mRNA_H-paniculata_contig1403.2465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1403.2465.1
Unique NamemRNA_H-paniculata_contig1403.2465.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Match: A0A6H5LBB4_9PHAE (TsaA-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBB4_9PHAE)

HSP 1 Score: 633 bits (1633), Expect = 2.160e-215
Identity = 334/551 (60.62%), Postives = 403/551 (73.14%), Query Frame = 3 
Query:  696 RERKKRLCPKDLALDAFTKVARSHISCIGAGDYQSLLLLPRATFIQFGCFVPYASCRDSLVNLGQARTATASVDHLRILYVSCSWASTGDVQGSE---DDFKTVRALLERSPDLAYVYVGRSCV--ASDKRQDVRAAQLRHVPLVLLRADTTLVLPRPTTS--NDEEKRGISRPHSDINLHMRGAWSRMELAVGAVGQSKVLVVFRAPPFPETIWELKPGLTDVKEVAMKVVDAKETAAPGATNISSPPTTSRGSDENSEGKAVAAAAMKAACDAWLSSELNPLASLERARLAVAAAEDLAGAGLLHAIREMRPTPHSDVTEDLRKSLGEEHMAGETELAMSLLMFTVFCTQPKKRATYTDGFLEDTGKMEVVYRPIAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHGYEEALQDVSGFEMIWVISHMHLNKGWNRQVRPPRLPEERKGLFSTRSPHRPNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDVKAGWLDALESDHEDQGDFLQKFSVGAALVHTANG 2327
            R RKK+L P+ LALDA+T+VARS+I  IG GDY+SLLLLPR  FI  G FVPYA CRD LV+LGQAR ATA V+ LR+LYVSCSWAS G  +G+     DF+T RA L+R+PDL++VYVGRSCV  +S     VR+ QLRHV   LLR+D  LVLPR   S   +E        ++D     RG+ SRM LA+ AVGQ+KV V FRA  +PE++ EL+ G ++V+  A + VDA   AA      S+                  AA ++ AC+ WL ++LNPL++LE+AR  V  A+       L  I+ MRP P      + R +LG+E +  E ELA+S+L+F V C+Q K+RATYT+ F+ED GKME+ Y P+AVVRSPY+ERFGTPRQPQVTA+V HGGAQEG+IVFL+G GYEEALQD+SGF+MIWV++HMHLNKGWN +VRPPRLPEERKGLFSTRSPHRPNA+ALSSLRVGRVD A GVIYVHGLDLLDGTPVLD+KPYIGYCDAFP+VKAGWLDAL SDHE QGDFL KFSVGA LVHT  G
Sbjct:   88 RSRKKKLAPRCLALDAWTRVARSYIKSIGEGDYESLLLLPRECFIVAGRFVPYAECRDQLVSLGQARAATAGVEQLRVLYVSCSWASAGGGEGTGWAVQDFETTRAYLQRNPDLSFVYVGRSCVVGSSSSTGHVRSTQLRHVAPALLRSDAVLVLPRLAKSPGGEEGSGSTGTRYTDFECSARGSRSRMVLAIAAVGQAKVFVAFRAGSYPESVVELELGKSNVRATAKQAVDALRAAAAKRPQKST------------------AAVVEEACENWLGADLNPLSALEQARAVVEEAQRSDDGEALENIQSMRPAP--SFAANARAALGDEFIGEERELALSMLLFAVLCSQRKERATYTENFVEDVGKMEISYCPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHERQGDFLPKFSVGATLVHTDAG 618
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BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Match: A0A835YNQ9_9STRA (TsaA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ9_9STRA)

HSP 1 Score: 211 bits (537), Expect = 5.500e-60
Identity = 96/159 (60.38%), Postives = 122/159 (76.73%), Query Frame = 3 
Query: 1788 VVYRPIAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHGYEEALQDVSGFEMIWVISHMHLNKGWNRQVRPPRLPEERKGLFSTRSPHRPNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDVKAGWLDALESDHE 2264
            +V   I VVRSPYKERFGTPRQ  VTA V  G AQ G++VF +G  +E AL+D+ GF+ +WVIS+MHLN+GWN +V+PPR P  ++GLFSTRSPHRPN++ALS++++  VDP    + V GLDLLDGTP+LD+KPY+ YCDAFP  K GWL+ L S  E
Sbjct:    1 MVMDTIGVVRSPYKERFGTPRQANVTAGVLEGKAQHGQLVFSRGRNFEVALEDLDGFDYVWVISYMHLNQGWNPKVKPPRGPRVKRGLFSTRSPHRPNSIALSAVKIVSVDPKGLTVTVEGLDLLDGTPILDIKPYVPYCDAFPGAKTGWLEELSSIDE 159
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BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Match: A0A7S3XP01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP01_HETAK)

HSP 1 Score: 196 bits (497), Expect = 2.420e-53
Identity = 98/174 (56.32%), Postives = 121/174 (69.54%), Query Frame = 3 
Query: 1734 KKRATYTDGFLEDTGKMEVVYRPIAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHGYEEALQDVSGFEMIWVISHMHLNKGWNRQVRPPRLPEERK-GLFSTRSPHRPNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDVKAGWLDALE 2252
            K +  YT+ F   T    V    IAVVRSPYKERFGTPRQP VT     G AQ G IVF K   +E ALQD+ GFE  W+I++ HLNKGWN +V+PPR   + K GLF+TRSPHRPN + LS+ ++  VD  +GV+ V GLDLLDGTPVLD+KPY+ Y DAFP  +AGWL++ +
Sbjct:   55 KPQQFYTEQF---TTPESVSMETIAVVRSPYKERFGTPRQPVVTKGTLGGSAQIGEIVFKKNRNFEIALQDLEGFEYCWLITYFHLNKGWNPKVKPPRGKHDAKLGLFATRSPHRPNPIGLSACKIHSVDHRQGVVRVAGLDLLDGTPVLDLKPYVPYADAFPHARAGWLNSSD 225
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BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Match: A0A0G4F040_VITBC (TsaA-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F040_VITBC)

HSP 1 Score: 192 bits (487), Expect = 9.800e-52
Identity = 94/171 (54.97%), Postives = 119/171 (69.59%), Query Frame = 3 
Query: 1761 FLEDTGKMEVV-YRPIAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHGYEEALQDVSGFEMIWVISHMHLNKGWNRQVR--PPRLPEERKGLFSTRSPHRPNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDVKAGWLDALESDHE 2264
            + ED    E +   PI VVRSPYKERFGTPRQP VT     G  Q   +  L+GHGYE  L+DV GFE +W+I++MHLN+GW  +VR  P +LP  R GLF+TR+PHRPN +ALS++ V  VD   G +++ GLDLLDGTPVLD+KPY+ Y DAFPD  AGWLD  + + +
Sbjct:   77 YAEDADVPEAIEMHPIGVVRSPYKERFGTPRQPVVTEGTLGGVKQNATVQLLRGHGYEACLEDVEGFERVWLITYMHLNQGWRSKVRVYPRKLPR-RLGLFATRAPHRPNQLALSAVEVVGVDVDAGQLHILGLDLLDGTPVLDIKPYVPYADAFPDSAAGWLDQYDREQQ 246
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BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Match: A0A7S1WEL1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WEL1_ALECA)

HSP 1 Score: 189 bits (480), Expect = 2.110e-51
Identity = 89/174 (51.15%), Postives = 122/174 (70.11%), Query Frame = 3 
Query: 1749 YTDGFLEDTGKMEVVYRPIAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHGYEEAL--QDVSGFEMIWVISHMHLNKGWNRQVRPPRLPEERKGLFSTRSPHRPNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDVKAGWLDALESDHE 2264
            +TD F      ++V  R I VVRSPYKERFG PRQP ++  V  G AQEG I FL     + AL  +D+ GFE IW++ ++HLN+GW+ +V PPR   +++GLF+TRSPHRPN ++LS+ ++  VD     + V GLDLLDGTPVLDVKPY+ YCD++P  +AGW+D +E +H+
Sbjct:   31 HTDAF---PTPLQVTLRTIGVVRSPYKERFGCPRQPPISKGVLGGSAQEGTIQFLDNPDGDIALALKDLEGFERIWIVGYLHLNEGWSPRVTPPRGARQKRGLFATRSPHRPNHISLSACQLLSVDAKAKTLTVRGLDLLDGTPVLDVKPYVPYCDSYPSARAGWIDEVEGEHD 201
[Close]
BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Match: A0A6N6JQK0_9BACT (tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO n=3 Tax=Bacteria TaxID=2 RepID=A0A6N6JQK0_9BACT)

HSP 1 Score: 186 bits (472), Expect = 8.370e-51
Identity = 90/156 (57.69%), Postives = 113/156 (72.44%), Query Frame = 3 
Query: 1803 IAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHGYEEALQDVSGFEMIWVISHMHLNKGWNRQVRPPRLPEERKGLFSTRSPHRPNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDVKAGWLDALESDHEDQ 2270
            I  VRSPYKERFGTPRQP VTA      A + RI  L    +E+ALQD+ GFE IWV++ +HLN GWN QV PPR P+ ++GLF+TR+PHRPN + LS+LR+ RV+    V++V G+DLLDGTPVLDVKPY+ Y DAF   +AGWL+ L  D  D+
Sbjct:   25 IGHVRSPYKERFGTPRQPVVTAQTLEDRALDARIELLPAMNFEQALQDLEGFEYIWVLAWLHLNSGWNPQVMPPRGPKVKRGLFATRAPHRPNPIGLSALRLIRVEGR--VLHVRGIDLLDGTPVLDVKPYVPYSDAFAAARAGWLEGLAQDEGDR 178
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BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Match: UPI001AD54E4C (tRNA (Adenine(37)-N6)-methyltransferase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001AD54E4C)

HSP 1 Score: 186 bits (471), Expect = 1.150e-50
Identity = 87/156 (55.77%), Postives = 114/156 (73.08%), Query Frame = 3 
Query: 1803 IAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHGYEEALQDVSGFEMIWVISHMHLNKGWNRQVRPPRLPEERKGLFSTRSPHRPNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDVKAGWLDALESDHEDQ 2270
            I  V SPYKERFGTPRQP VT       AQE  I  + G  +E+AL+D+ GFE IWV++ +HLN+GWN QV PPR P+ ++GLF+TR+PHRPN++ LS+L++  +D     + V G+DLLDGTPVLD+KPYI Y DAFP  +AGWL+ L+SD  D+
Sbjct:   25 IGYVHSPYKERFGTPRQPPVTEQTLDDRAQEAMIELVPGRNFEQALKDLEGFEYIWVLAWLHLNEGWNPQVIPPRGPKVKRGLFATRAPHRPNSIGLSALKLVGIDGR--TLKVSGIDLLDGTPVLDIKPYIPYSDAFPKARAGWLEGLKSDEPDR 178
[Close]
BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Match: R1DL83_EMIHU (TsaA-like domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DL83_EMIHU)

HSP 1 Score: 187 bits (474), Expect = 1.490e-49
Identity = 94/176 (53.41%), Postives = 116/176 (65.91%), Query Frame = 3 
Query: 1749 YTDGFLEDTGKMEVVYRPIAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHGYEEALQDVSGFEMIWVISHMHLNKGWNRQVRPPRLPEERK-GLFSTRSPHRPNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDVKAGWLDALESDHEDQG 2273
            YTD F  D     V   PI V+RSPYKERFGTPRQP VT  V  GGAQ G I      G +  L+ ++GF+  W I+ MHLN GW   VRPPR P   K G+F+TR+PHRPN +ALS+L+V  VD A   + V GLDLLDGTPVLD+KPY+ Y D+FP  KAGW+D + ++ +  G
Sbjct:   32 YTDAFA-DHAAAPVTLTPIGVIRSPYKERFGTPRQPTVTTQVSGGGAQRGCIELRPDAGLDHTLRGLAGFDYCWAITLMHLNAGWKPLVRPPRGPRRAKQGVFATRAPHRPNPIALSALKVVEVDEAALRVTVEGLDLLDGTPVLDLKPYVPYADSFPRAKAGWVDEVRAEEDRLG 206
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BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Match: A0A7S2IIV7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IIV7_9EUKA)

HSP 1 Score: 184 bits (467), Expect = 2.140e-49
Identity = 86/167 (51.50%), Postives = 118/167 (70.66%), Query Frame = 3 
Query: 1749 YTDGFLEDTGKMEVVYRPIAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHGYEEALQDVSGFEMIWVISHMHLNKGWNRQVRPPRLPEERKGLFSTRSPHRPNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDVKAGWLDAL 2249
            YT+ F E +  ++V   PI  V SPYKERFGTPRQP V+A    G   +G +V        +AL D+ GF  +W++S++HLN+GW  +V+PPR P++R+GLF+TR+PHRPN + +S++ +  VD   G ++V GLDLLD TPVLD+KPYI YCD+ PD KAGW+DAL
Sbjct:   66 YTEAFRE-SAHLDVNLSPIGFVESPYKERFGTPRQPVVSALTAGGAMLDGCVVLRPD--LADALVDLEGFSHMWIVSYLHLNRGWKLRVKPPRGPKQRRGLFATRAPHRPNQLGMSAVEITAVDHIGGRVHVRGLDLLDHTPVLDLKPYIPYCDSIPDAKAGWVDAL 229
[Close]
BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Match: A0A2V3J262_9FLOR (tRNA (Adenine(37)-N6)-methyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J262_9FLOR)

HSP 1 Score: 183 bits (464), Expect = 1.820e-48
Identity = 97/199 (48.74%), Postives = 124/199 (62.31%), Query Frame = 3 
Query: 1749 YTDGFLEDTGKMEVVYRPIAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHGYEEALQDVSGFEMIWVISHMHLNKGWNRQVRPPRLPEERKGLFSTRSPHRPNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDVKAGWLDALESDHEDQGDFLQKFSVGAALVHTANGDNSYNS 2345
            YTD F   T   +V    I VVRS YKERFGTPRQP VT        Q   I   +   Y+ AL+ ++ FE  WVIS+ HLN+G+N  V PPR P +++G+F+TRSPHRPN++ LS +R+  VD  +G+I+V G+DLLDGTPVLDVKPY+ YCD+FP  KAGWLD L  D +   D L  +   A L       N+  S
Sbjct:   55 YTDDFETPT---QVSLNTIGVVRSLYKERFGTPRQPNVTKNTLGNQMQPATIQLYESCKYDLALRGLAQFEYCWVISYFHLNQGFNPLVTPPRGPRKKQGVFATRSPHRPNSIGLSCIRITGVDEKKGLIHVLGVDLLDGTPVLDVKPYVPYCDSFPKAKAGWLDTLREDMK-APDVLGYYPPPAHLTRQFGSSNNNES 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1403.2465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBB4_9PHAE2.160e-21560.62TsaA-like domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YNQ9_9STRA5.500e-6060.38TsaA-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3XP01_HETAK2.420e-5356.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4F040_VITBC9.800e-5254.97TsaA-like domain-containing protein n=2 Tax=Vitrel... [more]
A0A7S1WEL1_ALECA2.110e-5151.15Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6N6JQK0_9BACT8.370e-5157.69tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyl... [more]
UPI001AD54E4C1.150e-5055.77tRNA (Adenine(37)-N6)-methyltransferase n=2 Tax=Pl... [more]
R1DL83_EMIHU1.490e-4953.41TsaA-like domain-containing protein n=1 Tax=Emilia... [more]
A0A7S2IIV7_9EUKA2.140e-4951.50Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A2V3J262_9FLOR1.820e-4848.74tRNA (Adenine(37)-N6)-methyltransferase n=1 Tax=Gr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1403contigH-paniculata_contig1403:20664..24302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score652.1
Seed ortholog evalue2.7e-184
Seed eggNOG ortholog2880.D7FI01
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.tRNA (adenine-N6-)-methyltransferase activity
EggNOG OGsCOG1720@1,KOG2942@2759
Ec32 ortholog descriptionTsaA-like domain
Ec32 orthologEc-12_006540.1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2653
Cds size1947
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1403.2465.1prot_H-paniculata_contig1403.2465.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1403 20945..23877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929115.791682-UTR-H-paniculata_contig1403:20663..209441622929115.791682-UTR-H-paniculata_contig1403:20663..20944Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1403 20664..20944 -
1691480737.5964248-UTR-H-paniculata_contig1403:20663..209441691480737.5964248-UTR-H-paniculata_contig1403:20663..20944Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1403 20664..20944 -
1622929115.9705553-UTR-H-paniculata_contig1403:23877..243021622929115.9705553-UTR-H-paniculata_contig1403:23877..24302Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1403 23878..24302 -
1691480737.6435819-UTR-H-paniculata_contig1403:23877..243021691480737.6435819-UTR-H-paniculata_contig1403:23877..24302Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1403 23878..24302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929115.9082158-CDS-H-paniculata_contig1403:20944..211161622929115.9082158-CDS-H-paniculata_contig1403:20944..21116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1403 20945..21116 -
1691480737.6086383-CDS-H-paniculata_contig1403:20944..211161691480737.6086383-CDS-H-paniculata_contig1403:20944..21116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1403 20945..21116 -
1622929115.9241593-CDS-H-paniculata_contig1403:21428..214621622929115.9241593-CDS-H-paniculata_contig1403:21428..21462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1403 21429..21462 -
1691480737.61701-CDS-H-paniculata_contig1403:21428..214621691480737.61701-CDS-H-paniculata_contig1403:21428..21462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1403 21429..21462 -
1622929115.941106-CDS-H-paniculata_contig1403:21787..220241622929115.941106-CDS-H-paniculata_contig1403:21787..22024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1403 21788..22024 -
1691480737.626037-CDS-H-paniculata_contig1403:21787..220241691480737.626037-CDS-H-paniculata_contig1403:21787..22024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1403 21788..22024 -
1622929115.9572933-CDS-H-paniculata_contig1403:22373..238771622929115.9572933-CDS-H-paniculata_contig1403:22373..23877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1403 22374..23877 -
1691480737.6347346-CDS-H-paniculata_contig1403:22373..238771691480737.6347346-CDS-H-paniculata_contig1403:22373..23877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1403 22374..23877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1403.2465.1

>prot_H-paniculata_contig1403.2465.1 ID=prot_H-paniculata_contig1403.2465.1|Name=mRNA_H-paniculata_contig1403.2465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=649bp
MIRMDHVYALSLAFMSGFMLGSLTIWRRQGPQQVTRRQSSRGSKRKSDVG
KNVESSSASGAPVSPPGDAGGHQHDGGGHQQTMKGSRRSKRERKKRLCPK
DLALDAFTKVARSHISCIGAGDYQSLLLLPRATFIQFGCFVPYASCRDSL
VNLGQARTATASVDHLRILYVSCSWASTGDVQGSEDDFKTVRALLERSPD
LAYVYVGRSCVASDKRQDVRAAQLRHVPLVLLRADTTLVLPRPTTSNDEE
KRGISRPHSDINLHMRGAWSRMELAVGAVGQSKVLVVFRAPPFPETIWEL
KPGLTDVKEVAMKVVDAKETAAPGATNISSPPTTSRGSDENSEGKAVAAA
AMKAACDAWLSSELNPLASLERARLAVAAAEDLAGAGLLHAIREMRPTPH
SDVTEDLRKSLGEEHMAGETELAMSLLMFTVFCTQPKKRATYTDGFLEDT
GKMEVVYRPIAVVRSPYKERFGTPRQPQVTAAVRHGGAQEGRIVFLKGHG
YEEALQDVSGFEMIWVISHMHLNKGWNRQVRPPRLPEERKGLFSTRSPHR
PNAVALSSLRVGRVDPAEGVIYVHGLDLLDGTPVLDVKPYIGYCDAFPDV
KAGWLDALESDHEDQGDFLQKFSVGAALVHTANGDNSYNSSVVGKEAT*
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mRNA from alignment at H-paniculata_contig1403:20664..24302-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1403.2465.1 ID=mRNA_H-paniculata_contig1403.2465.1|Name=mRNA_H-paniculata_contig1403.2465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3639bp|location=Sequence derived from alignment at H-paniculata_contig1403:20664..24302- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCTTGCGACGAACATAATCTTCAGCGCTTGCGGTAGATGGTGCGAAAA
GCTGTTACTCTCTCTAGTTTTATACGTTTTTCTTCGCGTAGCGCTAGATA
TCAGTGGTGCTCCCCCGGACAAGAGATTGGAAACTCACGAACGGATTTGT
ACAAACGCACATGAAAAAAGGCATCGTCTGGGACAGGCAATCAGCTTCAG
TGCTCTGTACATTCTGCGACTCCTCGGCGACACTTGTTGAGTCTGAATGC
TTTTTTAGCTTGAAAATACCCGAGAACGCTATCCTTCACTCTTCGACAAT
ACAGTACAGTAGTACGGTACAGTAATAGGACAGACAGTAGTACTCAGGTG
ATAGGCTTCTGTGACTTCTGGGAGCGATATGCGACCGCTGCTGCTGCGGT
TGCGGCGATATTGACAGACTCTGCAATGATCCGGATGGACCATGTCTACG
CCCTATCTTTGGCATTTATGTCAGGATTCATGCTTGGAAGCTTGACAATA
TGGCGAAGACAAGGACCACAGCAGGTGACACGCCGACAGAGCAGCCGAGG
CTCGAAGCGGAAATCGGATGTCGGCAAAAACGTCGAGAGCAGCAGTGCTT
CGGGGGCACCTGTTTCCCCCCCCGGCGACGCCGGAGGACACCAACATGAC
GGGGGTGGGCATCAGCAGACCATGAAAGGATCGCGGCGAAGCAAGAGGGA
GAGAAAAAAACGACTCTGCCCCAAGGACCTCGCTCTCGATGCATTTACGA
AAGTCGCGAGGTCCCATATATCTTGCATAGGCGCGGGTGACTACCAGTCG
CTACTGCTGCTTCCAAGAGCCACCTTCATACAGTTCGGGTGTTTCGTCCC
TTACGCGAGCTGCCGTGATAGCCTAGTTAACCTTGGACAAGCCCGGACTG
CAACAGCGAGCGTTGATCATCTCCGGATACTTTACGTAAGCTGCTCGTGG
GCCAGCACTGGTGACGTGCAGGGCTCAGAGGACGACTTCAAAACAGTACG
TGCTTTACTCGAGCGAAGCCCGGACTTGGCGTACGTTTATGTAGGCCGAT
CTTGCGTCGCTAGCGATAAAAGACAAGACGTGCGGGCTGCGCAGCTTCGC
CATGTGCCCCTGGTCCTCCTAAGAGCGGATACAACCCTCGTTCTTCCACG
TCCGACAACCTCTAATGATGAAGAGAAGCGGGGAATCTCGCGCCCACACA
GCGATATCAACTTACACATGCGAGGTGCATGGTCTCGTATGGAGCTCGCC
GTTGGAGCTGTCGGACAGTCCAAGGTGCTGGTTGTGTTTCGAGCGCCGCC
ATTTCCTGAAACCATCTGGGAGCTTAAGCCAGGCTTAACCGACGTCAAGG
AGGTGGCCATGAAGGTGGTGGACGCAAAGGAGACTGCCGCCCCCGGTGCT
ACCAATATATCATCTCCGCCAACCACGTCAAGGGGATCAGATGAGAATTC
AGAAGGAAAGGCGGTGGCGGCAGCCGCAATGAAAGCGGCGTGTGATGCTT
GGCTCAGTTCAGAGCTGAATCCTTTGGCTTCACTTGAAAGAGCGAGGTTG
GCCGTGGCGGCCGCAGAGGATTTGGCAGGTGCCGGGCTGCTGCACGCCAT
ACGAGAAATGCGTCCGACGCCACACTCAGATGTCACGGAGGATTTAAGGA
AATCGCTTGGCGAAGAACACATGGCCGGAGAAACGGAGCTTGCGATGTCC
TTGTTGATGTTCACGGTGTTTTGCACGCAGCCGAAAAAGCGAGCAACATA
CACGGATGGGTTTTTGGAGGACACTGGAAAGATGGAGGTGGTCTACCGTC
CGATAGCGGTTGTGCGAAGCCCGTATAAGGAGAGATTTGGGACTCCAAGA
CAGCCGCAAGTGACCGCTGCGGTTCGCCACGGAGGTGCTCAGGAAGGACG
TATTGTTTTTCTGAAGGGCCATGGCTATGGTGAGGTAACACGGGCATATC
CCAGTAAATACTGTTATTCCTCTGTCGTTGTGAAAGCCTTCTAGCGTCCA
GTAGGTACTCTAACTACATTTTTTTTGCATCTGATACGTATCTATCCATA
AATCGGGCGACTGCAAGCGGCTGGACACCACCGTTCCTTTGAGCACCTTC
TCGCGTGAACAGCGGCCACCCAACGACTGCGATTTGCAGTGGCCCTGTTT
GTAATTGTTACACGTCATCACGTCTTTCCCATGCTCCTGCCCGTGAACCT
TCCTTTCCCTCCCTGTAAAGACACTCTTCTATAACTCCGTTTCGTCGTCT
CTGACCACCCCTGTGCTCCTAATTTCAGAGGAGGCACTGCAAGACGTGAG
TGGCTTTGAGATGATCTGGGTAATCTCCCACATGCATCTCAACAAGGGTT
GGAATCGCCAAGTCCGGCCTCCACGGCTCCCGGAGGAACGCAAGGGCCTG
TTCTCGACTCGCAGCCCTCATCGTCCGAACGCGGTGGCACTATCGTCATT
GCGAGTGGGCCGCGTAGACCCAGCCGAGGGCGTTATTTATGTCCACGGTC
TCGACTTGCTCGATGGTACGTGGAATCGAACATGTCCAAAATGTGCTGTC
TTATTTGATAGGCAGTATGTTGTATACTTTACACCTGTTGGGGGACGTCA
CATTCAGTGCAAACAGCTTACAGCATGTGCTGCGGGCGTGTGTTTCATGC
CATGCGATTATCATGAGAGCCAACAAAAACTCTGTCGAAAGACAGAGTAA
AGGACATAGTAAATCATGGCAATGAGACATATGTCCGTTCATTTATATAT
TGTCTGCTGCCATGCTTTATATCGACCGCTATCATGACGAATGTTATCAC
TGATTTTTGTTTTGCAACTCACGATCTGTCTCTCTGCTAGGAACTCCGGT
GCTGGATGTGAAGCCTTACATTGGGTGAGTCGTGTAGCTCGTACGTTCAA
AGTTGCCATTCGGTTTTTTGTTTTTTGTTTGCAATGTGGCTGCGAAACGG
AGACAAACGGATGTATTCACCAAACGCTCTCGTTCAAGGCCGATGAGACA
CCAGTAGCGCGTGTCGCTGCTTTCTGCATGTTCTTACAGGATTCATTTTG
CTTCAAATTAATGGTCCGGTTCAGGCGCCTACCCGCTATTCACAAACTCT
AAGTGCCGCCGCGGTTTAATAAAATGGCATGTGTGACTTGGTATTTGTAA
TACTGTTGCTCGCTGTACATCGTGGACGGGTTTCAGGTACTGCGATGCGT
TCCCCGACGTTAAGGCTGGCTGGCTTGATGCGCTTGAATCGGATCACGAG
GACCAAGGCGATTTCTTGCAGAAGTTTAGCGTTGGTGCGGCACTTGTGCA
CACGGCGAACGGCGACAACTCTTATAATTCGTCGGTTGTCGGGAAAGAAG
CAACCTGAGTTGCTCTAGGAGGGAATGATTGCGGTTGGTGTTGTCCGCAG
CTTTTACGAGGGATACTTGTCTTGTGTTTTGAAAGCGTTCATGTGCCTCG
ATGTACATACCAAGTAAAAAACCACAGTAACACGTCCTTATATAATGCAT
GCATTAACAACACTGCGAAGTTAACTCGCAACGGTGCATGAGTCACATAT
CAACTTTTGCGGCGTTTCTTACCCTTTATTTAATGTAGAGTAATGCATGG
CGACTGGTTCTTCTTAGATGCCCCAGCAAGAATCTAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1403:20664..24302-

>mRNA_H-paniculata_contig1403.2465.1 ID=mRNA_H-paniculata_contig1403.2465.1|Name=mRNA_H-paniculata_contig1403.2465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3894bp|location=Sequence derived from alignment at H-paniculata_contig1403:20664..24302- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCGGATGGACCATGTCTACGCCCTATCTTTGGCATTTATGTCAGG
ATTCATGCTTGGAAGCTTGACAATATGGCGAAGACAAGGACCACAGCAGG
TGACACGCCGACAGAGCAGCCGAGGCTCGAAGCGGAAATCGGATGTCGGC
AAAAACGTCGAGAGCAGCAGTGCTTCGGGGGCACCTGTTTCCCCCCCCGG
CGACGCCGGAGGACACCAACATGACGGGGGTGGGCATCAGCAGACCATGA
AAGGATCGCGGCGAAGCAAGAGGGAGAGAAAAAAACGACTCTGCCCCAAG
GACCTCGCTCTCGATGCATTTACGAAAGTCGCGAGGTCCCATATATCTTG
CATAGGCGCGGGTGACTACCAGTCGCTACTGCTGCTTCCAAGAGCCACCT
TCATACAGTTCGGGTGTTTCGTCCCTTACGCGAGCTGCCGTGATAGCCTA
GTTAACCTTGGACAAGCCCGGACTGCAACAGCGAGCGTTGATCATCTCCG
GATACTTTACGTAAGCTGCTCGTGGGCCAGCACTGGTGACGTGCAGGGCT
CAGAGGACGACTTCAAAACAGTACGTGCTTTACTCGAGCGAAGCCCGGAC
TTGGCGTACGTTTATGTAGGCCGATCTTGCGTCGCTAGCGATAAAAGACA
AGACGTGCGGGCTGCGCAGCTTCGCCATGTGCCCCTGGTCCTCCTAAGAG
CGGATACAACCCTCGTTCTTCCACGTCCGACAACCTCTAATGATGAAGAG
AAGCGGGGAATCTCGCGCCCACACAGCGATATCAACTTACACATGCGAGG
TGCATGGTCTCGTATGGAGCTCGCCGTTGGAGCTGTCGGACAGTCCAAGG
TGCTGGTTGTGTTTCGAGCGCCGCCATTTCCTGAAACCATCTGGGAGCTT
AAGCCAGGCTTAACCGACGTCAAGGAGGTGGCCATGAAGGTGGTGGACGC
AAAGGAGACTGCCGCCCCCGGTGCTACCAATATATCATCTCCGCCAACCA
CGTCAAGGGGATCAGATGAGAATTCAGAAGGAAAGGCGGTGGCGGCAGCC
GCAATGAAAGCGGCGTGTGATGCTTGGCTCAGTTCAGAGCTGAATCCTTT
GGCTTCACTTGAAAGAGCGAGGTTGGCCGTGGCGGCCGCAGAGGATTTGG
CAGGTGCCGGGCTGCTGCACGCCATACGAGAAATGCGTCCGACGCCACAC
TCAGATGTCACGGAGGATTTAAGGAAATCGCTTGGCGAAGAACACATGGC
CGGAGAAACGGAGCTTGCGATGTCCTTGTTGATGTTCACGGTGTTTTGCA
CGCAGCCGAAAAAGCGAGCAACATACACGGATGGGTTTTTGGAGGACACT
GGAAAGATGGAGGTGGTCTACCGTCCGATAGCGGTTGTGCGAAGCCCGTA
TAAGGAGAGATTTGGGACTCCAAGACAGCCGCAAGTGACCGCTGCGGTTC
GCCACGGAGGTGCTCAGGAAGGACGTATTGTTTTTCTGAAGGGCCATGGC
TATGATGATCCGGATGGACCATGTCTACGCCCTATCTTTGGCATTTATGT
CAGGATTCATGCTTGGAAGCTTGACAATATGGCGAAGACAAGGACCACAG
CAGGTGACACGCCGACAGAGCAGCCGAGGCTCGAAGCGGAAATCGGATGT
CGGCAAAAACGTCGAGAGCAGCAGTGCTTCGGGGGCACCTGTTTCCCCCC
CCGGCGACGCCGGAGGACACCAACATGACGGGGGTGGGCATCAGCAGACC
ATGAAAGGATCGCGGCGAAGCAAGAGGGAGAGAAAAAAACGACTCTGCCC
CAAGGACCTCGCTCTCGATGCATTTACGAAAGTCGCGAGGTCCCATATAT
CTTGCATAGGCGCGGGTGACTACCAGTCGCTACTGCTGCTTCCAAGAGCC
ACCTTCATACAGTTCGGGTGTTTCGTCCCTTACGCGAGCTGCCGTGATAG
CCTAGTTAACCTTGGACAAGCCCGGACTGCAACAGCGAGCGTTGATCATC
TCCGGATACTTTACGTAAGCTGCTCGTGGGCCAGCACTGGTGACGTGCAG
GGCTCAGAGGACGACTTCAAAACAGTACGTGCTTTACTCGAGCGAAGCCC
GGACTTGGCGTACGTTTATGTAGGCCGATCTTGCGTCGCTAGCGATAAAA
GACAAGACGTGCGGGCTGCGCAGCTTCGCCATGTGCCCCTGGTCCTCCTA
AGAGCGGATACAACCCTCGTTCTTCCACGTCCGACAACCTCTAATGATGA
AGAGAAGCGGGGAATCTCGCGCCCACACAGCGATATCAACTTACACATGC
GAGGTGCATGGTCTCGTATGGAGCTCGCCGTTGGAGCTGTCGGACAGTCC
AAGGTGCTGGTTGTGTTTCGAGCGCCGCCATTTCCTGAAACCATCTGGGA
GCTTAAGCCAGGCTTAACCGACGTCAAGGAGGTGGCCATGAAGGTGGTGG
ACGCAAAGGAGACTGCCGCCCCCGGTGCTACCAATATATCATCTCCGCCA
ACCACGTCAAGGGGATCAGATGAGAATTCAGAAGGAAAGGCGGTGGCGGC
AGCCGCAATGAAAGCGGCGTGTGATGCTTGGCTCAGTTCAGAGCTGAATC
CTTTGGCTTCACTTGAAAGAGCGAGGTTGGCCGTGGCGGCCGCAGAGGAT
TTGGCAGGTGCCGGGCTGCTGCACGCCATACGAGAAATGCGTCCGACGCC
ACACTCAGATGTCACGGAGGATTTAAGGAAATCGCTTGGCGAAGAACACA
TGGCCGGAGAAACGGAGCTTGCGATGTCCTTGTTGATGTTCACGGTGTTT
TGCACGCAGCCGAAAAAGCGAGCAACATACACGGATGGGTTTTTGGAGGA
CACTGGAAAGATGGAGGTGGTCTACCGTCCGATAGCGGTTGTGCGAAGCC
CGTATAAGGAGAGATTTGGGACTCCAAGACAGCCGCAAGTGACCGCTGCG
GTTCGCCACGGAGGTGCTCAGGAAGGACGTATTGTTTTTCTGAAGGGCCA
TGGCTATGAGGAGGCACTGCAAGACGTGAGTGGCTTTGAGATGATCTGGG
TAATCTCCCACATGCATCTCAACAAGGGTTGGAATCGCCAAGTCCGGCCT
CCACGGCTCCCGGAGGAACGCAAGGGCCTGTTCTCGACTCGCAGCCCTCA
TCGTCCGAACGCGGTGGCACTATCGTCATTGCGAGTGGGCCGCGTAGACC
CAGCCGAGGGCGTTATTTATGTCCACGGTCTCGACTTGCTCGATGAGGAG
GCACTGCAAGACGTGAGTGGCTTTGAGATGATCTGGGTAATCTCCCACAT
GCATCTCAACAAGGGTTGGAATCGCCAAGTCCGGCCTCCACGGCTCCCGG
AGGAACGCAAGGGCCTGTTCTCGACTCGCAGCCCTCATCGTCCGAACGCG
GTGGCACTATCGTCATTGCGAGTGGGCCGCGTAGACCCAGCCGAGGGCGT
TATTTATGTCCACGGTCTCGACTTGCTCGATGGAACTCCGGTGCTGGATG
TGAAGCCTTACATTGGGAACTCCGGTGCTGGATGTGAAGCCTTACATTGG
GTACTGCGATGCGTTCCCCGACGTTAAGGCTGGCTGGCTTGATGCGCTTG
AATCGGATCACGAGGACCAAGGCGATTTCTTGCAGAAGTTTAGCGTTGGT
GCGGCACTTGTGCACACGGCGAACGGCGACAACTCTTATAATTCGTCGGT
TGTCGGGAAAGAAGCAACCTGAGTACTGCGATGCGTTCCCCGACGTTAAG
GCTGGCTGGCTTGATGCGCTTGAATCGGATCACGAGGACCAAGGCGATTT
CTTGCAGAAGTTTAGCGTTGGTGCGGCACTTGTGCACACGGCGAACGGCG
ACAACTCTTATAATTCGTCGGTTGTCGGGAAAGAAGCAACCTGA
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