mRNA_H-paniculata_contig13990.2431.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13990.2431.1
Unique NamemRNA_H-paniculata_contig13990.2431.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13990.2431.1 vs. uniprot
Match: D7G443_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G443_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 3.150e-78
Identity = 125/200 (62.50%), Postives = 149/200 (74.50%), Query Frame = 1 
Query:  154 LVFAWSFLGFETTFSIRGRKRRFLRPFSSLGWLAFIYFLLFLLSFAIWILGTWSIAMDMVGNVCRDTNPLLYSFALFLVGAYWMGVFFGLVALFGTLCGKGIQSRAQASMGKAANYAEDRDKAHMLRAEHQLVGSKFDELDREGTGAIDTEEAERLIEELGVGLSSKKLKKAMAILDPGGDGVVTRTDFMSWYKEHGRHG 753
            +VFAWSFLGFET FSIRGRKRRFLRPFSSL ++A +Y LLF +S AIWI GTW+I  D VGN C +  PLLYSF + LV  YW+GV FG V L   L GK IQS AQA++ K   +A++RDK  +L AE QLV  KFD  D EG G ID ++AE LIEELG+GLSSKKLKKAM  LDP G+GVV++ DF+ WY E+G+ G
Sbjct:    1 MVFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFGTWAIVKDRVGNSCANEVPLLYSFCVALVAVYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQFAQNRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQAEELIEELGIGLSSKKLKKAMGQLDPAGEGVVSKQDFIEWYAENGQGG 200
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BLAST of mRNA_H-paniculata_contig13990.2431.1 vs. uniprot
Match: A0A7S3HFS1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFS1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.740e-22
Identity = 66/217 (30.41%), Postives = 115/217 (53.00%), Query Frame = 1 
Query:   94 CGYPIDTFVSYAVVSSYLLLLVFAWSFLGFETTFSIR--GRKRRFLRPFSSLGWLAFIYFLLFLLSFAIWILGTWSIAMDMVGNVCRDTNPLLYSFALFLVGAYWMGVFFGLVALFGTLCGKGIQSRAQASMGKAANYAEDRDKAHMLRAEHQLVGSKFDELDREGTGAIDTEEAERLIEELGVGLSSKKLKKAMAILDPGGDGVVTRTDFMSWYKE 738
            CGY +D+F+S AV   YL L+VF+W ++G     S+   G +   L PF SL ++ F YF++ ++SF +W++G+  + + +    C  T P+LY F+LFLV  YW+G    ++ L     G  I     A + K    A   D+      E +L  ++FD+ D E    I  ++   ++E+LGV + +++L+  +A LD    G +     + W+++
Sbjct:   66 CGYALDSFISAAVAVCYLFLMVFSWVYVGDTVILSLPALGIELTLLTPFKSLKYIVFYYFVVAVVSFIVWLVGSVLLQLSVF---CVSTAPVLYQFSLFLVVMYWLGFVITVLYLIKMFFGSNI-----AKIIKETTRASTIDEV-----EEKLFRARFDQYDPEKENRIANDKVPLMLEDLGVFVPAEELETLIATLDEEETGFIEFKPLLHWFRK 269
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BLAST of mRNA_H-paniculata_contig13990.2431.1 vs. uniprot
Match: A0A6T5NSR5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NSR5_HETAK)

HSP 1 Score: 101 bits (252), Expect = 7.000e-22
Identity = 69/242 (28.51%), Postives = 122/242 (50.41%), Query Frame = 1 
Query:   10 PALLLTLHCCILSKILQMDVIDRDGDIFCGYPIDTFVSYAVVSSYLLLLVFAWSFLGFETTFSIRGRKRRFLRPFSSLGWLAFIYFLLFLLSFAIWILGTWSIAMDMVGNVCRDTNPLLYSFALFLVGAYWMGVFFGLVALFGTLCGKGIQSRAQASMGKAANYAEDRDKAHMLRAEHQLVGSKFDELDREGTGAIDTEEAERLIEELGVGLSSKKLKKAMAILDPGGDGVVTRTDFMSWYK 735
            PA+   +   + S ++ +  +  D  +    P+D F+  A+  S + LL F W F+G   + +I+GRK   LRPF+++ +L   + L+++ S A W+ G++ +        C +  P LYSF+LF+V  YW+G+  GLV L   +  K I    +  +GK           +   A+   + +KF E D  GT  +  +    L ++ G  LS+ +L++A  +LDP   G +    F+SW++
Sbjct:   43 PAVFANIIVFVGSILVTLSKVYPDEYVCSAQPLDQFLEGAIAISLIFLLCFMWIFIGLPVSINIKGRKWTVLRPFTNIIFLGAAFLLIWVFSLAWWLYGSYMVGAGAWS--CSNNTPALYSFSLFVVVFYWVGLGLGLVHLVVNIFSKQIGEGLK--VGKRL--------VNPALADDDFLLAKFAEYDEGGTEQVARQHLGPLCKDCGRPLSTDELQEARELLDPDQTGFIGADAFLSWFR 272
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BLAST of mRNA_H-paniculata_contig13990.2431.1 vs. uniprot
Match: A0A1I8GUG5_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GUG5_9PLAT)

HSP 1 Score: 53.5 bits (127), Expect = 1.860e-5
Identity = 24/71 (33.80%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  535 AEHQLVGSKFDELDREGTGAIDTEEAERLIEELGVGLSSKKLKKAMAILDPGGDGVVTRTDFMSWYKEHGR 747
            A+ + + + FD  DR+GTG ++ +E E L+  LG  ++ ++++  MA  D   DGV++ ++F+ +YK HG+
Sbjct:    2 ADPESLKAVFDYFDRDGTGTLELDELEELLNALGQCVTKEEVRSIMAADDINSDGVMSLSEFIEFYKRHGK 72
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BLAST of mRNA_H-paniculata_contig13990.2431.1 vs. uniprot
Match: A0A1I8G0Q7_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8G0Q7_9PLAT)

HSP 1 Score: 53.5 bits (127), Expect = 2.650e-5
Identity = 24/71 (33.80%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  535 AEHQLVGSKFDELDREGTGAIDTEEAERLIEELGVGLSSKKLKKAMAILDPGGDGVVTRTDFMSWYKEHGR 747
            A+ + + + FD  DR+GTG ++ +E E L+  LG  ++ ++++  MA  D   DGV++ ++F+ +YK HG+
Sbjct:    2 ADPESLKAVFDYFDRDGTGTLELDELEELLNALGQCVTKEEVRSIMAADDINSDGVMSLSEFIEFYKRHGK 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13990.2431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G443_ECTSI3.150e-7862.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3HFS1_9STRA3.740e-2230.41Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6T5NSR5_HETAK7.000e-2228.51Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1I8GUG5_9PLAT1.860e-533.80Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A1I8G0Q7_9PLAT2.650e-533.80Uncharacterized protein n=2 Tax=Macrostomum lignan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13990contigH-paniculata_contig13990:1132..3880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-25_000620.1
Exons4
Model size762
Cds size762
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13990.2431.1prot_H-paniculata_contig13990.2431.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13990 1132..3880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.8091269-CDS-H-paniculata_contig13990:1131..12841622929110.8091269-CDS-H-paniculata_contig13990:1131..1284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13990 1132..1284 -
1691480735.5486677-CDS-H-paniculata_contig13990:1131..12841691480735.5486677-CDS-H-paniculata_contig13990:1131..1284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13990 1132..1284 -
1622929110.8225522-CDS-H-paniculata_contig13990:1984..21041622929110.8225522-CDS-H-paniculata_contig13990:1984..2104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13990 1985..2104 -
1691480735.5652454-CDS-H-paniculata_contig13990:1984..21041691480735.5652454-CDS-H-paniculata_contig13990:1984..2104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13990 1985..2104 -
1622929110.8369644-CDS-H-paniculata_contig13990:2538..27341622929110.8369644-CDS-H-paniculata_contig13990:2538..2734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13990 2539..2734 -
1691480735.5752394-CDS-H-paniculata_contig13990:2538..27341691480735.5752394-CDS-H-paniculata_contig13990:2538..2734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13990 2539..2734 -
1622929110.857378-CDS-H-paniculata_contig13990:3587..38801622929110.857378-CDS-H-paniculata_contig13990:3587..3880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13990 3588..3880 -
1691480735.5869777-CDS-H-paniculata_contig13990:3587..38801691480735.5869777-CDS-H-paniculata_contig13990:3587..3880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13990 3588..3880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13990.2431.1

>prot_H-paniculata_contig13990.2431.1 ID=prot_H-paniculata_contig13990.2431.1|Name=mRNA_H-paniculata_contig13990.2431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp
PALPALLLTLHCCILSKILQMDVIDRDGDIFCGYPIDTFVSYAVVSSYLL
LLVFAWSFLGFETTFSIRGRKRRFLRPFSSLGWLAFIYFLLFLLSFAIWI
LGTWSIAMDMVGNVCRDTNPLLYSFALFLVGAYWMGVFFGLVALFGTLCG
KGIQSRAQASMGKAANYAEDRDKAHMLRAEHQLVGSKFDELDREGTGAID
TEEAERLIEELGVGLSSKKLKKAMAILDPGGDGVVTRTDFMSWYKEHGRH
GEN*
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mRNA from alignment at H-paniculata_contig13990:1132..3880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13990.2431.1 ID=mRNA_H-paniculata_contig13990.2431.1|Name=mRNA_H-paniculata_contig13990.2431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2749bp|location=Sequence derived from alignment at H-paniculata_contig13990:1132..3880- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCTCTGCCAGCTCTGCTGTTAACGCTTCACTGCTGCATCCTCTCCAA
AATACTGCAGATGGATGTAATCGATCGTGACGGGGACATATTTTGCGGCT
ACCCAATCGATACGTTTGTCTCGTATGCAGTGGTTAGCAGCTACCTTCTG
CTGCTAGTCTTCGCGTGGTCCTTCCTGGGGTTCGAGACAACATTTTCTAT
CAGAGGTCGAAAACGGCGGTTTCTACGACCTTTTTCCAGTCTGGGATGGC
TAGCGTTTATATATTTTTTGTTGTTTCTCCTGAGCTTTGCCATGTAAGTA
CCCTATCTTCTGCGTGCAGACGTGCATCTATGTAGCAGGGGACGAGAGAG
GGGCATGGTTAACGCCCCCATTTGTTGTTTTCTTACCCCAGTTCTCTTCT
CGAGGGAGGCGAATGTTAGCGTTAGGACAAACGAGCTAAGCAGGCACACC
TGGAACATCCTGCGCATAATGACGGATATAGTGCTGCGTTATATATTCTT
TATTACATGGGACCATGTGATTGACCGGAACAGTCCGTACATAATCGTAG
CGCAAAATGGTATGGGCATACCTGCTTGTGTTCATTCCTTTTTCCATCCT
ATGGCTCGCGGTCGGCCTTTCAATTCTCGTGGCGGAAATTATACGAGATC
ATGGTATGCCCCAATGGAAGGTTCACCTCCTCTATTTCAATGTCACCCCG
AGTCGATCTGAGTGGACAGAACCCAAACCACGATACTAACAATCCTGACC
CTGAACCCAAACTCGTAGACTCTACTGCGTATTGTAAGAGCGGGTGTTCC
AGATAGGTCACAGAATGGTCTAGGCGTACCCGTTCGTGTCGTCTGTCCTT
CGTGGTATTGCCCTCAAATGTAAAACGTCTGCACCTTGACGGTTCCCAGG
CAATGTCGATGCTTGCCTTAGACCTGTTGATGCCTCTTCTCGGTAGAAAC
TACCAGCCTCTCTCTAATTGGTAAGATCCGCAGATGAACAGATGGAAGCG
CTCGGTACATGGAAGCTGACGGAGGTAGTATGTTCTACGAACGGGGGCGA
AATATTTCGAGGCATTCCTCTGCCTTTCCCACCTTTTTCATTTCAATCTG
GCGCTAAATAGCGTCTGTGTTTCCCTCACCGTCCTTCTTCTAGCAGATGG
ATACTGGGCACGTGGTCAATTGCAATGGATATGGTGGGGAACGTCTGTCG
TGATACAAATCCATTGCTTTACTCGTTTGCCCTTTTTCTGGTGGGAGCCT
ACTGGATGGGTGTCTTTTTCGGACTGGTGGCTCTGTTTGGGACTCTGTGT
GGGAAAGGAATCCAGTCTCGTGCTCAGGCATCAATGGGCAAGGTGCGTCA
CACTCCTGAGTAATTTTCTGATTTGAAATGTAGGCGCGACAACTCTTTTG
CTTATGTAGATAATCCAGAGTTGACCACGAACCAGAAGCCTTCCATAACG
TACTTCCGTGGGAAACTGGGTTTCGATGTACTGCCTGCCGTGCCTAGATG
AATATTTCACAGAAATCTAAACGCGAACAGTTATCACGCGGTTGTAGGAC
TCTAATACAGCTTCACGCCTCGTCGAAGTGGATACCATATCCTTAGCCAG
CAACGTCCTAAACAAAGCATACCCCTGCTTCGATACAGCACTCTCGAAAG
TGTAATTCCGGCGGCCTCGTGTACAAGTTTGCTCTTTCACGCCTTTGTAG
AGCTGTTGCTTATGAATGGAACAGGAGCTCAGGCTCAGGCCTTTGTCGTT
TTTTTACCCCACCGTTTGTTTTTCAGGCGGCCAACTATGCGGAAGACCGT
GACAAGGCACACATGCTGAGGGCGGAGCACCAGCTAGTAGGAAGCAAATT
CGACGAGCTCGACAGGGAGGGTACGGGCGCCATCGACACAGAGGAGGTAG
TCCCCCACATCCGCCCACACACACTTCCACCCTCGCCATTCACGACCCAA
CCCTTTTATAAGTTCCTGTTGACTCGCCCAGCAAGAAATATACACTTGAA
GACTAAACTTCTTCTATACGGGGTTTTAAACAGAAGACATCGAGACGTTT
GTGGAGACATGCGGTCAACATGTTCTAGCCCTACAGTTACTATATCACCT
CAAATTCGTCGAAAGTGCTTGCAAAGCTTGACGCCGCACATAGATTGAAG
CTAGCGCCGGTTCCTTGCGAAGGTGGTGTGAGTTATATCAACCCGGACCG
ACGGCGCCCAATACTCTAAAAATATCATTTTTTTTGGTGTAAACGCGGGA
AAGGGAAACAAGCGACGCGTAAAGACTGAAGAGATCAGTGTATGCCGATA
GTCAAAACTTTACACTATCGTGCCGTCTCAGGAAAGGCACTTACTCGAAT
GTATTCTTAGAAGAGGAACCCGCTAAATAGGCTACTCCACCGTTCTGGCG
ACGTCCACTGACGAACAAGAAGTTTGCGTCTCTACCTTAGTTTCACAGTC
CTTTGGAATTTCTGCCAACTGACATATCGTGCGTACGAAGGGTCATCCGA
TCAGAGCTCAAGCCATTTACGCTGTTTTAAGAACTGATTGTCGAGGTGCT
TGATTTCCCACCATGGATGCGTTACTGTTTTGGCGGGTCGTACCAGGCCG
AGAGACTGATTGAGGAACTCGGGGTAGGGCTGAGTAGCAAGAAGCTCAAG
AAGGCAATGGCCATCCTAGATCCGGGGGGCGATGGTGTCGTCACCAGGAC
GGACTTCATGTCTTGGTACAAAGAACACGGGCGACATGGAGAGAACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13990:1132..3880-

>mRNA_H-paniculata_contig13990.2431.1 ID=mRNA_H-paniculata_contig13990.2431.1|Name=mRNA_H-paniculata_contig13990.2431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig13990:1132..3880- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCTCTGCCAGCTCTGCTGTTAACGCTTCACTGCTGCATCCTCTCCAA
AATACTGCAGATGGATGTAATCGATCGTGACGGGGACATATTTTGCGGCT
ACCCAATCGATACGTTTGTCTCGTATGCAGTGGTTAGCAGCTACCTTCTG
CTGCTAGTCTTCGCGTGGTCCTTCCTGGGGTTCGAGACAACATTTTCTAT
CAGAGGTCGAAAACGGCGGTTTCTACGACCTTTTTCCAGTCTGGGATGGC
TAGCGTTTATATATTTTTTGTTGTTTCTCCTGAGCTTTGCCATCCAGCTC
TGCCAGCTCTGCTGTTAACGCTTCACTGCTGCATCCTCTCCAAAATACTG
CAGATGGATGTAATCGATCGTGACGGGGACATATTTTGCGGCTACCCAAT
CGATACGTTTGTCTCGTATGCAGTGGTTAGCAGCTACCTTCTGCTGCTAG
TCTTCGCGTGGTCCTTCCTGGGGTTCGAGACAACATTTTCTATCAGAGGT
CGAAAACGGCGGTTTCTACGACCTTTTTCCAGTCTGGGATGGCTAGCGTT
TATATATTTTTTGTTGTTTCTCCTGAGCTTTGCCATATGGATACTGGGCA
CGTGGTCAATTGCAATGGATATGGTGGGGAACGTCTGTCGTGATACAAAT
CCATTGCTTTACTCGTTTGCCCTTTTTCTGGTGGGAGCCTACTGGATGGG
TGTCTTTTTCGGACTGGTGGCTCTGTTTGGGACTCTGTGTGGGAAAGGAA
TCCAGTCTCGTGCTCAGGCATCAATGGGCAAGATGGATACTGGGCACGTG
GTCAATTGCAATGGATATGGTGGGGAACGTCTGTCGTGATACAAATCCAT
TGCTTTACTCGTTTGCCCTTTTTCTGGTGGGAGCCTACTGGATGGGTGTC
TTTTTCGGACTGGTGGCTCTGTTTGGGACTCTGTGTGGGAAAGGAATCCA
GTCTCGTGCTCAGGCATCAATGGGCAAGGCGGCCAACTATGCGGAAGACC
GTGACAAGGCACACATGCTGAGGGCGGAGCACCAGCTAGTAGGAAGCAAA
TTCGACGAGCTCGACAGGGAGGGTACGGGCGCCATCGACACAGAGGAGGC
GGCCAACTATGCGGAAGACCGTGACAAGGCACACATGCTGAGGGCGGAGC
ACCAGCTAGTAGGAAGCAAATTCGACGAGCTCGACAGGGAGGGTACGGGC
GCCATCGACACAGAGGAGGCCGAGAGACTGATTGAGGAACTCGGGGTAGG
GCTGAGTAGCAAGAAGCTCAAGAAGGCAATGGCCATCCTAGATCCGGGGG
GCGATGGTGTCGTCACCAGGACGGACTTCATGTCTTGGTACAAAGAACAC
GGGCGACATGGAGAGAACTGAGCCGAGAGACTGATTGAGGAACTCGGGGT
AGGGCTGAGTAGCAAGAAGCTCAAGAAGGCAATGGCCATCCTAGATCCGG
GGGGCGATGGTGTCGTCACCAGGACGGACTTCATGTCTTGGTACAAAGAA
CACGGGCGACATGGAGAGAACTGA
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