mRNA_H-paniculata_contig14019.2456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14019.2456.1
Unique NamemRNA_H-paniculata_contig14019.2456.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.940e-67
Identity = 110/114 (96.49%), Postives = 113/114 (99.12%), Query Frame = 1 
Query:    4 KTPSKKSAKAPEKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            KTPSKKSAKAP+KAGDKK++NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    3 KTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 191 bits (485), Expect = 7.970e-61
Identity = 99/114 (86.84%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:    4 KTPSKKSAKAPEKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            KTPSKKSAKAP+KAGDK K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   17 KTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.230e-59
Identity = 101/115 (87.83%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:    4 KTPSKKSAKAPEKAGD-KKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            K PSKK+AKAP+KA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    3 KIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 186 bits (473), Expect = 3.650e-59
Identity = 98/116 (84.48%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    4 KTPSKKSAKAPEKAGDKKKSNK--RLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            KTPSKKSAKAP+K G+K K+ K  R+ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    3 KTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 185 bits (469), Expect = 1.270e-58
Identity = 96/114 (84.21%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:    4 KTPSKKSAKAPEKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            KTPSKK+AKAP+KAG K+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    3 KTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 187 bits (476), Expect = 8.140e-58
Identity = 101/115 (87.83%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:    4 KTPSKKSAKAPEKAGD-KKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            K PSKK+AKAP+KA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  136 KIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 182 bits (462), Expect = 1.580e-57
Identity = 96/114 (84.21%), Postives = 105/114 (92.11%), Query Frame = 1 
Query:    4 KTPSKKSAKAPEKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            KTPSK+SAKAP+KA    KS KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    3 KTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
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BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 178 bits (452), Expect = 6.190e-56
Identity = 96/114 (84.21%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:    4 KTPSKKSAKAPEKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            KTPSKK+A AP+KAG K +S KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   10 KTPSKKAA-APKKAGGK-RSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
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BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Match: A0A6G0XRP0_9STRA (Histone H2B n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRP0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.720e-55
Identity = 92/114 (80.70%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:   10 PSKKSAKAPEKAGDKKKSNK--RLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            P+KK+AKAP+K+G++KKS K  R+ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+  E+ KL+RYNKK TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK+TSS
Sbjct:    6 PNKKTAKAPKKSGNEKKSRKTRRVESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIGAEASKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKYTSS 119
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BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 177 bits (448), Expect = 2.440e-55
Identity = 98/118 (83.05%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:    4 KTPSKKS-AKAPEKA--GDKKK-SNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 345
            KTPSK++ AKA +KA  GDKKK S KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    3 KTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14019.2456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI1.940e-6796.49Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA7.970e-6186.84Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA1.230e-5987.83Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA3.650e-5984.48Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
H2B_OLILU1.270e-5884.21Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A836CJT3_9STRA8.140e-5887.83Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWR8_PHATC1.580e-5784.21Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA6.190e-5684.21Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A6G0XRP0_9STRA1.720e-5580.70Histone H2B n=1 Tax=Aphanomyces euteiches TaxID=10... [more]
B8BX20_THAPS2.440e-5583.05Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14019contigH-paniculata_contig14019:4633..4980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue4.8e-52
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929114.2777455-CDS-H-paniculata_contig14019:4632..49801622929114.2777455-CDS-H-paniculata_contig14019:4632..4980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14019 4633..4980 +
1691480736.9514341-CDS-H-paniculata_contig14019:4632..49801691480736.9514341-CDS-H-paniculata_contig14019:4632..4980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14019 4633..4980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14019.2456.1prot_H-paniculata_contig14019.2456.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14019 4633..4980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14019.2456.1

>prot_H-paniculata_contig14019.2456.1 ID=prot_H-paniculata_contig14019.2456.1|Name=mRNA_H-paniculata_contig14019.2456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
PKTPSKKSAKAPEKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGM
SIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKH
AVSEGTKAVTKFTSS*
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mRNA from alignment at H-paniculata_contig14019:4633..4980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14019.2456.1 ID=mRNA_H-paniculata_contig14019.2456.1|Name=mRNA_H-paniculata_contig14019.2456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig14019:4633..4980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTAAGACACCCTCGAAGAAGTCTGCCAAGGCCCCTGAGAAGGCGGGAGA
CAAGAAGAAGAGCAACAAGAGGTTAGAGTCGTACTCGTCGTACATCTACA
AGGTCCTGAAACAGGTGCACCCCGACACGGGTATCTCCAAGCGTGGCATG
TCTATCATGAATTCGTTTATCAACGACGTCTTCGAGCGCGTTGCGGGCGA
GTCCGGCAAGCTGACTCGTTACAACAAGAAGGCTACTCTCTCTTCTCGTG
AGGTTCAGACGGCGGTGCGTCTGATGCTTCCTGGGGAGCTGGCCAAGCAC
GCTGTGTCTGAGGGTACCAAGGCCGTCACCAAGTTTACTTCGTCCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14019:4633..4980+

>mRNA_H-paniculata_contig14019.2456.1 ID=mRNA_H-paniculata_contig14019.2456.1|Name=mRNA_H-paniculata_contig14019.2456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig14019:4633..4980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTAAGACACCCTCGAAGAAGTCTGCCAAGGCCCCTGAGAAGGCGGGAGA
CAAGAAGAAGAGCAACAAGAGGTTAGAGTCGTACTCGTCGTACATCTACA
AGGTCCTGAAACAGGTGCACCCCGACACGGGTATCTCCAAGCGTGGCATG
TCTATCATGAATTCGTTTATCAACGACGTCTTCGAGCGCGTTGCGGGCGA
GTCCGGCAAGCTGACTCGTTACAACAAGAAGGCTACTCTCTCTTCTCGTG
AGGTTCAGACGGCGGTGCGTCTGATGCTTCCTGGGGAGCTGGCCAAGCAC
GCTGTGTCTGAGGGTACCAAGGCCGTCACCAAGTTTACTTCGTCCTAGCC
TAAGACACCCTCGAAGAAGTCTGCCAAGGCCCCTGAGAAGGCGGGAGACA
AGAAGAAGAGCAACAAGAGGTTAGAGTCGTACTCGTCGTACATCTACAAG
GTCCTGAAACAGGTGCACCCCGACACGGGTATCTCCAAGCGTGGCATGTC
TATCATGAATTCGTTTATCAACGACGTCTTCGAGCGCGTTGCGGGCGAGT
CCGGCAAGCTGACTCGTTACAACAAGAAGGCTACTCTCTCTTCTCGTGAG
GTTCAGACGGCGGTGCGTCTGATGCTTCCTGGGGAGCTGGCCAAGCACGC
TGTGTCTGAGGGTACCAAGGCCGTCACCAAGTTTACTTCGTCCTAG
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