mRNA_H-paniculata_contig13974.2424.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13974.2424.1
Unique NamemRNA_H-paniculata_contig13974.2424.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13974.2424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13974contigH-paniculata_contig13974:2399..6683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size705
Cds size702
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13974.2424.1prot_H-paniculata_contig13974.2424.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13974 2401..6683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.1285682-CDS-H-paniculata_contig13974:2400..28191622929110.1285682-CDS-H-paniculata_contig13974:2400..2819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13974 2401..2819 -
1691480735.3270588-CDS-H-paniculata_contig13974:2400..28191691480735.3270588-CDS-H-paniculata_contig13974:2400..2819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13974 2401..2819 -
1622929110.14426-CDS-H-paniculata_contig13974:4884..50651622929110.14426-CDS-H-paniculata_contig13974:4884..5065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13974 4885..5065 -
1691480735.3405275-CDS-H-paniculata_contig13974:4884..50651691480735.3405275-CDS-H-paniculata_contig13974:4884..5065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13974 4885..5065 -
1622929110.156654-CDS-H-paniculata_contig13974:6581..66831622929110.156654-CDS-H-paniculata_contig13974:6581..6683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13974 6582..6683 -
1691480735.351243-CDS-H-paniculata_contig13974:6581..66831691480735.351243-CDS-H-paniculata_contig13974:6581..6683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13974 6582..6683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13974.2424.1

>prot_H-paniculata_contig13974.2424.1 ID=prot_H-paniculata_contig13974.2424.1|Name=mRNA_H-paniculata_contig13974.2424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
LLLADASSVARTDARASFGVFRLHWVKRADKILEGVDGRTAKTLNDEFSA
AGAGREGGVMSVGSGGIGGASRVSLKSHGKNSMRKGSSSAEALRVVAEGG
NSNGSVYHRQRAPSSAAGVSPAGPKSAFSSSRRVSGFPTTSMSGAGATSS
TTPTPPISKRKTRPNLSSPAAAATPSSSVSTDTARSGGGGGIASMNSGTT
GAGAGSRVLGTTLVAGSPASSMKSPCRSATPGGA
back to top

mRNA from alignment at H-paniculata_contig13974:2399..6683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13974.2424.1 ID=mRNA_H-paniculata_contig13974.2424.1|Name=mRNA_H-paniculata_contig13974.2424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4285bp|location=Sequence derived from alignment at H-paniculata_contig13974:2399..6683- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCTGCTGGCGGACGCGTCCAGCGTTGCGAGGACCGACGCTCGTGCGTC
GTTCGGTGTGTTCCGTTTGCATTGGGTCAAGAGGGCGGACAAGATACTGG
AGGTAACGCAACGTTTACGTGGTGAAAGCAAGCAGAGACCGTCCTTACAA
GATGGTTTGATTTAAGTCTAACACAAGAGAAAACAAGAACACAAGTAGAC
TGGAGTTAGTGTGCCACTGAAAATTGTGTGTGTGTGTTGTATTGATTTAC
TCGACATGAGGGGTGCGGTTATGGTCCCCGTTTAGTGGTGCGACGAGTTT
GATGTTCAGTGCGAGGTGTGCAAACACGGAAATGTTTCGTTTCGTTTCAT
GGTAATTGATCTGTAAGAAATGCGGAAATGAAACGACGTGATTGGATATC
TGTATGGTTTAGAGCGGCTTTCCCACAAAAACTTGGTCAGATGTACCTCG
AACGTTGGTTATTGGACTAGTGTAGAATATGCCCAATTTTGTATTCGAAT
TCCTGGAGCATGTTCTACAGGACACGCGGATCTGGTTTGATCTGTTTTTG
TTCTGCCGTATATTTGGAATGTTCCATGAATCACACTGCAGCGTGCTGAG
TTTTTTTTTTTCTTTTTTCTTACGTTCGATTTTCCTTGCCTTCGAAACGT
GATTTTTTACAATAATCACATGTTGTATAATAATTAGCTTGTTATAGAAG
AATTAAGATGACCTCTATGATCAAGTTTCCAGCTCCAACAAAGCATGATG
ATAAAACGACCTACATGTTTTTTTTTCTTTTTTTTAATGCAAGTTTTTCT
GTGTGATGCTGAGTCAAACGACAAAGTATTAAACACCCAATTTTTAGCCA
TTTAAGCGAGAAGTCCATGAACGCTTGACGATGTTGGAGTCCCAATGATA
TTTCCGTAAAGTGACTTTATGACGTTTTCGTAAAACCTTACTAGGTAGGT
TGACAGGAGTTGTTGCACATGCCATTTATGTTTATGACGTCATGTCTGCG
TTATCGTATCATCTATAGGTGAGATTGCAAGAGCATAGGTATCACCTTTG
TTCTCTCGTCCTCGGCATATATGATTACGAGGTGGCTGTAGTATTGCATT
ATCTATATATATGTATTTTAATCCCCGGAAGGCTAAGGCAAAAGCCTCGT
TCCGATCATTCGTGGGTTATGTTCTTAAAAGCCTTGATATGAGTTCCCCT
TTTTTGTGCCTCAAATTGACGTACATGATCGCTGCTCACGAGATGACCGC
AGTATCGCATCATCTGAAGGTCAACCAGGTTCAGAATCCTCTTCAGTTAC
TTGCCGTTTACTTGTTGCTCTGCTTGACATGGATAAGTCATGACATGATG
ACTGCAGTATTGCATCATCTATTAGATGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTAAAAGTAAACAGCATGGACACCATCTACATCTATTATAGTT
CACCTCTGATGAATCAGAATTGTCCGTTAACCTTCCAATGTATTTATTCT
CTATCCGACCGCTCTCACTCACCTGTTCTGTTCGTTAGCGTCACGTTTGG
ATTAGATCATGTTCCACGGCCACACCGAAAGCACCACCTTTGTACGAATC
AATCACACAATCACACAGGGTGTCGATGGCAGGACGGCCAAGACGCTTAA
CGATGAGTTTTCTGCGGCGGGGGCGGGGCGTGAGGGAGGCGTAATGTCGG
TGGGCAGCGGGGGGATAGGGGGCGCATCGAGAGTGTCATTGAAGAGCCAC
GGAAAGAACTCCATGAGGAAAGGCTCTTCATCCGCAGAGGCACTGCGAGG
TAATGAGGCGTTTCCCCCGTACAGACGAAGATGAGGCCTCACATGAAATA
CCACAACATTTTGCATCTTTAAGATCGCACCCTGTATTGTTATTTTTCAG
GCTCGTTTTATTTTGCTCGACACCGATAGTGGTATTATTGGAAATATATC
GATGAGATTTTCCCGGTAGATCTCCTGTTTCGGCAGTGTATACTCTTGCT
TCTCGAGAAAAAAAATCGGATTTGGAAAATAACTAATATCAAGGATGGGG
CAATATCAAAGAGTGCCACGGTAAATCTTGTTTGGGCTGAGCCTCGAATA
CTGTGTTTTATATAGCTTGTTCCAAAATGGGATAGTTTTCTCAGTATGTG
TACAATTTAGTATTTACCGTGAAGTGATAATTATGTCAATATATTTAATG
TTACAGTCAGTACTTACCCTACAGTGCTCTCATTTAGCCACCCTGGGGCG
GTTTTAGGTTACTTGTCATTTGGTATTATATGTGGTCCCTCCCGAAACAC
ATTTCTCTCTTTGTATGAAATATATAGTCATAAGTATTGAATTTCCATTT
GAGCATAATTTCTTGGCGAATTTTCGTTGAACAATAGAACAAGAAAGATG
CTCTACCTAATGGATTGCTTTATTCGTAGTGGACCGTATCTTAATCTATG
TGTATCTATGAAACTAGCAGTGGAGCCATGGCTACGTATATATCGTGGTA
CAGTACTAGCGGGCACAGTGTACACGTTGCCCCTTTTTGCTCAAGGGATG
ACCTTGTTTCTCCGGAGATTTGTTTTGGTGATGAGCACGAAGAGACGATG
CCGCCACGTACGGAGCTCTTATTGCAATGATGGGCGTGGGCCCTGGTCGT
CGATTTGGAACAAGTTTTTAAAGGCTGCACTCAAGTCACTCTTCCTGTAA
ACCGAATCTTTATGCGAGCCTTTCGTAGCGAGCCACTCCGAGTGCAGCGA
GTCCGTGGGTCGAGGACGGGTAAATAACTGGATGGACGTAGCCGTGACTG
TCCAGTTCTTGTACATATAGGTACATGACATGTCTGAACAAGCAAGAAGT
AGTATGATAGATATCACGCGGTCGAGGTGTTTGGGTAGTCGCTCTCGGGA
GAGTGTCATGTTTCGTGTGTCATCCTCTCTATCTAATGAGAGTCTTCGTA
AGACTAGTTGGCTATGCCCGTGCACGCCCGCGTTTCGTCCTCGTACTCCA
CAATCAGAACCATCGCCTTTCTGGTCCGTGTTACTTGCCGGATCGTGTCC
GCTGCTTCGTGTCGGAGTTTCTTGTCTCGAAAGATCCGTCTTTGGGCTGA
CACGTGCCGTGGTTTGGTCATTTGATGGATTTTCTGTGGTGCGAAATGAA
AAACGAAAAACACTACATCGTTATTTTGTCGCCGCCTGGCGCAACTGTTT
AATTCATTCAGCAGTTTTTTTCGGCGTGTGTTTCGCCTTTCTACACGTTT
CTGGTTGGGGGCACGATAAACAAATAGTTCCTCACCTACCCCCCCACCCC
CCGGCGCACACGCACACGGACACGCACATGCACACGCATACAAAAATTCG
TTTTCAGGATTTACTTGATTACAGAATTGAAAAATATCCCAAAACGATAG
CAACCATAACGACCCACGACCGTTTTACTGCATTAATGAACTAAGTGCTA
TTCATGGTAAGCAAGTCACGGCTATCTATGCCGATGGTGTGTCTGAACCC
GTATACACTCTCAAATTGTTCCGTGTTCCGTAGCACTTTCAAAAAACAAG
TGACTGGAATGGAAACTGTCTTTTCCGAAGAGGAATATCTATCATTATCT
CCGTCATCATCAGCATTCATAATTATCGCCACCATCTCCATCACCATTAC
CATCGCCATCGTCATGATGGATGATAGACCATATTAATGAATATGGACAC
ACGCCCTCGTTTTTTTGTTTCCTTGAAACATCCGAACAATAGCCAAATAT
TCCTCTCTCTTTTTTTTCGATTTTCGATATTCGATATTCGATTTTCAATA
TTAATTTTGATAAAAATATCCTTTCTGACAACTTTTTTTTTTTTTTTCAA
CACTCCGAATACAGTGGTCGCAGAGGGTGGAAATTCCAACGGGTCGGTCT
ACCACAGACAGCGTGCACCGTCTTCCGCCGCCGGCGTCTCGCCCGCCGGC
CCCAAGTCCGCATTTTCTTCATCGCGGCGCGTAAGTGGCTTCCCCACAAC
TAGCATGAGTGGCGCCGGGGCAACATCATCGACTACCCCAACCCCTCCAA
TTTCGAAGAGAAAGACCCGACCAAACCTGTCATCTCCTGCTGCTGCAGCC
ACTCCTTCTTCGTCTGTGTCTACTGACACAGCTAGATCTGGCGGCGGGGG
GGGTATTGCCTCCATGAACTCCGGGACAACGGGAGCGGGAGCCGGTTCTC
GGGTCTTGGGAACTACCCTGGTGGCTGGTTCTCCCGCGAGCTCTATGAAG
TCTCCGTGTAGGTCGGCGACGCCGGGGGGAGCGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13974:2399..6683-

>mRNA_H-paniculata_contig13974.2424.1 ID=mRNA_H-paniculata_contig13974.2424.1|Name=mRNA_H-paniculata_contig13974.2424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig13974:2399..6683- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCTGCTGGCGGACGCGTCCAGCGTTGCGAGGACCGACGCTCGTGCGTC
GTTCGGTGTGTTCCGTTTGCATTGGGTCAAGAGGGCGGACAAGATACTGG
AGTTGCTGCTGGCGGACGCGTCCAGCGTTGCGAGGACCGACGCTCGTGCG
TCGTTCGGTGTGTTCCGTTTGCATTGGGTCAAGAGGGCGGACAAGATACT
GGAGGGTGTCGATGGCAGGACGGCCAAGACGCTTAACGATGAGTTTTCTG
CGGCGGGGGCGGGGCGTGAGGGAGGCGTAATGTCGGTGGGCAGCGGGGGG
ATAGGGGGCGCATCGAGAGTGTCATTGAAGAGCCACGGAAAGAACTCCAT
GAGGAAAGGCTCTTCATCCGCAGAGGCACTGCGAGGGTGTCGATGGCAGG
ACGGCCAAGACGCTTAACGATGAGTTTTCTGCGGCGGGGGCGGGGCGTGA
GGGAGGCGTAATGTCGGTGGGCAGCGGGGGGATAGGGGGCGCATCGAGAG
TGTCATTGAAGAGCCACGGAAAGAACTCCATGAGGAAAGGCTCTTCATCC
GCAGAGGCACTGCGAGTGGTCGCAGAGGGTGGAAATTCCAACGGGTCGGT
CTACCACAGACAGCGTGCACCGTCTTCCGCCGCCGGCGTCTCGCCCGCCG
GCCCCAAGTCCGCATTTTCTTCATCGCGGCGCGTAAGTGGCTTCCCCACA
ACTAGCATGAGTGGCGCCGGGGCAACATCATCGACTACCCCAACCCCTCC
AATTTCGAAGAGAAAGACCCGACCAAACCTGTCATCTCCTGCTGCTGCAG
CCACTCCTTCTTCGTCTGTGTCTACTGACACAGCTAGATCTGGCGGCGGG
GGGGGTATTGCCTCCATGAACTCCGGGACAACGGGAGCGGGAGCCGGTTC
TCGGGTCTTGGGAACTACCCTGGTGGCTGGTTCTCCCGCGAGCTCTATGA
AGTCTCCGTGTAGGTCGGCGACGCCGGGGGGAGCGTGGTCGCAGAGGGTG
GAAATTCCAACGGGTCGGTCTACCACAGACAGCGTGCACCGTCTTCCGCC
GCCGGCGTCTCGCCCGCCGGCCCCAAGTCCGCATTTTCTTCATCGCGGCG
CGTAAGTGGCTTCCCCACAACTAGCATGAGTGGCGCCGGGGCAACATCAT
CGACTACCCCAACCCCTCCAATTTCGAAGAGAAAGACCCGACCAAACCTG
TCATCTCCTGCTGCTGCAGCCACTCCTTCTTCGTCTGTGTCTACTGACAC
AGCTAGATCTGGCGGCGGGGGGGGTATTGCCTCCATGAACTCCGGGACAA
CGGGAGCGGGAGCCGGTTCTCGGGTCTTGGGAACTACCCTGGTGGCTGGT
TCTCCCGCGAGCTCTATGAAGTCTCCGTGTAGGTCGGCGACGCCGGGGGG
AGCG
back to top