mRNA_H-paniculata_contig13979.2426.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13979.2426.1
Unique NamemRNA_H-paniculata_contig13979.2426.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13979.2426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13979contigH-paniculata_contig13979:519..1581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1064
Cds size804
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.3866308-UTR-H-paniculata_contig13979:518..7771622929110.3866308-UTR-H-paniculata_contig13979:518..777Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13979 519..777 +
1691480735.4198-UTR-H-paniculata_contig13979:518..7771691480735.4198-UTR-H-paniculata_contig13979:518..777Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13979 519..777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.4041097-CDS-H-paniculata_contig13979:777..15811622929110.4041097-CDS-H-paniculata_contig13979:777..1581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13979 778..1581 +
1691480735.4283397-CDS-H-paniculata_contig13979:777..15811691480735.4283397-CDS-H-paniculata_contig13979:777..1581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13979 778..1581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13979.2426.1prot_H-paniculata_contig13979.2426.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13979 778..1581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13979.2426.1

>prot_H-paniculata_contig13979.2426.1 ID=prot_H-paniculata_contig13979.2426.1|Name=mRNA_H-paniculata_contig13979.2426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=268bp
MGKGPAGRSSRLRSSGGGGGKGNFSHSGHHHGRNHHGGGGRWKNGAGGSP
GFDVSPATPAKPFGAHRQTYGGKYRGGSGGGGRGGGWSGGWPATPGSYNR
ANSVSSSKNRRGFDANAAAGTSFGSSSHQHTQHHQHQHHQHHEHQRQDGD
SWPKDVNHTPSSAAAAAATTGETNPEDGRSIPGEGSVGVRERLASVVGQQ
TPRRRIEFHPATRPDTVFSTSGASAIGLQVAARTSGDASVGTGKGGGSTG
GAATVGGGGGWRAQHESG
back to top

mRNA from alignment at H-paniculata_contig13979:519..1581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13979.2426.1 ID=mRNA_H-paniculata_contig13979.2426.1|Name=mRNA_H-paniculata_contig13979.2426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1063bp|location=Sequence derived from alignment at H-paniculata_contig13979:519..1581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACCTGTATGTTGAGTGTGGGATGGTCAATGCACGTCGCCATCACCTAG
GAAAATCGCTTCGGCAGTTCTCCCGGCAAGCTTGAAGAACGGAAAACAGT
CACGTATCTGTCAACCGAATTTCTACGTAGCTGGCACCGACAGAAAAAAC
ATCGCTGAGGTACCAAGAGGTTGGCCACGCAAAGCCAAAATCACACCCAT
CTGCTGCTGTCCAGACTGCAGAGGGTCAGTCAAGGTTTGGATTTTGGAAC
AAAAAAGTCATGGGGAAAGGTCCTGCAGGCCGCAGTAGCCGCCTCAGAAG
CAGTGGCGGAGGAGGCGGGAAAGGTAATTTTTCACACTCAGGCCATCATC
ACGGCAGGAATCATCATGGTGGGGGAGGAAGGTGGAAAAATGGTGCGGGC
GGGAGCCCAGGGTTCGACGTTTCACCGGCTACCCCAGCAAAACCATTCGG
AGCACATAGGCAAACGTATGGAGGGAAGTACAGAGGGGGCAGCGGCGGTG
GTGGCCGCGGCGGCGGATGGAGTGGTGGCTGGCCGGCGACGCCTGGCAGC
TACAACCGTGCGAACAGTGTTTCTTCTTCGAAAAACAGGCGTGGCTTCGA
TGCGAACGCCGCTGCAGGGACTTCTTTCGGCTCTTCGTCACACCAGCACA
CCCAACACCACCAACACCAGCACCACCAACACCACGAACATCAACGACAG
GATGGAGATTCTTGGCCCAAAGATGTGAACCACACTCCTAGCAGTGCCGC
CGCCGCCGCCGCCACCACAGGGGAGACGAACCCGGAGGACGGCAGAAGTA
TTCCAGGAGAAGGGTCCGTCGGCGTGCGCGAACGACTGGCTTCAGTAGTT
GGGCAGCAGACCCCGCGAAGGCGCATCGAGTTTCACCCCGCCACCCGACC
GGATACAGTATTTTCAACTTCTGGTGCTTCGGCAATTGGCTTACAAGTTG
CAGCAAGGACATCGGGTGATGCAAGCGTGGGCACCGGGAAGGGGGGCGGC
AGTACAGGGGGGGCGGCAACCGTAGGCGGCGGTGGTGGTTGGAGGGCTCA
GCACGAGAGCGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13979:519..1581+

>mRNA_H-paniculata_contig13979.2426.1 ID=mRNA_H-paniculata_contig13979.2426.1|Name=mRNA_H-paniculata_contig13979.2426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at H-paniculata_contig13979:519..1581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAAAGGTCCTGCAGGCCGCAGTAGCCGCCTCAGAAGCAGTGGCGG
AGGAGGCGGGAAAGGTAATTTTTCACACTCAGGCCATCATCACGGCAGGA
ATCATCATGGTGGGGGAGGAAGGTGGAAAAATGGTGCGGGCGGGAGCCCA
GGGTTCGACGTTTCACCGGCTACCCCAGCAAAACCATTCGGAGCACATAG
GCAAACGTATGGAGGGAAGTACAGAGGGGGCAGCGGCGGTGGTGGCCGCG
GCGGCGGATGGAGTGGTGGCTGGCCGGCGACGCCTGGCAGCTACAACCGT
GCGAACAGTGTTTCTTCTTCGAAAAACAGGCGTGGCTTCGATGCGAACGC
CGCTGCAGGGACTTCTTTCGGCTCTTCGTCACACCAGCACACCCAACACC
ACCAACACCAGCACCACCAACACCACGAACATCAACGACAGGATGGAGAT
TCTTGGCCCAAAGATGTGAACCACACTCCTAGCAGTGCCGCCGCCGCCGC
CGCCACCACAGGGGAGACGAACCCGGAGGACGGCAGAAGTATTCCAGGAG
AAGGGTCCGTCGGCGTGCGCGAACGACTGGCTTCAGTAGTTGGGCAGCAG
ACCCCGCGAAGGCGCATCGAGTTTCACCCCGCCACCCGACCGGATACAGT
ATTTTCAACTTCTGGTGCTTCGGCAATTGGCTTACAAGTTGCAGCAAGGA
CATCGGGTGATGCAAGCGTGGGCACCGGGAAGGGGGGCGGCAGTACAGGG
GGGGCGGCAACCGTAGGCGGCGGTGGTGGTTGGAGGGCTCAGCACGAGAG
CGGGATGGGGAAAGGTCCTGCAGGCCGCAGTAGCCGCCTCAGAAGCAGTG
GCGGAGGAGGCGGGAAAGGTAATTTTTCACACTCAGGCCATCATCACGGC
AGGAATCATCATGGTGGGGGAGGAAGGTGGAAAAATGGTGCGGGCGGGAG
CCCAGGGTTCGACGTTTCACCGGCTACCCCAGCAAAACCATTCGGAGCAC
ATAGGCAAACGTATGGAGGGAAGTACAGAGGGGGCAGCGGCGGTGGTGGC
CGCGGCGGCGGATGGAGTGGTGGCTGGCCGGCGACGCCTGGCAGCTACAA
CCGTGCGAACAGTGTTTCTTCTTCGAAAAACAGGCGTGGCTTCGATGCGA
ACGCCGCTGCAGGGACTTCTTTCGGCTCTTCGTCACACCAGCACACCCAA
CACCACCAACACCAGCACCACCAACACCACGAACATCAACGACAGGATGG
AGATTCTTGGCCCAAAGATGTGAACCACACTCCTAGCAGTGCCGCCGCCG
CCGCCGCCACCACAGGGGAGACGAACCCGGAGGACGGCAGAAGTATTCCA
GGAGAAGGGTCCGTCGGCGTGCGCGAACGACTGGCTTCAGTAGTTGGGCA
GCAGACCCCGCGAAGGCGCATCGAGTTTCACCCCGCCACCCGACCGGATA
CAGTATTTTCAACTTCTGGTGCTTCGGCAATTGGCTTACAAGTTGCAGCA
AGGACATCGGGTGATGCAAGCGTGGGCACCGGGAAGGGGGGCGGCAGTAC
AGGGGGGGCGGCAACCGTAGGCGGCGGTGGTGGTTGGAGGGCTCAGCACG
AGAGCGGG
back to top