTGAAGAGAACCGGT TCGCTGGACTGGCTACGCCCTGGTTCTTCTGGGCCTGCGGCGGCAGCGAC GGCGGTGGGCGGAGACGGGAGCGATACGGAGGGTGGAGTTAATCCTGGTT TTGACGAGTGGGAACGGATTGCGCAGGATACGCTGGAGTCCGTCCTCGGA CCGCAATTTGCTGCCAAATATCAGATGTACACAGAAGAGGCGTCGGAGGT GATGCGGTCTCTGTCCAAGATTTTCAGCAACCTCATGAAGATGTACACAG AAGAGGCGTCGGAGGTGATGCGGTCTCTGTCCAAGATTTTCAGCAACCTC ATGAAGCGGTATGTCGTAGGCGAGATCGTGCTGGAAAGCATGACGATCCA CCTGTCGACCGCGGTGTGGCGGGACCTGGCGACCTCGGCATTTCTGTTCT GGCAAGAGGGGGGCGCAGGCATCCGTGACTTGCGGTATGTCGTAGGCGAG ATCGTGCTGGAAAGCATGACGATCCACCTGTCGACCGCGGTGTGGCGGGA CCTGGCGACCTCGGCATTTCTGTTCTGGCAAGAGGGGGGCGCAGGCATCC GTGACTTGCTACCGTCTAAAGCGGTGGAATTTCGGTTTGATGTGCTCCTC GCCGCGCGAGACATGGGATGCGACTCGAAGCCTCGAACAGCTCTGGAAAT CGTCACCGCTTTGACCAAACGAACGATGGTTAACCTCGGTCGGTAACTAC CGTCTAAAGCGGTGGAATTTCGGTTTGATGTGCTCCTCGCCGCGCGAGAC ATGGGATGCGACTCGAAGCCTCGAACAGCTCTGGAAATCGTCACCGCTTT GACCAAACGAACGATGGTTAACCTCGGTCGGTAA back to top
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