mRNA_H-paniculata_contig1398.2427.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1398.2427.1
Unique NamemRNA_H-paniculata_contig1398.2427.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1398.2427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1398contigH-paniculata_contig1398:1282..3708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size500
Cds size498
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.446482-CDS-H-paniculata_contig1398:1281..13651622929110.446482-CDS-H-paniculata_contig1398:1281..1365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1398 1282..1365 -
1691480735.4362369-CDS-H-paniculata_contig1398:1281..13651691480735.4362369-CDS-H-paniculata_contig1398:1281..1365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1398 1282..1365 -
1622929110.4626343-CDS-H-paniculata_contig1398:3294..37081622929110.4626343-CDS-H-paniculata_contig1398:3294..3708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1398 3295..3708 -
1691480735.4443028-CDS-H-paniculata_contig1398:3294..37081691480735.4443028-CDS-H-paniculata_contig1398:3294..3708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1398 3295..3708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1398.2427.1prot_H-paniculata_contig1398.2427.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1398 1282..3708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1398.2427.1

>prot_H-paniculata_contig1398.2427.1 ID=prot_H-paniculata_contig1398.2427.1|Name=mRNA_H-paniculata_contig1398.2427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MSIDTAVLRFLGPHIMRPLTTPLLMGVVVLTAYPNRIASTLSLSKAKTPR
PQHHQPQQQRQSRPRHKTCSSNRPHTNSSTFRSSCATDPVFVYGQPHQRL
SHPQSQSAPPWSSRWDKRYVMALPSYGEGSRLGGGGNKGSAGGGGRRVGP
GRGSGSLGSDDKSGAG
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mRNA from alignment at H-paniculata_contig1398:1282..3708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1398.2427.1 ID=mRNA_H-paniculata_contig1398.2427.1|Name=mRNA_H-paniculata_contig1398.2427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2427bp|location=Sequence derived from alignment at H-paniculata_contig1398:1282..3708- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCATTGATACAGCAGTACTACGTTTTCTCGGACCACACATCATGAG
GCCATTGACAACTCCCCTCCTCATGGGGGTGGTAGTGCTGACGGCTTACC
CTAATAGAATAGCATCGACTTTATCTTTATCGAAAGCGAAGACGCCTCGA
CCGCAACACCACCAACCACAGCAGCAGCGGCAATCCAGGCCAAGACACAA
AACTTGCTCCAGCAACAGGCCGCATACTAATTCTAGTACATTTCGCAGCT
CTTGCGCCACCGACCCTGTGTTCGTCTACGGTCAGCCGCATCAGCGATTA
TCGCACCCACAATCTCAATCAGCCCCGCCATGGAGTAGCCGATGGGATAA
AAGATATGTCATGGCATTGCCTAGTTATGGAGAAGGAAGCCGCCTTGGAG
GTGGAGGAAATAAGGCGAGCGAACGGGGGTGGGCAGGGGAAAGAAGCTAA
CAATCATTTGTGCCCTACTTCGCTACTTCGGACCATAACGATGACGCAAT
TCAAATGCCTCTCAGTGCAAACTGACGGTGATGGATGTAAATTACATTTC
GATGGAGAAATCGCCTGCTACTGGTGCCGGGTAGTACTGTCTGTGGTGCG
GGATCTACTTTTTCTTCTCAGGCAGCCATGTCATGATTTACGGAAGCTTT
GTGAGTTTTTCCTCAACGTTGCTGGCTACCTTGTTTTCGATTAAAAAGAT
GCTGGTTTTCGATATCAACGATTACCCGCGGGCTGCCCCTGACAGCAATG
TTAAAGGCAGTATATATTTAGCCCCAGCACACTCGATCTACCATAGAGCA
TCGAAAATCTTAGGCAGAAAAGAGTATTCAATCTGTACAGTATCATCCGG
AAAATAAGCAGGACTTGCATGTGTGACTGTTCGCCAGGTGTACGACCACC
TGGTGACCATCTGTAGAGTGACCATTCATAGGCTTGTAAACGAATAAATA
CGTGTTTACCCCAAGACAAGGTTTATAATTCGAGATAGTTGCGAATACTC
TATTCGTATTTGTCCAAGGGGTGAAACGTTTTTCAACTTTTGACAGTCAC
CCAAGGGGTCTCAGAGAAGGAAGAGATTGAACCAACCCCGCCCCCCTCCC
GTCCATTCTGTCACTTTTTTTCGCCTCTTATCGCACTTCTGGGCGTGTAA
AGTTCTTTCTGTTGGGCTGTTTAGGTGACCTGTAGATCTTTTTATACGTT
CATGTAAGTGCCAATCCATCTGTATAGCACGTACAAGAGCGCAGATTAGG
CAATCAGTGCTCTTTTACACGGAAGTACATATGTTGGCTTCGCAGACCCG
TCGATCCAAAAGAGAACTCAAAACTGGAATTCTCATCTCCTAGCTATTTC
AAATAATTAATATAAACAGGATAGCTGGGACAATCTCCATGACAGCGCAT
TCTGCTGCAAATTTGTTGTCTGTTGTTGTTCGTGTAGACCCCGTGATGCC
GACATGATCTCGAAGCATCTTTCAGCACCAACGAACAAACCCAGCACCGT
CCACCGTGGCGATGCTCACTAAAATTTGGCAGGGTTTGCTTTGGGCAATA
GCTTCTCCTTGCGAAATATTTCGCCCCATAGGAATGCTACTGCTGTACTT
TCCCGCCGGCGCTGCACCACAGCCACTTTCTTCCGAAATGATCCTCTCAC
AATCTTCCAGGATCTGACCCCCCAAAACTGCCCTGGAGGCTCACTAGGAC
TTTTTTTAACGCTGAATAACAACAGATGTCCCGCGAAGCACTGGACAACA
ACACAGTACACCCCTAGTACAGCCCCCCCCCCCCCCCCAAATGCCCTTAT
CGCACTTGGGTGTGATTCAAGTCCTGCCTTCCGTGTGGCCCCTTGACTCA
CCCCTCGTGTTAGATCATGACCTCCAGGTGCAACCTTTCCCCGCGTTCGC
CAAGAGTCGGCTAGCCGCACTACAGGAAAACCAAGTAAACGCCTTTTATG
AAAAATGCATTAAAAACGCCCGAGATGCATCCTAAAAATCTAACAGATAT
AGAGAGTATATACTGTATTCGCGTATTAAATAACAGTAGCCTCCTCTCAG
GTCAGGGCATGATGATGAATTAATTTTTTTATTCCATGGGGCATTAAAAA
ATTCGGCTATTTTTTAATGCTACAAAAATGGGTTGCAGCTATGATTTTCG
ATGGATTATGAAAAATTATAACAAAATACGCAGAAATGTATAAAACACGG
TGCATGACACCTGCATGATTTAAAATTATGAAAAATATTAAGAAACTGTC
ATCTGGATTAAAACCTGTTGATGATAATGATATAAGATGATGATTATGAT
GGAAATTACCATTCACTGTTTTTTCCTCTTCCGTCAACGACAGGGATCAG
CCGGAGGAGGGGGCCGCCGCGTTGGGCCCGGTAGAGGATCAGGCAGCCTA
GGAAGCGATGACAAGAGCGGGGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1398:1282..3708-

>mRNA_H-paniculata_contig1398.2427.1 ID=mRNA_H-paniculata_contig1398.2427.1|Name=mRNA_H-paniculata_contig1398.2427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig1398:1282..3708- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCATTGATACAGCAGTACTACGTTTTCTCGGACCACACATCATGAG
GCCATTGACAACTCCCCTCCTCATGGGGGTGGTAGTGCTGACGGCTTACC
CTAATAGAATAGCATCGACTTTATCTTTATCGAAAGCGAAGACGCCTCGA
CCGCAACACCACCAACCACAGCAGCAGCGGCAATCCAGGCCAAGACACAA
AACTTGCTCCAGCAACAGGCCGCATACTAATTCTAGTACATTTCGCAGCT
CTTGCGCCACCGACCCTGTGTTCGTCTACGGTCAGCCGCATCAGCGATTA
TCGCACCCACAATCTCAATCAGCCCCGCCATGGAGTAGCCGATGGGATAA
AAGATATGTCATGGCATTGCCTAGTTATGGAGAAGGAAGCCGCCTTGGAG
GTGGAGGAAATAAGATGAGCATTGATACAGCAGTACTACGTTTTCTCGGA
CCACACATCATGAGGCCATTGACAACTCCCCTCCTCATGGGGGTGGTAGT
GCTGACGGCTTACCCTAATAGAATAGCATCGACTTTATCTTTATCGAAAG
CGAAGACGCCTCGACCGCAACACCACCAACCACAGCAGCAGCGGCAATCC
AGGCCAAGACACAAAACTTGCTCCAGCAACAGGCCGCATACTAATTCTAG
TACATTTCGCAGCTCTTGCGCCACCGACCCTGTGTTCGTCTACGGTCAGC
CGCATCAGCGATTATCGCACCCACAATCTCAATCAGCCCCGCCATGGAGT
AGCCGATGGGATAAAAGATATGTCATGGCATTGCCTAGTTATGGAGAAGG
AAGCCGCCTTGGAGGTGGAGGAAATAAGGGATCAGCCGGAGGAGGGGGCC
GCCGCGTTGGGCCCGGTAGAGGATCAGGCAGCCTAGGAAGCGATGACAAG
AGCGGGGCGGGGGGATCAGCCGGAGGAGGGGGCCGCCGCGTTGGGCCCGG
TAGAGGATCAGGCAGCCTAGGAAGCGATGACAAGAGCGGGGCGGGG
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