mRNA_H-paniculata_contig140.2447.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig140.2447.1
Unique NamemRNA_H-paniculata_contig140.2447.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Match: A0A6H5KFZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.370e-12
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:  596 GVLCVVAGDEETFRFMYDLIRGNPSKYQWMRIYVGDWHLLLHMGKALIRR 745
            G  C++AGDEET+RF+Y L++ +P  Y+ +R Y GDWHLLLHM KAL+RR
Sbjct:  605 GAPCIIAGDEETYRFIYHLMKQDPDNYRQIRRYPGDWHLLLHMAKALLRR 654
[Close]
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Match: A0A6H5KK93_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK93_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.850e-12
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:  596 GVLCVVAGDEETFRFMYDLIRGNPSKYQWMRIYVGDWHLLLHMGKALIRR 745
            G  C++AGDEET+RF+Y L++ +P  Y+ +R Y GDWHLLLHM KAL+RR
Sbjct:  903 GAPCIIAGDEETYRFIYHLMKQDPDNYRQIRRYPGDWHLLLHMAKALLRR 952
[Close]
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Match: A0A6H5KEL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.560e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 2 
Query:  581 DERGRGVLCVVAGDEETFRFMYDLIRGNPSKYQWMRIYVGDWHLLLHMGKALIRR 745
            D    G  C++AGDEET+RF+Y L++  P  Y+ +R Y GDWHLLLHM KAL++R
Sbjct:  694 DAGNDGAPCIIAGDEETYRFIYHLMKQGPDNYRQIRRYPGDWHLLLHMAKALLKR 748
[Close]
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Match: A0A6H5K3J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.400e-8
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  596 GVLCVVAGDEETFRFMYDLIRGNPSKYQWMRIYVGDWHLLLHMGKALIRR 745
            G  C++AGDEET+R +Y + +     Y+ +R Y GDWHLLLHM KAL++R
Sbjct:  198 GAPCIIAGDEETYRVLYHIQKQERMAYRQLRRYPGDWHLLLHMAKALLKR 247
[Close]
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Match: A0A6H5KL66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL66_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.670e-8
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  608 VVAGDEETFRFMYDLIRGNPSKYQWMRIYVGDWHLLLHMGKALIRR 745
            +V GDEET+R M  L +GNP KY+WM  + G WH++LHM KALI R
Sbjct:  109 LVEGDEETYRIMVQLKKGNPEKYKWMLPHPGGWHIMLHMTKALISR 154
[Close]
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Match: A0A6H5LAS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAS0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.820e-8
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  608 VVAGDEETFRFMYDLIRGNPSKYQWMRIYVGDWHLLLHMGKALIRR 745
            +V GDEET+R M  L +GNP KY+WM  + G WH++LHM KALI R
Sbjct: 1419 LVEGDEETYRIMVQLKKGNPEKYKWMLPHPGGWHIMLHMTKALISR 1464
[Close]
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Match: A0A6H5K6J4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.330e-8
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  596 GVLCVVAGDEETFRFMYDLIRGNPSKYQWMRIYVGDWHLLLHMGKALIRR 745
            G   ++ GDEET++ MY ++   P +Y+ +R Y GDWHLLLHM KA++RR
Sbjct:  115 GAPFILGGDEETYKHMYHVMAQEPREYRQVRRYPGDWHLLLHMAKAMLRR 164
[Close]
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Match: D7FTC0_ECTSI (Similar to solute carrier family 35, member F4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC0_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.150e-8
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 2 
Query:  578 VDERGRGV---LCVVAGDEETFRFMYDLIRGNPSKYQWMRIYVGDWHLLLHMGKALIRR 745
            VD R R     L +V GDEET+R M  L +GNP KY+WM  + G WH++LH+ KAL+ R
Sbjct:  348 VDGRWRSTVSRLVLVEGDEETYRIMVQLKKGNPEKYKWMVPHPGGWHIMLHVTKALMTR 406
[Close]
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Match: A0A6H5JR31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR31_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.810e-8
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 2 
Query:  596 GVLCVVAGDEETFRFMYDLIRGNPSKYQWMRIYVGDWHLLLHMGKALIRR 745
            G  C++AGDEET+R +Y + +     Y+  R Y GDWHLLLHM KAL++R
Sbjct:  558 GTPCIIAGDEETYRVLYHIQKQERIAYRQFRRYPGDWHLLLHMAKALLKR 607
[Close]
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Match: D7FIA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 6.660e-8
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:  596 GVLCVVAGDEETFRFMYDLIRGNPSKYQWMRIYVGDWHLLLHMGKALIRR 745
            G   ++ GDEET++ MY ++  +P +Y+ +R Y GDWHLLLHM KA++RR
Sbjct:  151 GAPFILGGDEETYKHMYHVMAQDPREYRQVRRYPGDWHLLLHMAKAMLRR 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig140.2447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KFZ4_9PHAE6.370e-1260.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK93_9PHAE6.850e-1260.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEL8_9PHAE1.560e-1154.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3J0_9PHAE1.400e-852.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL66_9PHAE1.670e-858.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAS0_9PHAE1.820e-858.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6J4_9PHAE2.330e-850.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTC0_ECTSI3.150e-850.85Similar to solute carrier family 35, member F4 n=1... [more]
A0A6H5JR31_9PHAE3.810e-852.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIA9_ECTSI6.660e-850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig140contigH-paniculata_contig140:45902..47112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size745
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig140.2447.1prot_H-paniculata_contig140.2447.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig140 45931..46906 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.4762692-UTR-H-paniculata_contig140:45901..459301622929112.4762692-UTR-H-paniculata_contig140:45901..45930Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig140 45902..45930 +
1691480736.1048334-UTR-H-paniculata_contig140:45901..459301691480736.1048334-UTR-H-paniculata_contig140:45901..45930Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig140 45902..45930 +
1622929112.5219526-UTR-H-paniculata_contig140:46906..471121622929112.5219526-UTR-H-paniculata_contig140:46906..47112Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig140 46907..47112 +
1691480736.1431997-UTR-H-paniculata_contig140:46906..471121691480736.1431997-UTR-H-paniculata_contig140:46906..47112Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig140 46907..47112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.4891589-CDS-H-paniculata_contig140:45930..463351622929112.4891589-CDS-H-paniculata_contig140:45930..46335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig140 45931..46335 +
1691480736.1242552-CDS-H-paniculata_contig140:45930..463351691480736.1242552-CDS-H-paniculata_contig140:45930..46335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig140 45931..46335 +
1622929112.507595-CDS-H-paniculata_contig140:46801..469061622929112.507595-CDS-H-paniculata_contig140:46801..46906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig140 46802..46906 +
1691480736.1345053-CDS-H-paniculata_contig140:46801..469061691480736.1345053-CDS-H-paniculata_contig140:46801..46906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig140 46802..46906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig140.2447.1

>prot_H-paniculata_contig140.2447.1 ID=prot_H-paniculata_contig140.2447.1|Name=mRNA_H-paniculata_contig140.2447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MTYSTRQKRERRKAETRKNEAQVALDVESMVFTWDNCDHETYRGVHGGGQ
YISAIAYFGIIGSSRHVRLPTFHGHRRQRDMTLEDITEGASWHRDGEHWG
VWSAVFENAAYEVGVKRIEIKGGDIETCLEAELRKLTIPMSTVGAYEGDN
SADHEVSIHDAGLDQDLGG*
back to top

mRNA from alignment at H-paniculata_contig140:45902..47112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig140.2447.1 ID=mRNA_H-paniculata_contig140.2447.1|Name=mRNA_H-paniculata_contig140.2447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1211bp|location=Sequence derived from alignment at H-paniculata_contig140:45902..47112+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGACTTCTTCGCCGATATCGGGTACTGCATGACGTACTCTACGAGACAA
AAGAGGGAGCGGAGGAAGGCGGAGACGAGAAAGAACGAGGCACAAGTTGC
ACTCGATGTCGAGAGTATGGTCTTTACTTGGGACAATTGCGACCACGAGA
CATATCGAGGCGTGCATGGGGGTGGCCAGTATATTTCTGCTATCGCGTAC
TTTGGCATAATCGGCAGTTCTCGGCATGTACGGTTGCCCACCTTTCATGG
TCACCGGAGGCAAAGGGATATGACCCTGGAGGACATTACGGAAGGAGCTA
GCTGGCACCGAGACGGGGAACACTGGGGCGTGTGGAGTGCCGTGTTTGAG
AATGCTGCTTACGAAGTGGGCGTAAAGAGGATCGAAATCAAGGGTGGCGA
CATCGAAACGTGTCTAGAAGCGGAGTTGCGAAAAGTGAGAACCAGTTGGC
ATGTCGGGATCCAACCCTCGCCGGTAGGGAATACCGCCAGCTACGAATTA
AATCAAATGAGTAGTCACATAAATCTGGTCGAACCGAGAGTTGTTTCCCG
CCGGAATTTTTTTTATTAGTCGCGTTCGTCCTGGTCCAGCCGACGACGTC
GCACCCGTATTTCCTCGTCAATTGAGATTGAGAGAAGCCGAAAGGCAGCA
TTTACGGTGGATTTTTGAGACATGGCCGGCCCGAGAGGAGGCGCTCGAAG
GCACACTGTGATAAGATATTGATGAAATGTTCACTAACGCTGACATTGTG
CTCTTTCATGTTGGCTCAACAAGTCAGCTGAATATTGCACAGATAACGTT
TTTTGCGCTGAAGAAGGCATCTCAATTTACGGGTCCGTAATATGCCCCCG
CAATATATACCCACCAGACGTGCATCCTCTTGCCCGCGTCCTTACACCAG
TTGACTATACCGATGTCAACAGTCGGTGCGTACGAAGGAGATAACAGCGC
AGACCATGAAGTATCTATTCATGACGCTGGGCTCGATCAAGATCTGGGCG
GATAATGAATCGAGGGTGGACTGCATCGGCGCCCATCTCGCGTGTAGACG
AGAGAGGCCGAGGTGTGCTGTGTGTAGTGGCTGGCGACGAGGAAACGTTC
CGCTTCATGTACGACCTCATACGCGGCAACCCCAGCAAGTATCAGTGGAT
GAGGATATACGTCGGTGACTGGCACCTGCTGCTGCACATGGGGAAGGCCC
TCATAAGGCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig140:45902..47112+

>mRNA_H-paniculata_contig140.2447.1 ID=mRNA_H-paniculata_contig140.2447.1|Name=mRNA_H-paniculata_contig140.2447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig140:45902..47112+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTACTCTACGAGACAAAAGAGGGAGCGGAGGAAGGCGGAGACGAG
AAAGAACGAGGCACAAGTTGCACTCGATGTCGAGAGTATGGTCTTTACTT
GGGACAATTGCGACCACGAGACATATCGAGGCGTGCATGGGGGTGGCCAG
TATATTTCTGCTATCGCGTACTTTGGCATAATCGGCAGTTCTCGGCATGT
ACGGTTGCCCACCTTTCATGGTCACCGGAGGCAAAGGGATATGACCCTGG
AGGACATTACGGAAGGAGCTAGCTGGCACCGAGACGGGGAACACTGGGGC
GTGTGGAGTGCCGTGTTTGAGAATGCTGCTTACGAAGTGGGCGTAAAGAG
GATCGAAATCAAGGGTGGCGACATCGAAACGTGTCTAGAAGCGGAGTTGC
GAAAAATGACGTACTCTACGAGACAAAAGAGGGAGCGGAGGAAGGCGGAG
ACGAGAAAGAACGAGGCACAAGTTGCACTCGATGTCGAGAGTATGGTCTT
TACTTGGGACAATTGCGACCACGAGACATATCGAGGCGTGCATGGGGGTG
GCCAGTATATTTCTGCTATCGCGTACTTTGGCATAATCGGCAGTTCTCGG
CATGTACGGTTGCCCACCTTTCATGGTCACCGGAGGCAAAGGGATATGAC
CCTGGAGGACATTACGGAAGGAGCTAGCTGGCACCGAGACGGGGAACACT
GGGGCGTGTGGAGTGCCGTGTTTGAGAATGCTGCTTACGAAGTGGGCGTA
AAGAGGATCGAAATCAAGGGTGGCGACATCGAAACGTGTCTAGAAGCGGA
GTTGCGAAAATTGACTATACCGATGTCAACAGTCGGTGCGTACGAAGGAG
ATAACAGCGCAGACCATGAAGTATCTATTCATGACGCTGGGCTCGATCAA
GATCTGGGCGGATAATTGACTATACCGATGTCAACAGTCGGTGCGTACGA
AGGAGATAACAGCGCAGACCATGAAGTATCTATTCATGACGCTGGGCTCG
ATCAAGATCTGGGCGGATAA
back to top