mRNA_H-paniculata_contig14021.2460.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14021.2460.1 vs. uniprot
Match: A0A6H5JZG3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 9.690e-13 Identity = 56/164 (34.15%), Postives = 83/164 (50.61%), Query Frame = 1 Query: 457 SNGESTLVTPSSCTPQPFPMGIA--LRRHIEEMTPQLSLLKDVAGRADARRGISGLAMSCHLMIVQTAKHDQEDALESLKRCIEVLVSYPGVCTM-MSPHMIHMMTSLLAAVDD---REQYQQLRDIHNSIGHR-RSPIPPIEEVQRVGNTCNNVLCRLIHTSI 927 S E+ + T SC + M + + I + L+D A R R+GI GL ++ L+ + AK D A+E + RC+EV ++PGVC M H+ H+M + LAA+ + R Y +LR +NS SPIPP EE Q V + C+ CR + I Sbjct: 319 SENEAGIRTACSCRVREASMAVVDTMASRINNHSCDFERLEDAADRPLIRQGIGGLIINGTLVFEKAAKGDFSGAVERIDRCVEVFETFPGVCRFFMGSHVAHIMVTALAAIGNSRTRGMYDRLRRAYNSTRFPDSSPIPPFEEWQGVSSFCDTFYCRTMELLI 482 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14021.2460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14021.2460.1 >prot_H-paniculata_contig14021.2460.1 ID=prot_H-paniculata_contig14021.2460.1|Name=mRNA_H-paniculata_contig14021.2460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=487bp MEACMNVETVETARACMSMAVLYTSTMQQDRSRDGVLLADAIISKLGPGAback to top mRNA from alignment at H-paniculata_contig14021:284..6165+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14021.2460.1 ID=mRNA_H-paniculata_contig14021.2460.1|Name=mRNA_H-paniculata_contig14021.2460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5882bp|location=Sequence derived from alignment at H-paniculata_contig14021:284..6165+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14021:284..6165+ >mRNA_H-paniculata_contig14021.2460.1 ID=mRNA_H-paniculata_contig14021.2460.1|Name=mRNA_H-paniculata_contig14021.2460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2922bp|location=Sequence derived from alignment at H-paniculata_contig14021:284..6165+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |