mRNA_H-paniculata_contig13966.2421.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13966.2421.1
Unique NamemRNA_H-paniculata_contig13966.2421.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 2.360e-89
Identity = 160/228 (70.18%), Postives = 185/228 (81.14%), Query Frame = 1 
Query:    4 YGLGLRRFRNETASPNPSGERSVAV---------------NGGGERGGGERDLGG-GSVAQCFEQVPAMFFDQRFSLEDPAVFESAIMSVGTDQPERLAHYLDLVEVCLLKQISQRSNAFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRRRDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQNDLGKLQSLKHV 639
            YGLGLRRFRN  ++ N  G +                   NGG  + G ERDLGG GSV+QCFEQVP+MFFD+ F+L+DPAVFESA+M+ G +QPERLAH+LDLVEVCLLKQIS RS+AFFEGLKTSQDLQTHV GACTTLYQLRE+M+ M++DVLAGPMRVPQLQRRR NL+SLE TLE VA VQQSQAA++ LLAAEDYLGALDILQSAK TV+N+LGKL SL++V
Sbjct:  213 YGLGLRRFRNGGSTGNADGGKEATXXXXXXXXXXXXXXXXNGG--KAGSERDLGGAGSVSQCFEQVPSMFFDKEFTLQDPAVFESAVMAAGAEQPERLAHFLDLVEVCLLKQISHRSDAFFEGLKTSQDLQTHVTGACTTLYQLRESMRCMEKDVLAGPMRVPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNV 438
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BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 1.700e-87
Identity = 162/230 (70.43%), Postives = 187/230 (81.30%), Query Frame = 1 
Query:    1 RYGLGLRRFRNETASPNPSGERSVAV----------------NGGGERGGGERDLGG-GSVAQCFEQVPAMFFDQRFSLEDPAVFESAIMSVGTDQPERLAHYLDLVEVCLLKQISQRSNAFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRRRDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQNDLGKLQSLKHV 639
            RYGLGLRRFRN  ++ N  G +  A                 NGG  + G ERDLGG GSV+QCFEQVP+MFFD+ F+L+DPAVFESA+M+ G +QPERLAH+LDLVEVCLLKQIS RS+AFFEGLKTSQDLQTHV GACTTLYQLRE+M+ M++DVLAGPMRVPQLQRRR NL+SLE TLE VA VQQSQAA++ LLAAEDYLGALDILQSAK TV+N+LGKL SL++V
Sbjct:  126 RYGLGLRRFRNGGSTGNADGGKEAATXXXXXXXXXXXXXXXXNGG--KAGSERDLGGRGSVSQCFEQVPSMFFDKEFTLQDPAVFESAVMAAGAEQPERLAHFLDLVEVCLLKQISHRSDAFFEGLKTSQDLQTHVTGACTTLYQLRESMRCMEKDVLAGPMRVPQLQRRRGNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNV 353
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BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA)

HSP 1 Score: 160 bits (405), Expect = 7.380e-40
Identity = 84/168 (50.00%), Postives = 119/168 (70.83%), Query Frame = 1 
Query:  130 VAQCFEQVPAMFFDQRFSLEDPAVFESAIMSVGTDQPERLAHYLDLVEVCLLKQISQRSNAFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRRRDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQNDLGKLQSLK 633
            + +CFE+VP+ FFD  F+L++PAVFE  +   G  Q ERL HYLDLVEV LL QIS RS+AF EGL+T+  L+  V+ ACT++ QLR  M R++ +V+   +RVPQL +R+ NL SL+  LE V  +++S+ AV+ LLAA+DY GALD+L+ A+R +  DL  +  L+
Sbjct:  221 LTRCFEEVPSTFFDPSFNLQEPAVFEKLVNGAGPMQQERLTHYLDLVEVSLLGQISARSDAFLEGLETTHALRKVVSQACTSVQQLRAAMARIESEVVTKAIRVPQLAQRQQNLMSLQGYLELVQSIERSKLAVEPLLAADDYSGALDVLEGARRALARDLSDMHCLR 388
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BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Match: W7U392_9STRA (Vacuolar protein sorting-associated protein 54 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U392_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.100e-31
Identity = 78/204 (38.24%), Postives = 117/204 (57.35%), Query Frame = 1 
Query:  118 GGGSVAQCFEQVPAMFFDQRFSLEDPAVFESAIMSVGTDQPERLAHYLDLVEVCLLKQISQRSNAFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRRRDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQNDLGKLQSLKHVTSYGLNEHTITIDPRSFPDLHDPCRHRASP 729
            G   +A+CF +VPA+FF + F L +PA+F+  ++    D  ERL+ YLD+VE CLLKQIS RS  FFE L T QD++  +A AC  + +LR  +  + Q  + G +R+P+L +R+ NLA+L   L  +  VQ+S   VQ+LL A D+LGALD+L+  +                   GL+EH+    P   P+L +  + +  P
Sbjct:   32 GAADLAECFREVPAIFFHRDFQLSEPALFDRVVIRATPDTQERLSQYLDVVETCLLKQISSRSQHFFEALITLQDVRDRLAQACGQVLRLRSGLHDIDQKTVRGMIRIPRLAQRKVNLAALLEKLRLLQDVQRSTTLVQSLLGAGDFLGALDVLEDGQ-------------------GLSEHSCVRLPLQQPELDEALKAQLVP 216
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BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Match: A0A7S2BIV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BIV8_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.650e-31
Identity = 73/165 (44.24%), Postives = 106/165 (64.24%), Query Frame = 1 
Query:  178 FSLEDPAVFESAIMSVGTDQPERLAHYLDLVEVCLLKQISQRSNAFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRRRDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQNDLGKLQSLKHVTSYGLNEHTIT 672
            FSL +P +FE  +     ++ E+L  YLDLVEVCLL+QIS R ++FFE L   QDLQ  V  ACT +  LR  ++ MQQ++++G M+VPQL RR+ NL +L + LEQV  V +++ AV+AL  AED+ GAL IL  A++     L  ++ + HV    L E+ ++
Sbjct:    3 FSLAEPIIFEKVVSDSPPERQEQLTQYLDLVEVCLLRQISSRQDSFFEALSNLQDLQLDVTQACTKVNTLRRGVRGMQQNMVSGTMKVPQLARRKSNLNALHSVLEQVLKVLEAKDAVEALFKAEDFAGALSILTEARKMTSESLHNVRCV-HVLDKQLMEYELS 166
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BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Match: A0A485KTS7_9STRA (Vacuolar protein sorting-associated protein 54 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTS7_9STRA)

HSP 1 Score: 116 bits (291), Expect = 6.930e-25
Identity = 66/182 (36.26%), Postives = 104/182 (57.14%), Query Frame = 1 
Query:  130 VAQCFEQVPAMFFDQRFSLEDPAVFESAIMSVGT---DQPERLAHYLDLVEVCLLKQISQRSNAFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRRRDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQNDLGKLQSLKHVTSYGLNEHT 666
            V QCFE VPA+FF   + L DPA F+  + S G    D  + L+HYLD VEV LL+Q+S RS+ FFE   +  +++  V  AC  +  LR  M R++  +    + + QL R++  L  L+  + Q+  ++ ++++V+AL+   DY GALD++ +A +T+Q   G    +  V S G   HT
Sbjct:  161 VQQCFEAVPALFFKAEYELTDPATFDQVVGSGGVSLQDTQDTLSHYLDRVEVSLLRQVSSRSDRFFEASSSQGEMKKRVTQACDQVKHLRTTMDRLRNSLADKSLAILQLHRKQKRLVELQDLMVQIEEMKHTESSVEALVHGHDYTGALDVIDTALKTIQGMAG----IHCVRSLGEKLHT 338
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BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Match: L8GXG3_ACACA (Vacuolar protein sorting-associated protein 54 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GXG3_ACACA)

HSP 1 Score: 114 bits (286), Expect = 3.290e-24
Identity = 67/181 (37.02%), Postives = 104/181 (57.46%), Query Frame = 1 
Query:  145 EQVPAMFFDQRFSLEDPAVFESAIMSVGTDQP----ERLAHYLDLVEVCLLKQISQRSNAFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRRRDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQNDLGKLQSLKHVTSYGLNEHTITI 675
            + VP ++F + FSL DP  FE    ++G+  P    E+L+HYLD+VEV L++Q+S RS +FF  L T QDL   VA  CT +  +R ++  +        + +  L+RRR N   +   L+ +A V+ +Q  +Q LL+  D+ GALD++ + +  + +DL  +QS KH TS  L E T  I
Sbjct:  107 QTVPKVYFQEDFSLSDPETFEQTCHALGSSSPVLLQEKLSHYLDVVEVELVRQVSMRSGSFFTALTTLQDLHHEVASTCTAISSVRHSLGTVSDAQAKKALNIVALRRRRQNCIVVYKKLKLIARVRAAQPTIQLLLSNSDFAGALDLIATTQAILASDLQGIQSFKH-TSLQLKEMTTLI 286
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BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Match: S4RLY6_PETMA (Vacuolar protein sorting-associated protein 54 n=3 Tax=Petromyzon marinus TaxID=7757 RepID=S4RLY6_PETMA)

HSP 1 Score: 110 bits (275), Expect = 8.360e-23
Identity = 71/196 (36.22%), Postives = 107/196 (54.59%), Query Frame = 1 
Query:  124 GSVAQCFEQVPAMFFDQRFSLEDPAVFESAI---------MSVGTDQP-------------ERLAHYLDLVEVCLLKQISQRSNAFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRRRDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQNDLGKLQSLKHVTS 645
            G      EQVP MF    F+LEDPA F + +           VG                 E+L+HYLD+VEV L +QIS RS+AFF+ +++ +D+Q H+  A  T+  LR  + R+   + +G +RV +L   R N ASL   L+ +A VQQ+Q  VQ LL+  +Y GALD++ + +  +Q +L  + S +H+ S
Sbjct:  102 GKQQSDLEQVPKMFLKPDFALEDPATFNTVLPWSQFGGAQQRVGARNAPAVPDGFSSRLLQEKLSHYLDVVEVNLARQISLRSDAFFQAMESQRDVQEHLRRAALTVRSLRSLVGRVDTVLASGSLRVLRLATARRNAASLHGKLKLMAAVQQTQPTVQLLLSTAEYSGALDLIATTQEVLQQELQGVHSFRHLGS 297
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BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Match: A0A7J0DVI4_9ERIC (Similar to VPS54 n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0DVI4_9ERIC)

HSP 1 Score: 105 bits (262), Expect = 1.170e-21
Identity = 66/189 (34.92%), Postives = 105/189 (55.56%), Query Frame = 1 
Query:  106 ERDLGGG---SVAQCFEQVPAMFFDQRFSLEDPAVFESAI----MSVGTDQPERLAHYLDLVEVCLLKQISQRSNAFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRRRDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQ-NDLGKLQSLKHVTSY 648
            E  +GGG   ++  C  QVPA+FF + F+LED A F +A     MS      E+L+ YLD+VE+ L+K+IS RSN+FFE     QDL   +   CT + +L+E ++ +  D++    R+  L   R NL +L+  L  +  V Q+ +A+  L+A+ D  GALD+    +  +  +DL  L   +H+  +
Sbjct:  130 ESIIGGGQGDALVACLRQVPALFFKEDFALEDGATFRTACPFSTMSENLVLQEKLSQYLDVVELHLVKEISLRSNSFFEAQGQLQDLNVKIVEGCTRIRELKETIRLLDADLVDSARRIHDLNATRSNLLALQQKLRLILYVNQALSALSLLVASADCAGALDVTDDLQHLLDGDDLTGLHCFRHLQDH 318
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BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Match: A0A388MDE1_CHABU (Vps54_N domain-containing protein (Fragment) n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MDE1_CHABU)

HSP 1 Score: 105 bits (261), Expect = 2.240e-21
Identity = 60/169 (35.50%), Postives = 100/169 (59.17%), Query Frame = 1 
Query:  115 LGGGSVAQCFEQVPAMFFDQRFSLEDPAVFESAI----MSVGTDQPERLAHYLDLVEVCLLKQISQRSNAFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRRRDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQND 609
            L G  +  C  ++P ++FD+ F+LE+P+VF++A     +       E+L+HYLDLVE  L+K+IS RS++FFE L   +DL   +  AC  +  LR  ++ +  D++    ++     RR+NL  L   L+ V+ V Q+Q  ++ L+A+ED  GALD++   KR ++ D
Sbjct:  208 LQGEGLVVCLREIPPLYFDEDFALENPSVFQAACPVASLPANLMLQEKLSHYLDLVEAQLVKEISARSDSFFEALGQLEDLNGKMVLACGQIKSLRTVVELLDGDLIESARQIQAHYVRRNNLLHLLQKLKLVSSVYQAQVTLRLLMASEDCAGALDVIDDLKRLLEGD 376
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13966.2421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYH6_9PHAE2.360e-8970.18Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0A0_ECTSI1.700e-8770.43Vacuolar protein sorting-associated protein 54 n=1... [more]
A0A835YJU9_9STRA7.380e-4050.00Vacuolar protein sorting-associated protein 54 (Fr... [more]
W7U392_9STRA1.100e-3138.24Vacuolar protein sorting-associated protein 54 n=2... [more]
A0A7S2BIV8_9STRA3.650e-3144.24Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A485KTS7_9STRA6.930e-2536.26Vacuolar protein sorting-associated protein 54 n=1... [more]
L8GXG3_ACACA3.290e-2437.02Vacuolar protein sorting-associated protein 54 n=1... [more]
S4RLY6_PETMA8.360e-2336.22Vacuolar protein sorting-associated protein 54 n=3... [more]
A0A7J0DVI4_9ERIC1.170e-2134.92Similar to VPS54 n=1 Tax=Actinidia rufa TaxID=1657... [more]
A0A388MDE1_CHABU2.240e-2135.50Vps54_N domain-containing protein (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13966contigH-paniculata_contig13966:1291..6793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.0
Seed ortholog evalue1.3e-63
Seed eggNOG ortholog2880.D7G0A0
Preferred nameVPS54
KEGG koko:K10357,ko:K17600
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000138,GO:0000139,GO:0000149,GO:0000938,GO:0001675,GO:0001894,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005795,GO:0005802,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006996,GO:0006997,GO:0007010,GO:0007034,GO:0007041,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0009272,GO:0009507,GO:0009536,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019725,GO:0019905,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030476,GO:0031090,GO:0031410,GO:0031505,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032588,GO:0032989,GO:0032991,GO:0033036,GO:0033363,GO:0034293,GO:0034613,GO:0040008,GO:0042147,GO:0042244,GO:0042546,GO:0042592,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043934,GO:0043935,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045103,GO:0045104,GO:0045184,GO:0045229,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048873,GO:0048878,GO:0050789,GO:0050879,GO:0050881,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055082,GO:0055088,GO:0060052,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070590,GO:0070591,GO:0070726,GO:0070727,GO:0070925,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071940,GO:0090156,GO:0097708,GO:0098588,GO:0098791,GO:0099023,GO:1903046
EggNOG free text desc.Vacuolar protein sorting-associated protein
EggNOG OGsKOG2115@1,KOG2115@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03019,ko03029,ko04131,ko04812
Exons6
Model size1069
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13966.2421.1prot_H-paniculata_contig13966.2421.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13966 1382..6634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.2351286-UTR-H-paniculata_contig13966:1290..13811622929109.2351286-UTR-H-paniculata_contig13966:1290..1381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13966 1291..1381 -
1691480735.1720154-UTR-H-paniculata_contig13966:1290..13811691480735.1720154-UTR-H-paniculata_contig13966:1290..1381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13966 1291..1381 -
1622929109.3151445-UTR-H-paniculata_contig13966:6634..67931622929109.3151445-UTR-H-paniculata_contig13966:6634..6793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13966 6635..6793 -
1691480735.2397995-UTR-H-paniculata_contig13966:6634..67931691480735.2397995-UTR-H-paniculata_contig13966:6634..6793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13966 6635..6793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.2474751-CDS-H-paniculata_contig13966:1381..17151622929109.2474751-CDS-H-paniculata_contig13966:1381..1715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 1382..1715 -
1691480735.182039-CDS-H-paniculata_contig13966:1381..17151691480735.182039-CDS-H-paniculata_contig13966:1381..1715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 1382..1715 -
1622929109.257225-CDS-H-paniculata_contig13966:2763..28731622929109.257225-CDS-H-paniculata_contig13966:2763..2873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 2764..2873 -
1691480735.1893716-CDS-H-paniculata_contig13966:2763..28731691480735.1893716-CDS-H-paniculata_contig13966:2763..2873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 2764..2873 -
1622929109.2668428-CDS-H-paniculata_contig13966:3502..36471622929109.2668428-CDS-H-paniculata_contig13966:3502..3647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 3503..3647 -
1691480735.1968877-CDS-H-paniculata_contig13966:3502..36471691480735.1968877-CDS-H-paniculata_contig13966:3502..3647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 3503..3647 -
1622929109.2800498-CDS-H-paniculata_contig13966:4097..41841622929109.2800498-CDS-H-paniculata_contig13966:4097..4184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 4098..4184 -
1691480735.2044437-CDS-H-paniculata_contig13966:4097..41841691480735.2044437-CDS-H-paniculata_contig13966:4097..4184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 4098..4184 -
1622929109.2920482-CDS-H-paniculata_contig13966:5531..56441622929109.2920482-CDS-H-paniculata_contig13966:5531..5644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 5532..5644 -
1691480735.2138615-CDS-H-paniculata_contig13966:5531..56441691480735.2138615-CDS-H-paniculata_contig13966:5531..5644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 5532..5644 -
1622929109.3039174-CDS-H-paniculata_contig13966:6604..66341622929109.3039174-CDS-H-paniculata_contig13966:6604..6634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 6605..6634 -
1691480735.2286553-CDS-H-paniculata_contig13966:6604..66341691480735.2286553-CDS-H-paniculata_contig13966:6604..6634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13966 6605..6634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13966.2421.1

>prot_H-paniculata_contig13966.2421.1 ID=prot_H-paniculata_contig13966.2421.1|Name=mRNA_H-paniculata_contig13966.2421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MFFDQRFSLEDPAVFESAIMSVGTDQPERLAHYLDLVEVCLLKQISQRSN
AFFEGLKTSQDLQTHVAGACTTLYQLRENMQRMQQDVLAGPMRVPQLQRR
RDNLASLETTLEQVAGVQQSQAAVQALLAAEDYLGALDILQSAKRTVQND
LGKLQSLKHVTSYGLNEHTITIDPRSFPDLHDPCRHRASPGGLEFTRFRV
CHGSGASGSVLSAHPALDVFVEHAMRSQGCLTAVRPPGMRTVSVLPPSSS
FPGTCCHGGTCSRRASTPLVAG*
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mRNA from alignment at H-paniculata_contig13966:1291..6793-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13966.2421.1 ID=mRNA_H-paniculata_contig13966.2421.1|Name=mRNA_H-paniculata_contig13966.2421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5503bp|location=Sequence derived from alignment at H-paniculata_contig13966:1291..6793- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATACGGACTGGGCCTCCGAAGGTTTCGCAACGAAACGGCGTCGCCTAA
TCCGTCCGGTGAGCGGTCGGTGGCGGTTAATGGGGGAGGGGAGAGGGGCG
GCGGGGAACGTGATCTTGGTGGTGGAAGCGTCGCCCAATGCTTTGAGCAA
GTACCTGCCATGTTTTTCGACCAAAGGTTTTCTCTCGAGGTGAGGTGGGC
GAAGTGAGCGGTGGGCTGTGTGTGTATGTGTGTTTGGTTCGTTTATTTTC
GCGTGCTTCGAGATATTTTTTGTATCTCTTGTGTATGTTCGGGTCGGTCG
GCAAGTAGTATGCACAAGAGATTGGTGTAGTGTGCTTCGAGTTGCTCTGC
TTTGATTCCATTTTGTGTTGTGAGGGCAATTAAGTTTTTTTGAGGCGAGG
TGCTCAACAAATATGAACTACGGTTAAAGTATCATTACTAGATACAGTAG
TTGGTTTTCTCTGATTCAGTCGAGCAGGGGGGTTGAGATTAGTCTTTGAT
GAAAATAATGGGTCATATGTCCTCTTGTGTCAATTGCGCTTGTTTTGGTG
TGTTTTCTGTGCATGAGTACATACGTGTATGCGTCTGTCTGTCTGTGTTC
GGCATTTGGTATTTGCGAACAACATGGTGTAAATTTTGGTTTATAATGCG
ATAGTCATTTTCGGGAAAAAAAAAACAAAAAAAAAAACGTTTCCTTGAGC
AAAATGCGATTTTGTATTCCTTGTGCTCGTTTGTGTGCGTTATTTAGATT
TAGCCGCCGGGGGGAGCTTTGTTGGTGTTACTAATCATGATGGTCGTTTA
GGAATTGATCCTTTGGTAGGACAGAGGGGATGAATCTTCGCCCGGGAGAG
GGAGGTGGGGTGCATTTTTCTTGGTTTATTTGTGCCGTCATTCCTCTCTT
TTTTGCTTCGACGGAGTAAAATCACCCCTCTTTGACCGCGCGTGCGGTCG
TCATGACTCCTTTTTGACCCCCACAAGATTCAGTCATCCAATGTTTTGAA
TACGAATACGACCCTGCATCGTTCATGTTGAAGCTCAAACGGTTGCGTAG
TTGATGAGATTTTTTTTTTTTTTTTGTCCCATTTTGTTTTTCGTAGGGTT
CTGCCATATGTCTTTTAGTTTTTCTTTGTTGTTTTTCATGTTTTTGCAGG
ATCCTGCGGTTTTCGAAAGCGCTATAATGTCGGTTGGTACGGACCAGCCG
GAGCGTTTGGCGCACTATCTGGATCTGGTGGAGGTGTGTCTCCTCAAGCA
GATATCGCAGCGGTGAGTAGTGATGTCTACTTGGAAACCGTTTTTCGTTA
TTGAATACATGCCTCTGTGCCACGACTAAACTCATTTTTTATTTTATTTT
TTTAACCCCGGGAAGGCTGAGGTAAAAACCTTTACCGATGCTTCCATACA
TACTAAACTCAGTTGTGATTCTAAAGGCACTTGACTGCCTCTGATTTTTG
TTTGTTCATGTATTACAATTTCGGAGGTTTGGGAGGTTAAACCCCAGCAA
ACCGGAATGCAATTCAACATAGCGCGTATTAATCTTATTTAAAAAAAAAA
AAAAACTTTCCGTCGGTATCAATAATATTCACCGACGTTCCGCAGAGGGT
GAAGTGTGATCCGCCAACAAGAGATGCCTTCCGTTATGGCGCATAGGAAA
AATTGCTCTGCAGTCTTTTTTTTTTTTTTTTTTTGCTTTTTTATCATCCG
ACAGACAAGTATCCAAACAGCAGTCAGCCATGGTATGGAAATGTCCGTAC
TACGAGCTACGTCGTTTTTTCTTCTTTTTTTTCGAGTGAAAGACGTTTTT
TTCTTCCCCCCTGATATGACAGAATATAATCAAATTAGGGGAATATTGAT
GGGGGGAAAAAAGTGTACTCGAAATAATAAAACCATCCCAGTTACTTTTT
TGATTCTGTAAGCACACGGTCATCTCACACTGTGTTGTGGTGTGGCGGGT
GTTCGTGACGGAATTTCTTTATTAGATAAAATAAATAACAGGAAAAAGGT
GTATGGATGTGTGATGACCATGGCGATGGTGGGTTCGGAAAAGTTTTTTG
TTCGAACGCTATCTGCAACACCTATCCAAACGCCTTGTTTTCATCGTGGA
GTTATTGTGGATGCCTGTGGGTTCTGGTTACAGTTTTGCTGCAGTATGTA
CCCGGTACTGTAGGCCAACCTTTTGGGGGGGGGAGGGGGGATTTTTCAAC
TTAATTTGACTGTCTGTGCCGAACCTTGAGGTGAATATTTATTTTTTAAT
TTTCGTAATGAATGCTCGAAGTAATCGGTAGTGGTTCGAGGGGTGAAAAT
ATTCAAATATATCCATCTGTGCCGAGTCCGGCTCCGCCCGGCTTCGCCCG
GTCTGGTTCAATTCGGTTCGGCTCGGTCCGCACACCAAACCGTGTATGCT
TTGATTCGCACCGTGGTTCTATGATGTTTGGTTCCCGATATGGATGATGG
TGATGACGACGACGACCGTAATTGCCCTTCCCCTCTGCGATTAAAGTAGC
GATAGCACCTGAAAAGGGGAACCCTTCATTGCTCAGCGCATAGAGTCAAG
GCTGATTCTCTGCAATATGCGATTATCCTCGACCGCCCACCCGGGCTTTT
CCGGTACAGGTCAAACGCGTTTTTTGAAGGGTTGAAGACCAGCCAGGATT
TGCAGACGCACGTAGCCGGGGCGTGTACGACACTTTATCAGCTCAGGTCT
GTCCCACGTGGTTCTCCCACGCACGGTATTTATGGAGTGAGTGGTGGATT
GGTTTTTTGTTGGGGTTTAAATGATTAGTATTTGTTTCGGTTTGTCAGAT
CGGAAACTCTAATGCCCCGGGGGCTTGTGCATTGGAGACCGGTGTTTACA
TGGGGGAACAAGAAGAACGTTTGGGTCAGTTTTGTCAGTCCAGGAATTCC
CATGGACCTACAAATATGTAAGAAGTAAGCTCCCACACTGAAAAGAGGTA
TTCGCCTCTCAACTGTTTTGGTTAAAGCTGTCCCGGGTTGTGGAATCTTT
TAAATGCCGCTCTTGTGTAGTGTGTTGTTATTCTCTCTGCCATCCCTCCG
CTTTCTTATTTTGATGTGGCAACGATGGCTTGCTAAAAAATGAGTACGCT
CTCCCTACGTGGCATACCGTGTTCGCCGTTGTCGTTTTGCCCACAGGGAA
AACATGCAACGCATGCAACAGGATGTACTGGCAGGGCCGATGCGCGTGCC
GCAGCTGCAGCGACGCAGAGATAACCTAGCTTCCTTGGAAACAACGCTAG
AGCAGGTTGCTGGAGTTCAGCAGTCGCAGGCAGCGGTGCAGGTACACATG
TATGAAATTAAGACGCTTTTTTTTTTTCAACAAAAAAAGAAAAATTCAGT
AGTAATTCTTCCGGTAAATCCGTCCAACTTAACCTGTTAAACGCCGATTC
CCCATCTGTAAATAGTTGTTATTTAATCTCTGCTAAGTACAAAACATGGG
AAAATGACGTTGATGGGATTAAGAAGTCACCCTTGTTCATTCAGATCGAC
AAGTATATACCAGGGCTCTTTACGTCACACATATTATCTTGGTTTTTGCG
TAGCGTGACATTCGTGAACGTCACGCTACGCAAAAATCAAGATAATATGT
GTGACGTTTTGTGACGTGAACAGCCCTGGTATATACAGCACAGACATGTA
GTTGAAGTGGTTTGGCCTATGATAACTGTAGCAGCTCGCGGTCGACATCG
TTTTTTTTTTTTTTTACTATTAATGACCTTTGGCATCGGAATTGTTATAT
ATAATAAAGTAGAAAATTTGTGGAGCATAATCCTTATAAAAGGGGTCGAA
TTGTTCTTTCGTGGTCTGTAAGCAAGGGCCTGTAGAGAACAAGTTCCTCT
TTTTACCACCTAGTGTGGCGACATAGATTATTCAATAACGGTGTACATGA
CCACCACCCTCTCAACAAAGGCGCTATTGGCGGCGGAAGATTACCTGGGG
GCGCTGGATATTCTGCAGTCGGCCAAGAGGACCGTCCAGAACGATCTGGG
CAAGCTACAGAGCCTCAAGCACGTCACCAGGTGTGCGCCGAAGAAAGCCT
TCCGCTCTGGTTGTATATATATATATATACATGTATTTTTTTCTTTCAGT
TTGCAATGGCGATCTAAATATCTAGAAACAGGTGAGGAATTTACACTTTG
ATTTGATTGGTCTAAGTATATGCAGCGAGCTAATAGAATCTATCTTGTTT
TTGTAATTTTGCGGTGGATTCATATTCTTGTTTCCAAAGTATTTTTCTTC
GAATCCTCACACTTGTCAGAGGGCAAACATGACACTCGGTAATAACATTG
TGAGGAGAACGTTCCTGAGGTTCCTGGGGTTCAACCGTGGTCTCTCATAC
TTCGCAGACAAGTTTCTGGAGCATAGTCACAACTTCTTGACGTGCTGCTA
TCCAAAAGCATGCCTTGCAAAAGAGGTAGCGCAATCCCCCCCGATTTGGT
CCAGCTTTGCTGGTAAGTGTAAATCGATAGATGAGGTTTGGGGTTGGCCA
GCTGCATAATCTCAAAATGGCATGATGAAGTTATAGTACCAGCTACCGTA
ATACCCTCTAACTTGGCACCCCTTCTTTGATCCGTACCTCTGTGCGATCT
GGACACGCCTGCTTTTTTGTTTTAGCACGCCCATACTTTTGAAGCGTACG
GGGGTGTGATCTTAAAGGGGGGTGTGCGCCTTTTTATACGAGGGGGGTGC
CCGGATAACGAGTATGTGGGTCCTCAAAAGGAACCGTTTTGAGGGATTAT
GTAGAGTTACCGTTATTTGCAAGACGTATCTAATCGACTACGGTCAGTGG
TGCACTACGACGACGGCTCACAGTACATTTATGGGCGTTCGCTCTTTACC
GTCATTTGGTCACTGAAGCCATGCATCAAATAATTGAAAAATATTCAGTT
CAATGGTTGTAGTCCCGGGAATAAACAAAGCAAAACCCTGACATACACTA
CGGCTCCAGAAACGTGAAATTTACAAAAAAAACAAATAAAAAAAACAAGA
TGAACAAGAAATCGAAAAACAGATGCAGCTAACAACACCTGCTTGGCGCG
GTCCTGTTCCTTCCGTCTATTGAAACAGTTACGGGCTGAACGAGCACACG
ATAACAATCGACCCCAGGTCGTTCCCAGACCTCCACGACCCATGTCGACA
CCGCGCCTCTCCCGGGGGGCTTGAGTTTACCCGTTTTCGGGTCTGCCACG
GTAGTGGTGCTTCAGGCAGTGTATTGTCCGCGCACCCCGCGCTTGATGTC
TTTGTTGAGCATGCGATGCGATCACAAGGTTGTTTAACCGCTGTAAGGCC
GCCGGGAATGAGGACGGTGTCCGTGTTGCCTCCTTCCTCAAGTTTTCCTG
GAACTTGTTGTCATGGTGGCACATGCAGCCGTCGAGCATCAACACCCTTG
GTCGCTGGCTAAACAAGCTTTTCCCCGGGCGACCCTTACCAGTTTTCTCG
TAGCCACAGCTCGGAGTGGCGATCGTCACACCAGCTGTTTTCGTGCACCC
CGT
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Coding sequence (CDS) from alignment at H-paniculata_contig13966:1291..6793-

>mRNA_H-paniculata_contig13966.2421.1 ID=mRNA_H-paniculata_contig13966.2421.1|Name=mRNA_H-paniculata_contig13966.2421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig13966:1291..6793- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTTCGACCAAAGGTTTTCTCTCGAGATGTTTTTCGACCAAAGGTT
TTCTCTCGAGGATCCTGCGGTTTTCGAAAGCGCTATAATGTCGGTTGGTA
CGGACCAGCCGGAGCGTTTGGCGCACTATCTGGATCTGGTGGAGGTGTGT
CTCCTCAAGCAGATATCGCAGCGGATCCTGCGGTTTTCGAAAGCGCTATA
ATGTCGGTTGGTACGGACCAGCCGGAGCGTTTGGCGCACTATCTGGATCT
GGTGGAGGTGTGTCTCCTCAAGCAGATATCGCAGCGGTCAAACGCGTTTT
TTGAAGGGTTGAAGACCAGCCAGGATTTGCAGACGCACGTAGCCGGGGCG
TGTACGACACTTTATCAGCTCAGGTCAAACGCGTTTTTTGAAGGGTTGAA
GACCAGCCAGGATTTGCAGACGCACGTAGCCGGGGCGTGTACGACACTTT
ATCAGCTCAGGGAAAACATGCAACGCATGCAACAGGATGTACTGGCAGGG
CCGATGCGCGTGCCGCAGCTGCAGCGACGCAGAGATAACCTAGCTTCCTT
GGAAACAACGCTAGAGCAGGTTGCTGGAGTTCAGCAGTCGCAGGCAGCGG
TGCAGGGAAAACATGCAACGCATGCAACAGGATGTACTGGCAGGGCCGAT
GCGCGTGCCGCAGCTGCAGCGACGCAGAGATAACCTAGCTTCCTTGGAAA
CAACGCTAGAGCAGGTTGCTGGAGTTCAGCAGTCGCAGGCAGCGGTGCAG
GCGCTATTGGCGGCGGAAGATTACCTGGGGGCGCTGGATATTCTGCAGTC
GGCCAAGAGGACCGTCCAGAACGATCTGGGCAAGCTACAGAGCCTCAAGC
ACGTCACCAGGCGCTATTGGCGGCGGAAGATTACCTGGGGGCGCTGGATA
TTCTGCAGTCGGCCAAGAGGACCGTCCAGAACGATCTGGGCAAGCTACAG
AGCCTCAAGCACGTCACCAGTTACGGGCTGAACGAGCACACGATAACAAT
CGACCCCAGGTCGTTCCCAGACCTCCACGACCCATGTCGACACCGCGCCT
CTCCCGGGGGGCTTGAGTTTACCCGTTTTCGGGTCTGCCACGGTAGTGGT
GCTTCAGGCAGTGTATTGTCCGCGCACCCCGCGCTTGATGTCTTTGTTGA
GCATGCGATGCGATCACAAGGTTGTTTAACCGCTGTAAGGCCGCCGGGAA
TGAGGACGGTGTCCGTGTTGCCTCCTTCCTCAAGTTTTCCTGGAACTTGT
TGTCATGGTGGCACATGCAGCCGTCGAGCATCAACACCCTTGGTCGCTGG
CTAATTACGGGCTGAACGAGCACACGATAACAATCGACCCCAGGTCGTTC
CCAGACCTCCACGACCCATGTCGACACCGCGCCTCTCCCGGGGGGCTTGA
GTTTACCCGTTTTCGGGTCTGCCACGGTAGTGGTGCTTCAGGCAGTGTAT
TGTCCGCGCACCCCGCGCTTGATGTCTTTGTTGAGCATGCGATGCGATCA
CAAGGTTGTTTAACCGCTGTAAGGCCGCCGGGAATGAGGACGGTGTCCGT
GTTGCCTCCTTCCTCAAGTTTTCCTGGAACTTGTTGTCATGGTGGCACAT
GCAGCCGTCGAGCATCAACACCCTTGGTCGCTGGCTAA
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