mRNA_H-paniculata_contig14038.2467.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14038.2467.1
Unique NamemRNA_H-paniculata_contig14038.2467.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Match: D7G6D9_ECTSI (Arginyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6D9_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 1.580e-86
Identity = 187/413 (45.28%), Postives = 229/413 (55.45%), Query Frame = 1 
Query:    1 QVTVHGDDPAEITSDQFRRFLVDSPLVRRA------RTRSSSAMRTRDXXXXXXXXSRGSYAAPEGEANEETEGRDSLSVPYGSYHQLYRVDGRLVAVGVVDILPTCLSSVYCFYDPDFRALSLGKVTALKETEFVRAASELRPKLRDYYMGFYIHTCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARLSDLL---LPA---SPQLSAMD--IRADTARRATEST------------------LQQKSTGSDKGGARGSRGAGQRQXXXXXXXXXXXXXXXXXXXXX--------SSRKGDDPQDTTEVFPMDLPEDDPKMSWEMQAAAVQA--------------AADAASGLHDIPLLVGNVS--ASFKMLASHYQDVLGDALRMYANFLGPDLTRRIILKL 1071
            QV+VHGD+P+E+T DQFRRFLVDSPL+R        R R+ S  R             G     + E++E TEGRDSLSVPYGSYHQLYR+DG+L+AVGVVD+LP CLSSVYCFYDPD+RAL+LGK+TALKETEF+R AS +RP LRDYYMGFYIHTCPKMSYKG + PSFLLCPERL+WVPLELCRPVL+  +YA LS LL   +PA   S  +S  D  +   T RR + S                     Q+   +D  GARGSR  GQ                               SS +     ++              M     AAA +                AD ASG++DIPL+VG  S   +F  L  H Q ++ D L  Y   +G DL + ++LKL
Sbjct:  494 QVSVHGDEPSEVTPDQFRRFLVDSPLIRETIGGASVRPRNPSFRRGPTGGSPFHVGDCGVEGNADSESSEMTEGRDSLSVPYGSYHQLYRIDGKLIAVGVVDVLPKCLSSVYCFYDPDYRALALGKLTALKETEFIREASVVRPALRDYYMGFYIHTCPKMSYKGSYTPSFLLCPERLTWVPLELCRPVLDVHKYACLSSLLGSPVPAARPSQVISGSDAGVGNGTQRRRSGSMGSVGGGFGSSGRPAAGGRFPQRDA-ADSEGARGSRATGQTSPSSGSFSPLSSLSPDRREVGQGRSRNVYSSSARSIQAGESAATSRFGRETRGEMMGIAAAAAAARRFXXXXXXXXXXXXXXADEASGINDIPLMVGEPSFPVNFSALTPHSQALVRDVLSKYVATVGSDLAKNVVLKL 905
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BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Match: A0A836CDE0_9STRA (Arginine-tRNA-protein transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE0_9STRA)

HSP 1 Score: 217 bits (553), Expect = 3.040e-62
Identity = 114/197 (57.87%), Postives = 138/197 (70.05%), Query Frame = 1 
Query:    1 QVTVHGDDPAEITSDQFRRFLVDSPLVRRART-RSSSAMRTRDXXXXXXXXSRGSYAAPEGEANEETEGRDSLSVPYGSYHQLYRVDGRLVAVGVVDILPTCLSSVYCFYDPDFRALSLGKVTALKETEFVRAASELRPKLRDYYMGFYIHTCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARLSDLL 588
            QV VHGD P E T  QF+RFLVD PLV  ++  R  SA++ +           G  +     A+  TE  D  SVP GSYHQLYR++GRL+AVGVVDILP CLSSVYCFYDP +RALSLGK+TA KE E+V+AAS +RP  + YY+G+YIH+C KM YKG + PS LLCPER  WVPL LC+P+L+   Y RLSDLL
Sbjct:  269 QVAVHGDKPNECTPKQFKRFLVDGPLVHDSQLDRHDSAVQAQ-----------GDDSDANANASAGTE-YDEASVPCGSYHQLYRINGRLIAVGVVDILPRCLSSVYCFYDPAYRALSLGKLTAFKEIEWVQAASAVRPNFQYYYLGYYIHSCEKMRYKGNYNPSDLLCPERREWVPLALCKPLLDRQSYGRLSDLL 453
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BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Match: A0A7S3UVS4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVS4_HETAK)

HSP 1 Score: 184 bits (468), Expect = 5.390e-52
Identity = 104/195 (53.33%), Postives = 125/195 (64.10%), Query Frame = 1 
Query:    1 QVTVHGDDPAEITSDQFRRFLVDSPLVRR-ARTRSSSAMRTRDXXXXXXXXSRGSYAAPEGEANEETEGRDSL-SVPYGSYHQLYRVDGRLVAVGVVDILPTCLSSVYCFYDPDFRALSLGKVTALKETEFVR-AASELRPKLRDYYMGFYIHTCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARL 576
            Q+ VHGD   ++T   F RFLV+SPL  +  +   +   R +D                EG A E     D+L  VP+GSYH LYR DG LVAVGVVD+LP CLSSVY FYDPD+R L LGK+TALKE E+VR AA+  RP LR YY+G+YIH CPKM YKG +APS LLCPE   WVPL   +P+LN  +Y RL
Sbjct:    3 QMRVHGDKEEDVTEKSFTRFLVNSPLFNQNGQNPVAPEAREKDGG-----------GGEEG-AGEPFPVTDALVRVPFGSYHMLYRHDGALVAVGVVDVLPRCLSSVYAFYDPDYRHLVLGKLTALKEIEWVRRAAAAARPGLRFYYLGYYIHDCPKMRYKGEYAPSALLCPETYRWVPLTGAQPLLNERKYCRL 185
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BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Match: A0A672IUF7_SALFA (Arginyl-tRNA--protein transferase 1 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IUF7_SALFA)

HSP 1 Score: 183 bits (465), Expect = 6.370e-50
Identity = 93/193 (48.19%), Postives = 114/193 (59.07%), Query Frame = 1 
Query:    1 QVTVHGDDPAEITSDQFRRFLVDSPLVRRARTRSSSAMRTRDXXXXXXXXSRGSYAAPEGEANEETEGRDSLSVPYGSYHQLYRVDGRLVAVGVVDILPTCLSSVYCFYDPDFRALSLGKVTALKETEFVRAASELRPKLRDYYMGFYIHTCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARLS 579
            Q+ VHGDDP+E    QFRRFL DSPL                                     E     D   + YGS+HQ Y +DGR+VAVGV+DILPTC+SSVY +Y PDF +LSLG  +AL+E  F R   +  PKL  YY+GFYIH+CPKM YKG + PS LLCPE   WVP+E C P L+++RYARL+
Sbjct:  279 QMAVHGDDPSECNESQFRRFLCDSPL-------------------------------------EAESSPDGPEMGYGSFHQQYWLDGRIVAVGVIDILPTCVSSVYLYYHPDFASLSLGSYSALREIAFTRQLQKQSPKLSYYYLGFYIHSCPKMRYKGQYRPSDLLCPETYVWVPIERCTPKLDNSRYARLN 434
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BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Match: A0A672IUF1_SALFA (Arginyl-tRNA--protein transferase 1 n=3 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IUF1_SALFA)

HSP 1 Score: 183 bits (465), Expect = 8.350e-50
Identity = 93/193 (48.19%), Postives = 114/193 (59.07%), Query Frame = 1 
Query:    1 QVTVHGDDPAEITSDQFRRFLVDSPLVRRARTRSSSAMRTRDXXXXXXXXSRGSYAAPEGEANEETEGRDSLSVPYGSYHQLYRVDGRLVAVGVVDILPTCLSSVYCFYDPDFRALSLGKVTALKETEFVRAASELRPKLRDYYMGFYIHTCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARLS 579
            Q+ VHGDDP+E    QFRRFL DSPL                                     E     D   + YGS+HQ Y +DGR+VAVGV+DILPTC+SSVY +Y PDF +LSLG  +AL+E  F R   +  PKL  YY+GFYIH+CPKM YKG + PS LLCPE   WVP+E C P L+++RYARL+
Sbjct:  288 QMAVHGDDPSECNESQFRRFLCDSPL-------------------------------------EAESSPDGPEMGYGSFHQQYWLDGRIVAVGVIDILPTCVSSVYLYYHPDFASLSLGSYSALREIAFTRQLQKQSPKLSYYYLGFYIHSCPKMRYKGQYRPSDLLCPETYVWVPIERCTPKLDNSRYARLN 443
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BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Match: A0A3B4ZGD6_9TELE (Arginyl-tRNA--protein transferase 1 n=5 Tax=Pomacentridae TaxID=30863 RepID=A0A3B4ZGD6_9TELE)

HSP 1 Score: 181 bits (458), Expect = 8.010e-49
Identity = 91/193 (47.15%), Postives = 113/193 (58.55%), Query Frame = 1 
Query:    1 QVTVHGDDPAEITSDQFRRFLVDSPLVRRARTRSSSAMRTRDXXXXXXXXSRGSYAAPEGEANEETEGRDSLSVPYGSYHQLYRVDGRLVAVGVVDILPTCLSSVYCFYDPDFRALSLGKVTALKETEFVRAASELRPKLRDYYMGFYIHTCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARLS 579
            Q+ +HGDDP+E +  +FRRFL DSPL                                     E     D   V YGS+HQ Y +DGR+VAVGV+DILPTC+SSVY +Y PDF +LSLG  +AL+E  F R   +  PKL  YY+GFYIH+CPKM YKG + PS LLCPE   WVP+E C P L ++RYAR +
Sbjct:  284 QMAIHGDDPSECSDSEFRRFLCDSPL-------------------------------------EAEYSPDGPEVGYGSFHQQYWLDGRIVAVGVIDILPTCVSSVYLYYHPDFASLSLGSYSALREIAFTRQLQKQSPKLSYYYLGFYIHSCPKMRYKGQYRPSDLLCPETFVWVPIERCLPQLENSRYARFN 439
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BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Match: A0A665TJQ2_ECHNA (Arginyl-tRNA--protein transferase 1 n=3 Tax=Percomorphaceae TaxID=1489872 RepID=A0A665TJQ2_ECHNA)

HSP 1 Score: 181 bits (458), Expect = 8.800e-49
Identity = 91/193 (47.15%), Postives = 113/193 (58.55%), Query Frame = 1 
Query:    1 QVTVHGDDPAEITSDQFRRFLVDSPLVRRARTRSSSAMRTRDXXXXXXXXSRGSYAAPEGEANEETEGRDSLSVPYGSYHQLYRVDGRLVAVGVVDILPTCLSSVYCFYDPDFRALSLGKVTALKETEFVRAASELRPKLRDYYMGFYIHTCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARLS 579
            Q+ +HGDDP+E +  +F+RFL DSPL                                     E     D   V YGS+HQ Y +DGR+VAVGV+DILPTC+SSVY +Y PDF +LSLG  +AL+E  F R   +  PKL  YY+GFYIH+CPKM YKG + PS LLCPE   WVP+E C P L +TRYAR +
Sbjct:  289 QMAIHGDDPSECSESEFQRFLCDSPL-------------------------------------EAEHSPDGPEVGYGSFHQQYWLDGRIVAVGVIDILPTCVSSVYLYYHPDFASLSLGSYSALREITFTRQLQKQSPKLSYYYLGFYIHSCPKMRYKGQYRPSDLLCPETYVWVPIERCIPQLENTRYARFN 444
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BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Match: A0A8C7YF62_9TELE (Arginyl-tRNA--protein transferase 1 n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7YF62_9TELE)

HSP 1 Score: 179 bits (455), Expect = 1.990e-48
Identity = 91/193 (47.15%), Postives = 114/193 (59.07%), Query Frame = 1 
Query:    1 QVTVHGDDPAEITSDQFRRFLVDSPLVRRARTRSSSAMRTRDXXXXXXXXSRGSYAAPEGEANEETEGRDSLSVPYGSYHQLYRVDGRLVAVGVVDILPTCLSSVYCFYDPDFRALSLGKVTALKETEFVRAASELRPKLRDYYMGFYIHTCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARLS 579
            Q+ VHGDDP+E +  QF+RFL DSPL                                     E     D   V YGS+HQ Y +DG++VAVGV+DILPTC+SSVY +Y PDF ALSLG  +AL+E  F R   +  PKL  YY+GFYIH+CPKM YKG + PS LLCPE  +WVP+E C  +L+ +RYAR +
Sbjct:  279 QMAVHGDDPSECSESQFQRFLCDSPL-------------------------------------EAEFSPDGPEVGYGSFHQQYWLDGKIVAVGVIDILPTCVSSVYLYYHPDFAALSLGSYSALREIAFTRQLQKQSPKLSFYYLGFYIHSCPKMRYKGQYRPSDLLCPETYAWVPIERCTALLDESRYARFN 434
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BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Match: A0A4W6C822_LATCA (Arginyl-tRNA--protein transferase 1 n=5 Tax=Carangaria TaxID=1489904 RepID=A0A4W6C822_LATCA)

HSP 1 Score: 179 bits (454), Expect = 2.820e-48
Identity = 91/193 (47.15%), Postives = 111/193 (57.51%), Query Frame = 1 
Query:    1 QVTVHGDDPAEITSDQFRRFLVDSPLVRRARTRSSSAMRTRDXXXXXXXXSRGSYAAPEGEANEETEGRDSLSVPYGSYHQLYRVDGRLVAVGVVDILPTCLSSVYCFYDPDFRALSLGKVTALKETEFVRAASELRPKLRDYYMGFYIHTCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARLS 579
            Q+ +HGD+P E    QFRRFL DSPL                                     E     D   V YGS+HQ Y +DGR+VAVGV+DILPTC+SSVY +Y PDF +LSLG  +AL+E  F R   +  PKL  YY+GFYIH+CPKM YKG + PS LLCPE   WVP+E C P L ++RYAR +
Sbjct:  280 QMAIHGDEPCECNETQFRRFLCDSPL-------------------------------------EAEHSPDGPEVGYGSFHQQYWLDGRIVAVGVIDILPTCVSSVYLYYHPDFASLSLGSYSALREIAFTRQLQKQSPKLSYYYLGFYIHSCPKMRYKGQYRPSDLLCPETYVWVPIERCLPHLENSRYARFN 435
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BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Match: A0A2D0QND5_ICTPU (arginyl-tRNA--protein transferase 1 isoform X5 n=1 Tax=Ictalurus punctatus TaxID=7998 RepID=A0A2D0QND5_ICTPU)

HSP 1 Score: 177 bits (450), Expect = 3.520e-48
Identity = 93/194 (47.94%), Postives = 115/194 (59.28%), Query Frame = 1 
Query:    1 QVTVHGDDPAEITSDQFRRFLVDSPLVRRARTRSSSAMRTRDXXXXXXXXSRGSYAAPEGEANEETEGRDSLSVPYGSYHQLYRVDGRLVAVGVVDILPTCLSSVYCFYDPDFRALSLGKVTALKETEFVRAASELRPKLRDYYMGFYIHTCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARLSD 582
            Q+ VHGDDP E    QF+RFL DSPL                                  EA    +G D   + YGS+HQ Y +DGR+VAVGV+DILP C+SSVY +YDPDF  LSLG  +AL+E  F R   +  PKL  YY+GFYIH+CPKM YKG + PS LLCPE   WVP+E C P L+++ YARL++
Sbjct:  224 QMAVHGDDPFECDESQFKRFLCDSPL----------------------------------EAETSPDGPD---MGYGSFHQQYWLDGRIVAVGVIDILPNCVSSVYLYYDPDFSFLSLGSYSALREIAFTRQLQKQSPKLSYYYLGFYIHSCPKMRYKGQYQPSDLLCPETYIWVPIEKCVPRLDASVYARLNE 380
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14038.2467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D9_ECTSI1.580e-8645.28Arginyltransferase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A836CDE0_9STRA3.040e-6257.87Arginine-tRNA-protein transferase n=1 Tax=Tribonem... [more]
A0A7S3UVS4_HETAK5.390e-5253.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A672IUF7_SALFA6.370e-5048.19Arginyl-tRNA--protein transferase 1 n=1 Tax=Salari... [more]
A0A672IUF1_SALFA8.350e-5048.19Arginyl-tRNA--protein transferase 1 n=3 Tax=Salari... [more]
A0A3B4ZGD6_9TELE8.010e-4947.15Arginyl-tRNA--protein transferase 1 n=5 Tax=Pomace... [more]
A0A665TJQ2_ECHNA8.800e-4947.15Arginyl-tRNA--protein transferase 1 n=3 Tax=Percom... [more]
A0A8C7YF62_9TELE1.990e-4847.15Arginyl-tRNA--protein transferase 1 n=1 Tax=Oryzia... [more]
A0A4W6C822_LATCA2.820e-4847.15Arginyl-tRNA--protein transferase 1 n=5 Tax=Carang... [more]
A0A2D0QND5_ICTPU3.520e-4847.94arginyl-tRNA--protein transferase 1 isoform X5 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14038contigH-paniculata_contig14038:149..3653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.6
Seed ortholog evalue1.6e-77
Seed eggNOG ortholog2880.D7G6D9
Preferred nameate-1
KEGG rclassRC00055,RC00064
KEGG koko:K00685
KEGG ReactionR03862
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009894,GO:0009987,GO:0010029,GO:0010033,GO:0010150,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019216,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0032501,GO:0032502,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0048366,GO:0048367,GO:0048580,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0050994,GO:0051239,GO:0051603,GO:0051704,GO:0051707,GO:0065007,GO:0071704,GO:0080090,GO:0090693,GO:0097305,GO:0098542,GO:0099402,GO:0140096,GO:1900140,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:2000026
EggNOG free text desc.arginyltransferase activity
EggNOG OGsCOG2935@1,KOG1193@2759
EC2.3.2.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons4
Model size1077
Cds size1077
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14038.2467.1prot_H-paniculata_contig14038.2467.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14038 149..3653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929116.1345556-CDS-H-paniculata_contig14038:148..3131622929116.1345556-CDS-H-paniculata_contig14038:148..313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14038 149..313 +
1691480737.6981502-CDS-H-paniculata_contig14038:148..3131691480737.6981502-CDS-H-paniculata_contig14038:148..313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14038 149..313 +
1622929116.1508498-CDS-H-paniculata_contig14038:1436..15771622929116.1508498-CDS-H-paniculata_contig14038:1436..1577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14038 1437..1577 +
1691480737.7192085-CDS-H-paniculata_contig14038:1436..15771691480737.7192085-CDS-H-paniculata_contig14038:1436..1577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14038 1437..1577 +
1622929116.1670575-CDS-H-paniculata_contig14038:2234..23241622929116.1670575-CDS-H-paniculata_contig14038:2234..2324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14038 2235..2324 +
1691480737.729113-CDS-H-paniculata_contig14038:2234..23241691480737.729113-CDS-H-paniculata_contig14038:2234..2324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14038 2235..2324 +
1622929116.1962495-CDS-H-paniculata_contig14038:2972..36531622929116.1962495-CDS-H-paniculata_contig14038:2972..3653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14038 2973..3653 +
1691480737.7385633-CDS-H-paniculata_contig14038:2972..36531691480737.7385633-CDS-H-paniculata_contig14038:2972..3653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14038 2973..3653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14038.2467.1

>prot_H-paniculata_contig14038.2467.1 ID=prot_H-paniculata_contig14038.2467.1|Name=mRNA_H-paniculata_contig14038.2467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=359bp
QVTVHGDDPAEITSDQFRRFLVDSPLVRRARTRSSSAMRTRDGGGGGGGG
SRGSYAAPEGEANEETEGRDSLSVPYGSYHQLYRVDGRLVAVGVVDILPT
CLSSVYCFYDPDFRALSLGKVTALKETEFVRAASELRPKLRDYYMGFYIH
TCPKMSYKGCFAPSFLLCPERLSWVPLELCRPVLNSTRYARLSDLLLPAS
PQLSAMDIRADTARRATESTLQQKSTGSDKGGARGSRGAGQRQSSLSSTS
SLPSSKSPVPPSAPSSRKGDDPQDTTEVFPMDLPEDDPKMSWEMQAAAVQ
AAADAASGLHDIPLLVGNVSASFKMLASHYQDVLGDALRMYANFLGPDLT
RRIILKLQ*
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mRNA from alignment at H-paniculata_contig14038:149..3653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14038.2467.1 ID=mRNA_H-paniculata_contig14038.2467.1|Name=mRNA_H-paniculata_contig14038.2467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3505bp|location=Sequence derived from alignment at H-paniculata_contig14038:149..3653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTACTGTGCACGGAGACGACCCGGCGGAGATTACATCCGACCAGTT
CCGGCGATTTTTGGTGGACTCTCCACTAGTCCGGCGAGCCCGTACTAGAT
CTTCTAGCGCTATGCGCACACGGGATGGCGGCGGTGGCGGCGGCGGCGGT
AGTCGGGGTTCGTATGTACGAGGGGAGTTGAGCTCGGGGGAAGCGATGGA
GGTGAGAGAAATGACATTGTACAGGCCTACAAATCTCGCACCCAGACAAG
TACGAGTACGAATTGGTTTGATCATTATTTGCGACGAAAATAATAATAAA
TTAATTAACAAATCTGCCCGAGTTTCGGAACTTGCGGGGCACGTGAAAAT
ATGTATTGCTCGGAGTAGCCAGTCGTGAATTGGCGTTGGCGGCCACACCG
ACTAAGTAGACATGCTCATGCTGAAGCTTGAGGTTGCAAATGTTCGATGT
GTTTGTCAAGGTCCGAAAGGTGAAGTCTTGCCAAATAGTTCTGGTTGTTG
AGCTTTTTGTGATGCAGTTGTGGTGCCGTGGTTTTCCGTCTCGAGACATT
TTCCTTGCTTGATTCGAGACTTTCGTGCTCCTTTCTTGTTGCGTATCCCG
AACTAGCAAGCGTCGTCCGCGGGTCATGTTAGGTTGTACACAGACGGTGC
GTTAAAAAGACGCCGACTGCACGCTCGTAGTCGTCGTGGCGAACTAGTTA
GTAGTGCTAGGTTAGTCAGCGTGTTTCTGGTATTTTGATGTTGGACTCTG
GGTGCGTGGACAGCAACCTGAGGCTCGGCACTGTAGATGATCTTTTAAAG
TTCCGAGCGGCCACCTTCCCTGCTGAGTTGTTCAGGCTGATCATCTCGGT
GCGTGCAGAAGGTCGTGTCGTGGTATCGTGTGTTTTTGTGTGCTACATGA
TTAAACCAGGCATTTGTTGTGTGTCTGTTTCTTTTGAGGAATGACAAGGT
GTAAACGTGTGGAGTACCTCACCATGTGCCCCTATACCGGAGTGGGTCAA
AGATGCACAATGGGAATAATGATTAACTAGTAGTAAAGCCACGCGGTTCA
TGCTTGTCCTCGACCCACGACTCGCTATGCTCGCGGTGGCTCGTTCTGCT
CGTGTGAAGAGTTATTTGGAGCATACAGAATTGAGAAGCTGTTCTGGAGC
GGCAATCATATTACACCATGATGTACTTACCAAACAAAAGTGATATGAAA
GTGTTGCGTTCCTGTTCCATGGCGGTCGGCTGTTTTTGCGTGTTGTTTCT
TCCAATCCTCTCGGCGTGCTTGGTTGTTCGTTTGTCAGGCCGCGCCCGAG
GGTGAGGCTAATGAGGAAACGGAGGGCCGGGACAGCTTGTCCGTGCCGTA
TGGGAGCTATCACCAACTGTACCGCGTCGATGGACGACTTGTTGCTGTAG
GGGTGGTAGACATTTTGCCCACGTGTCTGGTGAGTATCAGCGAGACATAG
TTGGATGATGAAGAAAAATGATAAGCACTATTTAGCTTGAGCGATGTGGA
ATCTCTGGACGTGTCGACGGGTTCGAACCCATTCGCCTTGGGTATCAATT
CGGTTGCGAAAATACTCGGGTCATGCAACACAGATGGATCTCTGATGTCA
TACAAAAAGCGTTTGTGACAGTAGTGTATGCCGCGGAGGAAGGCAAAAGT
CAATGGAAATGAAAGTCCTGGCGGATTTTGGAATATGGCTATGAAACAAC
ACGAGAATACTTGGTGCTTTCCAAATCCCGTTTGAATCGACAGATGGCTA
CCTGGAAATGAAGTTACTTCATTCATGCCTTCGTGGAGTGTTGGATTGAT
GCCTTCAAGTACGAGCGCACGTCGGCACATTTTTCCACTTTTGAGCATGA
AAGTTGAGTAAAGTTTCAAGGTTCCATGGCAGATGTTTCTACTCAAAAAT
AAATCCTCAAACCGAGCTGTGAAGTAGCGGAAACTTCTGAGGTGGCACTA
CCTCTCAAACCTCTGTTCCACCTGCTGCAAAATTGTATAAATTTGTAATT
GCGCCGCACCATACATCTAATTTGTATATATATTTTCATTTCGTTATTTC
CTTGTTCATCTCTGAATTGGGCGCGACGATTTATAGTCGTCAGTGTACTG
CTTCTACGATCCAGACTTCCGGGCACTTTCGCTCGGAAAAGTGACTGCCC
TTAAGGAGACGGAGTTTGTCAGAGCGGTGAGAAATTGGGAATATCAAGGC
AATACATTTGGTGCCTACTTGAGGCAGTCGATCGGTGTCATAATCCTCGG
GTGTTGAGATTTTGAGATCCGGCAGTGGCAAGCGTGCTGTAATGGATGTT
CACTACGTTTGATTATTCGTTCCGTATCTGGAAATTACTTTAAACTGTGG
TGCTTGGACCCACTTGGTACCTTTGTAACATTGTCTTGATATTGTCCGCA
TTTTTGGCTCGTCGAGAGTGAGAAAATTCCACACAAAAAAAAAAAACGTG
TGCCGTGATGCCTACCACTTTGGGAATCGTGGAGTAATGTTTAAACATGC
TTTCATTTTTTCGAGCGAGGCTCGCTCAGCCTTTTCCCCTAGGAGCATCG
TCATTGCAGCTGGGTGAGGGGCTGCTTACTCTTCATCTCGAATACACGAG
TCGAGTATGTCTAGTGCCATAGTGCGTCGTTGCCCCCACCAAAAGAACCT
TGGGAATGTCGCGGCGTCGTTCTCACATGTATGCTTTTGATGCGTTGATC
TAATCACACTGCTTTCCCGCTACCGATTTTGTCGTTTTGAGATGTACTTC
TCTCGGCTCACTGGCTCCATCTTATTTCTTCCCTCGCGAAATGCACTCTA
CATTACTCATTACACGATAAACAGGCGAGCGAGCTCCGACCCAAGTTACG
GGATTATTATATGGGCTTCTACATTCATACATGCCCCAAGATGTCCTACA
AGGGCTGTTTCGCTCCATCCTTTCTTCTGTGCCCGGAGCGCTTATCCTGG
GTCCCCCTCGAGCTGTGCCGCCCGGTCCTGAATAGCACGAGATATGCTCG
TCTCTCAGACCTGCTACTGCCCGCCTCGCCACAGCTGTCAGCCATGGACA
TACGTGCAGACACAGCGCGGCGAGCGACCGAAAGCACTTTGCAGCAAAAG
AGCACTGGTAGCGACAAAGGTGGTGCAAGGGGATCACGTGGTGCAGGACA
GCGTCAATCTTCCTTGTCGTCCACGTCCTCTTTGCCATCATCGAAGTCGC
CGGTTCCACCGTCCGCGCCATCATCCAGGAAAGGCGATGATCCCCAAGAT
ACTACTGAAGTGTTTCCGATGGACTTGCCTGAAGATGACCCGAAAATGAG
TTGGGAGATGCAGGCGGCTGCTGTTCAGGCGGCGGCGGACGCGGCGTCCG
GATTGCATGATATTCCTCTGCTGGTGGGGAATGTGTCGGCTTCGTTCAAG
ATGCTGGCGTCGCATTATCAGGACGTGCTGGGGGATGCGCTGCGGATGTA
TGCCAACTTCTTGGGCCCAGACCTGACACGAAGAATCATACTCAAGTTAC
AGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14038:149..3653+

>mRNA_H-paniculata_contig14038.2467.1 ID=mRNA_H-paniculata_contig14038.2467.1|Name=mRNA_H-paniculata_contig14038.2467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2154bp|location=Sequence derived from alignment at H-paniculata_contig14038:149..3653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTACTGTGCACGGAGACGACCCGGCGGAGATTACATCCGACCAGTT
CCGGCGATTTTTGGTGGACTCTCCACTAGTCCGGCGAGCCCGTACTAGAT
CTTCTAGCGCTATGCGCACACGGGATGGCGGCGGTGGCGGCGGCGGCGGT
AGTCGGGGTTCGTATCAGGTTACTGTGCACGGAGACGACCCGGCGGAGAT
TACATCCGACCAGTTCCGGCGATTTTTGGTGGACTCTCCACTAGTCCGGC
GAGCCCGTACTAGATCTTCTAGCGCTATGCGCACACGGGATGGCGGCGGT
GGCGGCGGCGGCGGTAGTCGGGGTTCGTATGCCGCGCCCGAGGGTGAGGC
TAATGAGGAAACGGAGGGCCGGGACAGCTTGTCCGTGCCGTATGGGAGCT
ATCACCAACTGTACCGCGTCGATGGACGACTTGTTGCTGTAGGGGTGGTA
GACATTTTGCCCACGTGTCTGGCCGCGCCCGAGGGTGAGGCTAATGAGGA
AACGGAGGGCCGGGACAGCTTGTCCGTGCCGTATGGGAGCTATCACCAAC
TGTACCGCGTCGATGGACGACTTGTTGCTGTAGGGGTGGTAGACATTTTG
CCCACGTGTCTGTCGTCAGTGTACTGCTTCTACGATCCAGACTTCCGGGC
ACTTTCGCTCGGAAAAGTGACTGCCCTTAAGGAGACGGAGTTTGTCAGAG
CGTCGTCAGTGTACTGCTTCTACGATCCAGACTTCCGGGCACTTTCGCTC
GGAAAAGTGACTGCCCTTAAGGAGACGGAGTTTGTCAGAGCGGCGAGCGA
GCTCCGACCCAAGTTACGGGATTATTATATGGGCTTCTACATTCATACAT
GCCCCAAGATGTCCTACAAGGGCTGTTTCGCTCCATCCTTTCTTCTGTGC
CCGGAGCGCTTATCCTGGGTCCCCCTCGAGCTGTGCCGCCCGGTCCTGAA
TAGCACGAGATATGCTCGTCTCTCAGACCTGCTACTGCCCGCCTCGCCAC
AGCTGTCAGCCATGGACATACGTGCAGACACAGCGCGGCGAGCGACCGAA
AGCACTTTGCAGCAAAAGAGCACTGGTAGCGACAAAGGTGGTGCAAGGGG
ATCACGTGGTGCAGGACAGCGTCAATCTTCCTTGTCGTCCACGTCCTCTT
TGCCATCATCGAAGTCGCCGGTTCCACCGTCCGCGCCATCATCCAGGAAA
GGCGATGATCCCCAAGATACTACTGAAGTGTTTCCGATGGACTTGCCTGA
AGATGACCCGAAAATGAGTTGGGAGATGCAGGCGGCTGCTGTTCAGGCGG
CGGCGGACGCGGCGTCCGGATTGCATGATATTCCTCTGCTGGTGGGGAAT
GTGTCGGCTTCGTTCAAGATGCTGGCGTCGCATTATCAGGACGTGCTGGG
GGATGCGCTGCGGATGTATGCCAACTTCTTGGGCCCAGACCTGACACGAA
GAATCATACTCAAGTTACAGTGAGCGAGCGAGCTCCGACCCAAGTTACGG
GATTATTATATGGGCTTCTACATTCATACATGCCCCAAGATGTCCTACAA
GGGCTGTTTCGCTCCATCCTTTCTTCTGTGCCCGGAGCGCTTATCCTGGG
TCCCCCTCGAGCTGTGCCGCCCGGTCCTGAATAGCACGAGATATGCTCGT
CTCTCAGACCTGCTACTGCCCGCCTCGCCACAGCTGTCAGCCATGGACAT
ACGTGCAGACACAGCGCGGCGAGCGACCGAAAGCACTTTGCAGCAAAAGA
GCACTGGTAGCGACAAAGGTGGTGCAAGGGGATCACGTGGTGCAGGACAG
CGTCAATCTTCCTTGTCGTCCACGTCCTCTTTGCCATCATCGAAGTCGCC
GGTTCCACCGTCCGCGCCATCATCCAGGAAAGGCGATGATCCCCAAGATA
CTACTGAAGTGTTTCCGATGGACTTGCCTGAAGATGACCCGAAAATGAGT
TGGGAGATGCAGGCGGCTGCTGTTCAGGCGGCGGCGGACGCGGCGTCCGG
ATTGCATGATATTCCTCTGCTGGTGGGGAATGTGTCGGCTTCGTTCAAGA
TGCTGGCGTCGCATTATCAGGACGTGCTGGGGGATGCGCTGCGGATGTAT
GCCAACTTCTTGGGCCCAGACCTGACACGAAGAATCATACTCAAGTTACA
GTGA
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