prot_H-paniculata_contig1398.2429.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1398.2429.1
Unique Nameprot_H-paniculata_contig1398.2429.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length395
Homology
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BLAST of mRNA_H-paniculata_contig1398.2429.1 vs. uniprot
Match: A0A6H5J745_9PHAE (MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.250e-36
Identity = 109/250 (43.60%), Postives = 132/250 (52.80%), Query Frame = 0 
Query:  111 VAAADSISVVAPPA--LSAGDEFTVEWTYATDDPVRSERTTGDLYPFEINVRTCGEDGRGCKNGGCGVATTHN---LCK-DKGTAGMGVCMDSDGSVDVKMPSDTPAGDYVLRVTYRGPTVSSYSSAEVEEASL-SACSTSFAISDPEIPAGNPVIAASDV---DAPA-KGFSPGDAFTARWAYDDGQGGGAGLFNVNLNSCEDGXXXXXXXGTIAHALCGSDGCYDPGPGDYDVRIPDSITTGLYKLEV 349
            VAA   I+ VA P   L+AG   TV W Y+TD       TTGDL PFEI +R+CG D       G G    +    LC  ++G A    CMDSDGS DV +P D  AG YV  VT+ G +  +  ++   +A L + CS SF + +          AA DV   +APA     PGDAFTA W Y+   G   G F VNL SC D        GT+   LCG  GCYDPGPGDYDVRIP   T G +KL+V
Sbjct:   72 VAALTEITNVAAPRSNLTAGTYHTVGWVYSTDTGAWG--TTGDLRPFEIELRSCGGDDAQQAECGLGELCGNEYLALCDLERGAA----CMDSDGSYDVLIPEDVDAGRYVFSVTHLGLSSWTSGASSTSDAGLVTGCSESFFVEE---------AAAKDVLATEAPAASSLQPGDAFTAEWEYEGVDGEANGRFEVNLFSCADQACEQDSCGTLVAELCGEAGCYDPGPGDYDVRIPADTTPGTFKLQV 306
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BLAST of mRNA_H-paniculata_contig1398.2429.1 vs. uniprot
Match: D7G261_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G261_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.570e-16
Identity = 46/87 (52.87%), Postives = 52/87 (59.77%), Query Frame = 0 
Query:  264 VDAPA-KGFSPGDAFTARWAYDDGQGGGAGLFNVNLNSCEDGXXXXXXXGTIAHALCGSDGCYDPGPGDYDVRIPDSITTGLYKLEV 349
            V+APA     PGDAFTA W Y+   G   G F VNL SC D        GT+   LCG  GCYDPGPGDYDVRIP   T G +KL++
Sbjct:  128 VEAPAASSLQPGDAFTAEWEYEGADGETNGNFEVNLFSCADQACEQDSCGTLVAELCGEAGCYDPGPGDYDVRIPADTTPGTFKLQI 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1398.2429.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J745_9PHAE1.250e-3643.60MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
D7G261_ECTSI3.570e-1652.87Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1398contigH-paniculata_contig1398:17115..23444 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1398.2429.1mRNA_H-paniculata_contig1398.2429.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1398 17091..23444 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1398.2429.1 ID=prot_H-paniculata_contig1398.2429.1|Name=mRNA_H-paniculata_contig1398.2429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=395bp
MSKIGYGINSFQQQHVPSAFLPVTATSSARPTSKAAIRRRPRSSPATTAA
ATPSAPMATAAAAVESSYIKAKRRRRSDSTNVGRVVSRTKTVMFSVGIMT
FWALQLGAPAVAAADSISVVAPPALSAGDEFTVEWTYATDDPVRSERTTG
DLYPFEINVRTCGEDGRGCKNGGCGVATTHNLCKDKGTAGMGVCMDSDGS
VDVKMPSDTPAGDYVLRVTYRGPTVSSYSSAEVEEASLSACSTSFAISDP
EIPAGNPVIAASDVDAPAKGFSPGDAFTARWAYDDGQGGGAGLFNVNLNS
CEDGSCDDGSCGTIAHALCGSDGCYDPGPGDYDVRIPDSITTGLYKLEVS
VDDIFACTDSAFNIVSSQPAAAAPTPAPVAPKPTAVPVPATTARP
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