mRNA_H-paniculata_contig13938.2410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13938.2410.1
Unique NamemRNA_H-paniculata_contig13938.2410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Match: D8LEZ3_ECTSI (Vac14_Fig4_bd domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ3_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 6.080e-94
Identity = 191/237 (80.59%), Postives = 203/237 (85.65%), Query Frame = 2 
Query:  263 QALNLILLTASELEELRQALKGSTRADASVEDRDLFSALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAFKTLRDRMATACSLNQNLAALPSSSSAXXXXXXAVTST-------ARGERVQTAQSAL-RRGTKGRTQDLGLLLGKFKAAQERHVQRRREAVRSKSLQSDVSTSTGEK 949
            +ALNLILLTA ELEELRQAL+ STR+DAS EDR+LF+ALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQL+ESPIFL LRLQLLDVDSPSYP LLKSLYGILMLLPQS AFK LRDRMATACSL+QNLAALPSSS  XXXXXX            ARGERVQTAQ+AL RRG K  TQD+ LLL KFK AQ RHVQ RREA+R KSL S+ ST+T EK
Sbjct:  480 EALNLILLTAGELEELRQALRLSTRSDASPEDRELFAALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLIESPIFLRLRLQLLDVDSPSYPFLLKSLYGILMLLPQSAAFKILRDRMATACSLHQNLAALPSSSXXXXXXXXXXXXXXXXXXXXARGERVQTAQTALTRRGKK--TQDVSLLLSKFKTAQGRHVQARREAIRKKSLHSEASTTTAEK 714
[Close]
BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Match: A0A7S2SDA7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDA7_9STRA)

HSP 1 Score: 204 bits (520), Expect = 8.270e-58
Identity = 124/227 (54.63%), Postives = 151/227 (66.52%), Query Frame = 2 
Query:  263 QALNLILLTASELEELRQALKGSTRADASVEDRDLFSALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAFKTLRDRMATACSLNQNLAALPSSSSAXXXXXXAVTSTARGERVQTAQSALRRGTKGRTQDLGLLLGKFKAAQERHVQRRREAVRSKSLQSDVSTSTG 943
            Q LNLILLTA+EL  LR  LK S +  A+ EDR +FS LF CW HNPVAT SLCLLAQAYD+++ LV+  AEVEITVG LMQ+DKLVQLLESPIF+ LRLQLL+VD+P +PALLKSLYG+LMLLPQSTAF+TL DR+AT  SL Q+L                   +  G R   A S   +  K RT+D   LL +F+  Q +H      A+ S+SL++     TG
Sbjct:   20 QTLNLILLTATELSALRDTLKHSFQPTANAEDRAVFSQLFMCWSHNPVATLSLCLLAQAYDLASSLVQRFAEVEITVGLLMQIDKLVQLLESPIFVQLRLQLLEVDAPYHPALLKSLYGLLMLLPQSTAFRTLSDRLATVSSLQQHL-------------------STSGSRAAAAPS---KKEKARTEDYQELLQQFERIQAKHGAAHHAAIDSRSLRAAKQPGTG 224
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BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Match: A0A835YJ67_9STRA (Vacuolar protein 14 C-terminal Fig4p binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ67_9STRA)

HSP 1 Score: 214 bits (545), Expect = 6.310e-57
Identity = 108/148 (72.97%), Postives = 134/148 (90.54%), Query Frame = 2 
Query:  263 QALNLILLTASELEELRQALKGSTRADASVEDRDLFSALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAFKTLRDRMATACSLNQNLA 706
            Q+LNLILLTA+EL+E+R+ALK S + +A+ ED  +F++LF+CWCH+PV+TFSLCLLA+AYD+SA +V E ++VE+TVGFLMQVDKLVQLLESPIFLHLRLQLLDV +PSYPAL+KSLYG+LMLLPQS AF+TLRDR+  AC+L QNLA
Sbjct:  484 QSLNLILLTAAELDEVRRALKASFQPNAAPEDTQVFASLFSCWCHSPVSTFSLCLLAKAYDLSAAVVSEFSDVEVTVGFLMQVDKLVQLLESPIFLHLRLQLLDVSAPSYPALVKSLYGLLMLLPQSAAFRTLRDRLDAACALRQNLA 631
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BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Match: A0A7S2F1M7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F1M7_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.390e-56
Identity = 127/226 (56.19%), Postives = 156/226 (69.03%), Query Frame = 2 
Query:  263 QALNLILLTASELEELRQALKGSTRADASVEDRDLFSALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAFKTLRDRMATACSLNQNLAALPSSSSAXXXXXXAVTSTARGERVQTAQSALRRGTKGRTQD-LGLLLGKFKAAQERHVQRRREAVRSKSLQSDVSTS 937
            Q LNLILLTA EL  LRQ LK S +  AS +DR +F++LF CW HNPVAT SLCLLAQAYD+++ LVK+ AEVEITVGFLMQ+DKLVQLLESPIF+ LRLQLL+VD+  +PALLKSLYG+LMLLPQSTAF+TL  R+AT  SL Q+L    +S                GE  QT Q    R    + +D    LL  F+  QERH + R+EA++++SL +   TS
Sbjct:   85 QTLNLILLTALELSGLRQVLKNSFQTSASTDDRTVFASLFHCWSHNPVATLSLCLLAQAYDLASSLVKKFAEVEITVGFLMQIDKLVQLLESPIFIQLRLQLLEVDASYHPALLKSLYGLLMLLPQSTAFRTLSARLATVSSLQQHLGRASASPGPGYFQS--------GE--QTTQE--NRQIVSKFEDPAAALLRDFEVVQERHARARQEALQNRSLHTTKVTS 298
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BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Match: A0A7S2G2H9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2H9_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.590e-55
Identity = 123/228 (53.95%), Postives = 152/228 (66.67%), Query Frame = 2 
Query:  263 QALNLILLTASELEELRQALKGSTRADASVEDRDLFSALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAFKTLRDRMATACSLNQNLAALPSSSSAXXXXXXAVTSTARGERVQTAQSALRRGTKGRTQDLGLLLGKFKAAQERHVQRRREAVRSKSLQSDVSTSTGE 946
            Q LNLILLTA EL  LR  LK S +  AS EDR +F+ALF CW HNPVAT SLCLLAQAY +++ LV++ AEVEITVGFLMQ+DKLVQLLESPIF+ LRLQLL+VD+P +PALLKSLYG+LMLLPQSTAF+TL DR+AT  SL Q+L                      G   + AQ     G   +  +   LL  F+  QERH + R++A++++SL +     T E
Sbjct:   82 QTLNLILLTALELTGLRHILKSSFQESASSEDRAVFTALFNCWSHNPVATLSLCLLAQAYGLASALVQKFAEVEITVGFLMQIDKLVQLLESPIFIQLRLQLLEVDAPYHPALLKSLYGLLMLLPQSTAFRTLSDRLATVSSLQQHLG---------------------GGASRAAQ-----GKAAKPDEYTSLLLHFEQVQERHSRARQDALQNRSLHALGKAETSE 283
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BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Match: A0A7S2UZK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZK8_9STRA)

HSP 1 Score: 179 bits (454), Expect = 4.000e-49
Identity = 101/188 (53.72%), Postives = 131/188 (69.68%), Query Frame = 2 
Query:  353 EDRDLFSALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAFKTLRDRMATACSLNQNLAALPSSSSAXXXXXXAVTSTARGERVQTAQSALRRGTKGRTQDLGLLLGKFKAAQERHVQRRREAVRSKSL 916
            E R +F+ALF+C+CHNPVATFSLCLLAQAY ++A LV + ++VEITVGFLMQ+DKLVQLLESPIF+HLRLQLL+VDS  YPAL+K+LYG+LM+LPQS AF+TL +R++TAC+L Q L+A PS                       A +  +R  +   ++ G LL  F   Q  H + R+E + SKSL
Sbjct:    5 EKRRVFTALFSCFCHNPVATFSLCLLAQAYHLAASLVNKFSQVEITVGFLMQIDKLVQLLESPIFMHLRLQLLEVDSQEYPALIKALYGLLMILPQSAAFRTLAERLSTACALQQTLSACPS-----------------------ADNTQKREFQKAQKESGELLQTFDTVQLMHARARKEVLASKSL 169
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BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Match: A0A812QKX0_SYMMI (Vac14 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QKX0_SYMMI)

HSP 1 Score: 179 bits (453), Expect = 1.210e-47
Identity = 97/148 (65.54%), Postives = 116/148 (78.38%), Query Frame = 2 
Query:  263 QALNLILLTASELEELRQALKGSTRADASVEDRDLFSALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAFKTLRDRMATACSLNQNLA 706
            Q LNLILLTA EL  LR+ L+       S  D D+F+ LF CW HNPVATFSLCLL+Q YD+SA+LV + AEV++TVGFLMQ+DKLVQL+ESP+F+ LRLQLLDVDS  +  LLKSLYG+LMLLPQS A+KTL DR+AT  SL  +LA
Sbjct:   71 QTLNLILLTAPELSPLRKTLQDCVLQPQS--DEDIFTILFKCWSHNPVATFSLCLLSQTYDLSADLVHKFAEVDVTVGFLMQIDKLVQLIESPVFIRLRLQLLDVDSTFHADLLKSLYGLLMLLPQSQAYKTLSDRLATVSSLKMHLA 216
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BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Match: A0A2P4XNC4_9STRA (VAC14 family protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNC4_9STRA)

HSP 1 Score: 174 bits (442), Expect = 4.900e-47
Identity = 103/224 (45.98%), Postives = 141/224 (62.95%), Query Frame = 2 
Query:  263 QALNLILLTASELEELRQALKGSTRADASVEDRDLFSALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAFKTLRDRMATACSLNQNLAALPSSSSAXXXXXXAVTSTARGERVQTAQSALRRGTKGRTQDLGLLLGKFKAAQERHVQRRREAVRSKSLQSDVST 934
            Q LNLILLTA+ELE LR  L+ S +  AS +D  +F+ALF  WCHNP+A FSLCLLAQ+Y VSA L+ + A+++ +VGFLMQ+DKLVQLLESPIF+H+RLQLL++    +  L+KSLYG+LMLLPQS AF+ LRDR+A+  S+   +  +  +  A            R  R+                D   LL  F++ Q +H + RR+ +  KSL  + +T
Sbjct:    3 QTLNLILLTANELEHLRDILRRSFQPRASEDDVQVFTALFRSWCHNPIAAFSLCLLAQSYSVSAALISKFADIDASVGFLMQIDKLVQLLESPIFIHMRLQLLEIQEDYHTDLVKSLYGLLMLLPQSAAFRVLRDRLASVTSMATAIGRIDLNGDARRL---------RAPRI----------------DADALLAHFESVQAKHTELRRKGMYEKSLAKEQNT 201
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BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Match: A0A7S1C269_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C269_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.680e-46
Identity = 95/147 (64.63%), Postives = 120/147 (81.63%), Query Frame = 2 
Query:  263 QALNLILLTASELEELRQALKGSTRADASVEDRDLFSALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAFKTLRDRMATACSLNQNL 703
            Q LNLILL+A+EL ELR  LK S + +A  + RD F++LF CWCHNPVATFS CLLAQAYDV+  LVK+  E+E++V FLMQ+DKLVQ++ESPIF+H+RLQLLDV+ P +  LLK+LYGILMLLPQS A++TL DR+AT C+L  +L
Sbjct:  761 QTLNLILLSAAELHELRSLLKESFQKNAPFQARDTFASLFPCWCHNPVATFSFCLLAQAYDVAFALVKKFTELEVSVSFLMQIDKLVQIMESPIFVHVRLQLLDVEEPHHSPLLKALYGILMLLPQSDAYQTLNDRLATVCNLRDHL 907
[Close]
BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Match: F0YIP2_AURAN (Vac14_Fig4_bd domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIP2_AURAN)

HSP 1 Score: 185 bits (469), Expect = 2.860e-46
Identity = 96/147 (65.31%), Postives = 120/147 (81.63%), Query Frame = 2 
Query:  263 QALNLILLTASELEELRQALKGSTRADASVEDRDLFSALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAFKTLRDRMATACSLNQNL 703
            Q L+LILLTA EL+ELR+ L+ S   +AS E  +LF  ++ CWCHNPVAT +LCL+AQAYD+++ LV + AEV++TVGFLMQVDKLVQLLESPIF+ LRLQLL+V +P +P LLKSLYG+LMLLPQSTAF TL  R+AT  +L Q+L
Sbjct:  497 QTLSLILLTARELDELRELLRSSLEPNASSEATELFIIMYGCWCHNPVATLALCLMAQAYDLASSLVTQFAEVDVTVGFLMQVDKLVQLLESPIFIQLRLQLLEVRAPYHPLLLKSLYGLLMLLPQSTAFTTLSTRLATIATLQQHL 643
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13938.2410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ3_ECTSI6.080e-9480.59Vac14_Fig4_bd domain-containing protein n=2 Tax=Ec... [more]
A0A7S2SDA7_9STRA8.270e-5854.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YJ67_9STRA6.310e-5772.97Vacuolar protein 14 C-terminal Fig4p binding-domai... [more]
A0A7S2F1M7_9STRA3.390e-5656.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2G2H9_9STRA1.590e-5553.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UZK8_9STRA4.000e-4953.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812QKX0_SYMMI1.210e-4765.54Vac14 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A2P4XNC4_9STRA4.900e-4745.98VAC14 family protein n=1 Tax=Phytophthora palmivor... [more]
A0A7S1C269_9STRA1.680e-4664.63Hypothetical protein (Fragment) n=2 Tax=Corethron ... [more]
F0YIP2_AURAN2.860e-4665.31Vac14_Fig4_bd domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13938contigH-paniculata_contig13938:2..5732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue1.8e-43
Seed eggNOG ortholog2880.D8LEZ3
Preferred nameVAC14
KEGG koko:K10875,ko:K15305
KEGG Pathwayko03440,ko05166,ko05203,map03440,map05166,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005942,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007267,GO:0008047,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009628,GO:0009893,GO:0009987,GO:0010008,GO:0010562,GO:0012505,GO:0016020,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019637,GO:0019898,GO:0023052,GO:0030154,GO:0030234,GO:0030674,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031410,GO:0031901,GO:0031902,GO:0031982,GO:0031984,GO:0032502,GO:0032991,GO:0033674,GO:0035032,GO:0038023,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045165,GO:0045168,GO:0045937,GO:0046331,GO:0046474,GO:0046486,GO:0046488,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051338,GO:0051347,GO:0051716,GO:0060089,GO:0060090,GO:0061695,GO:0065007,GO:0065009,GO:0070772,GO:0071704,GO:0090407,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098852,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.phosphatidylinositol biosynthetic process
EggNOG OGsKOG0212@1,KOG0212@2759
Ec32 ortholog descriptionVacuole morphology and inheritance protein 14
Ec32 orthologEc-21_006110.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons5
Model size2035
Cds size450
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929107.1509163-UTR-H-paniculata_contig13938:1..5031622929107.1509163-UTR-H-paniculata_contig13938:1..503Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13938 2..503 +
1691480734.153263-UTR-H-paniculata_contig13938:1..5031691480734.153263-UTR-H-paniculata_contig13938:1..503Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13938 2..503 +
1622929107.3402214-UTR-H-paniculata_contig13938:4618..47211622929107.3402214-UTR-H-paniculata_contig13938:4618..4721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13938 4619..4721 +
1691480734.2421062-UTR-H-paniculata_contig13938:4618..47211691480734.2421062-UTR-H-paniculata_contig13938:4618..4721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13938 4619..4721 +
1622929107.3612876-UTR-H-paniculata_contig13938:4752..57321622929107.3612876-UTR-H-paniculata_contig13938:4752..5732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13938 4753..5732 +
1691480734.2528243-UTR-H-paniculata_contig13938:4752..57321691480734.2528243-UTR-H-paniculata_contig13938:4752..5732Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13938 4753..5732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929107.1648264-CDS-H-paniculata_contig13938:503..5091622929107.1648264-CDS-H-paniculata_contig13938:503..509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13938 504..509 +
1691480734.1810846-CDS-H-paniculata_contig13938:503..5091691480734.1810846-CDS-H-paniculata_contig13938:503..509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13938 504..509 +
1622929107.19467-CDS-H-paniculata_contig13938:1283..14151622929107.19467-CDS-H-paniculata_contig13938:1283..1415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13938 1284..1415 +
1691480734.1948304-CDS-H-paniculata_contig13938:1283..14151691480734.1948304-CDS-H-paniculata_contig13938:1283..1415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13938 1284..1415 +
1622929107.2643566-CDS-H-paniculata_contig13938:2352..25291622929107.2643566-CDS-H-paniculata_contig13938:2352..2529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13938 2353..2529 +
1691480734.2142286-CDS-H-paniculata_contig13938:2352..25291691480734.2142286-CDS-H-paniculata_contig13938:2352..2529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13938 2353..2529 +
1622929107.3206077-CDS-H-paniculata_contig13938:4483..46181622929107.3206077-CDS-H-paniculata_contig13938:4483..4618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13938 4484..4618 +
1691480734.2249846-CDS-H-paniculata_contig13938:4483..46181691480734.2249846-CDS-H-paniculata_contig13938:4483..4618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13938 4484..4618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13938.2410.1prot_H-paniculata_contig13938.2410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13938 504..4618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13938.2410.1

>prot_H-paniculata_contig13938.2410.1 ID=prot_H-paniculata_contig13938.2410.1|Name=mRNA_H-paniculata_contig13938.2410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQSTAF
KTLRDRMATACSLNQNLAALPSSSSAASSSASAVTSTARGERVQTAQSAL
RRGTKGRTQDLGLLLGKFKAAQERHVQRRREAVRSKSLQSDVSTSTGEK*
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mRNA from alignment at H-paniculata_contig13938:2..5732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13938.2410.1 ID=mRNA_H-paniculata_contig13938.2410.1|Name=mRNA_H-paniculata_contig13938.2410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5731bp|location=Sequence derived from alignment at H-paniculata_contig13938:2..5732+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTACCCGTTCGGG
CGTAGGTCCGTGGAATGATCAACATGTGCATAAAATATGCTTGCTTCAAT
ATATATATATATATATTAAAATCAAAGCATAACATCGTCCTGTTTACCTC
TTCCTCTCTTTCTATGTATCCCTTTTTAAATGTGTTACAATCATTTTTTT
TTATTTTTTATCTCACACACGTGATGTCTGGTCTTATCTGATCTCATCTG
CCGAAACAAGAGCAGGCACTCAATCTCATCCTGCTCACAGCGTCGGAGCT
CGAAGAGCTGCGACAGGCGTTGAAAGGGTCCACCCGCGCAGATGCCTCCG
TGGAGGATAGAGACCTGTTCTCGGCACTTTTCGCGTGTTGGTGCCATAAT
CCAGTGGCCACTTTTAGCCTTTGTCTGTTGGCACAGGCGTACGATGTGTC
TGCGGAGCTCGTGAAGGAGGTGGCAGAAGTGGAGATTACGGTTGGCTTCC
TTATGCAGGTGTTGTGTTTGGGTGTACTGTGTACTGTGTGATGAGGAGTT
GCGGTTTTAGAGATGGAAAAACGTTTTTGGGGAATAAGTATGACGACAAG
TAGTCAACCACAGGTTAGCTTGCAAGTTTGGCTGTGCTGTTAAGTTGGTC
GTGTCGGCGTTCGCTGAAATAGTGACTACATGACGGCAAAAAGGCCGTAA
TTCAAAATTGACAAAATAATGAATTTTTTACGCTTACTTGGAGGGAGTGA
AGAATGAGACCGAGATGGCACGCACAGCCCAAGAGTCCGATCCTGTAGTC
GAAATCACTGTTGGTGGTCTGCTACTGATGGGAGCTTGTCGTTGCGGAGC
AACCCGACGGGAGGTGGGTGTGTATATTTAACCTCAAAACCGACCAAGAT
CCGCAATGCTATCCGTCAGACATGTTGCACGTTCGAATATTTCGACTTGG
TGAAGAAGGCAAGAGCACATGAAAAATATATATATATATATATTCCCAGT
CATGCTTGAAATTGCTTTTTTGGACGGAGGGGGGGGGGGGGTTAAACGAG
GCTGACTGACAGGTAGGTGTCCCATGGTTGTATTTACTCTAACAACCACT
ACTGATTGTTAATGAATGTTATTCATCGAGGATCCTCTATCAACTTGGTG
CGATTTGTCATCCCTTGTGTTTTTATTTTATTGTTTTTTTTAATGTTTTT
ACTCTCGCTATTGCTTGTTTAGCTGCTGCTGCTGCTGCTGCTGTATACCT
TGTATGCTTGGTGCGGTGCCTTTTTTTTGTAGGTGGACAAACTCGTACAA
TTGCTGGAGTCTCCCATATTCTTGCACCTCCGGCTGCAGCTCCTAGACGT
TGACTCACCTTCCTACCCCGCGCTGTTGAAGAGCTTGTACGGGATCCTCA
TGCTCCTGCCCCAGGTATACTGTACATGATACAAATATATAGGCTTCCCT
GGTGCCGTAAGTATACTCGATTATGTGTGTACAGTACATTGATAGTGATG
AGCGATACTTAAAGTGTTGCACGGGAATCCTGAAAAGTCAGTCAGTAGAG
TTCCCCGAAGTAATATATTATCGTGCACGGTTGGTACGTAGGCTGTGAGA
CACAATGACTTAGGCCCTTCGAAGAAAAACTTTCGACCATGTTTTGGCCA
TAGGGTATGCCTTTGATCCTCGTACGTTTAGTGTAACGCTGATTATGTCA
TAGTCCTTTTCGCCCAGTCCTTCTCCCGAGGATAGTCCTGATGACTATGG
ACTGCGTAAACAATTGCCGTATGAAACACCCGTTTATTTCTGTTGAAATA
ATTAGAAGTAATTTTTATTTATATGCTTGGTGTAAGGTGGCGCCTACCCC
GCAGAGGAAAAAATAACTCTGTTCTGTTAAAGGAAATGTAGACATACTTT
GGTAAAATACTTGAGTATGGAAGCATCGGTAAAGGTTTTTGCCTCAGCCT
TCCGGGGGTTAACCCCCCCCCTCCCCCCCCAAAAAAAAAATGCTTGGTGT
AAGAGTGTAGGGGTTAACAATACTTGTCTCTCAAAATTGTTTCACTGATT
GAGGTCCGGCGTTACTAATGTGCTTGGCTATTTGTACTATTTCAACTTGA
GTCTGTTGTGTCTGCGACACACGCGAGTAATATCCCCCCCCCCCGCCCCC
TCTCCCGAGGATGCGTGGTCCATGGTGTAACAGCTACGGCATGTGGAAAA
GATGAGTACGCCCCCCGTATTGGTCATTATCTTATTTTGCTGGTTAACCT
TAACGTAGGTATCATGCAGTGTTAGAGCGATATTGTCACTAACTGTATCC
CCCCCTTGTCCCAATTTTCTTTTTTGGTCTCGGCCGTCGTTTCGTTTGTA
GTCCACCGCATTCAAGACACTCCGGGATCGCATGGCGACAGCTTGCTCTC
TGAACCAAAACCTAGCGGCGCTACCTTCGTCCTCGTCGGCCGCCTCTTCC
TCCGCCAGTGCTGTGACCAGTACAGCGAGAGGGGAGCGCGTTCAGACGGC
GCAGTCCGCCTTGCGACGAGGAACCAAGGTACGAACTTGAAAACGTCTCG
CCTTATGTTTTGGAGAGCCGGAAGGAAACACAAATTAGCGTGAAGTTACT
GTTTGATGAGTCGGACGGATTCGATTGAAATTGCTAATGTTGTCGTTCAT
GGATTCGTCCACCCGGTAGTACAGGTTGTCAGTTCGTCATTTGTTATGGT
GCTCACATCATTTGTGCTGGAATTTTTACCTATGCGTGTTTTGTGTTCCT
GGTCGTTGTCCAGATGTAACGCCCCCCGAGATAGGGCATAGACAAGGGTT
CAGTCGATATAGTTCGGTAGTAGATCCAGTTTGTTGTAAAATGTGCCCGA
GCGCTGATGGCATTCGCGTGGTGACCCCAAAAGGTTTTCGACAGTGATGG
ATTCATAGGTCTAACCGAGGGCGTGCTTTACAGCTCAAAATGAGTGTCAC
GTTAACGTTGAGACGTTGTGGTCGTTTTGGTGATGGAACCAACAATGATT
TGATGACACACGCCTCTCTGAACTCAAGTGTGTGTGTGTGTGTATTTGTG
TGTGTTTCTCTCTTGCACGCATTCGTTATGGCTATTAAATGGAGAGCAAA
TCTTGTTTAGGGAGAGGTAGCACGATTGAAACCCCCCCCACTCCCTTTTT
TCTTGTGAGGCCAAAAGACTGGAGCCAGCATCTGACAAGGTATGAAAATA
AAACAATAATGATACGTTGCTGCAATCACAAGGTGTCAATACAAACAACG
TGTCCACCGGTCACGTCTTGAGCTACATCATGCTACGAATGCTACCAACC
TCATAAACGTGCTGTTTAGGACGACGGGGAAGCGTCAAGTGAATCACTGA
CCGACACCATTGTACTCGAACCTAATCCTAACGATTTGTTTTGACTTGCT
TCTTACCTCAGCTTGTCTTGTCTTGGTGATAATTTTACACAGCTGAATTT
TTAGGTCGGTAGCATTATCTCAATATGCTCAGTATAGGCACAATGGCATC
ATGGTTTAGATGTATGCCACTAGTATATGTAGCCATATCCAAGTAGGTTG
AGTTATTATGAATTAGACCTTGAATATGGATGAATCAGTGAATGAAAGAG
GTATTTATTTCCTTTCTGTCAGGTGTTTGTTCGTTTGCAGATGGAGAAAA
TGTCTACTACGCACAGTGCAAATGCGAGTGATGCAGCAATTCTCCCTTGC
GAAGCCAGTAAACAGTACTCCATGTTATGCCTGTTCGAAGGGGTGCAAGA
AGTCTTGGTACTTGGGTAGTGATAAGGTCAAGACTCATGTATGTCATGTT
GAACTTTACGCAGTGCAACCGAACATCGTTGAAGTCTATTTGGAATTCAG
TTAATCTGGAGGGCGCGGTTGTGCATGAGTTTGTAAGAGTGCTGATGATA
GGAGAGTAAGCACTTCTTCATGTACAGCTCTCTCGGGGATTCTGTAGTCT
AATTTATCACAATGGGGTTAGCTAGGCCGCCAGACTATGGCTAGCATTCC
AAAACACGACTGCACTATGGTTACAGGAGGCTAGCTATACAATAAACGTT
CGGTCCCCCCCCCCCTCCCTATTTGCGGTTCTATCTGCTGTGCTCGCTTG
CTTTGATAATTGTCTCGCAACTTCAAGCCGTTTGGTCGTCGTATCTGTGA
GTCATGAAAAAGTATCCGGACAGAGCAGCATGAGTAATATTTGACACGTG
AGAATAGACTTTTAACACGTTAGTCTTGTTCTTTGTTTTTTTTTCTAATT
TTACTGATGAGCAGCCCACATAGCTGAGCTTTGAGGTTAGCTGCATGACC
TCAGCAGGGGGTAGGAGGAAGTTGTTACATGACCGTTATAGATGCATTTA
CTGTGGTGAGTGAGTCGACTTGTGTATAACCGTTGGTGAGTGCACGGGGT
ATTTCATTTCTGTCAGGTGATCGCGTCCAAGTCAGGTCAGGTCATGTCTA
CCTCCCCCACCCCTCCCTCCCTCTGTTTGCAGGGAAGAACCCAAGATTTA
GGACTCCTGCTAGGAAAATTCAAGGCGGCACAGGAACGGCACGTGCAGAG
GAGGCGAGAAGCTGTTAGATCCAAGAGCTTGCAGAGTGATGTCAGCACCA
GCACTGGCGAAAAGTAGAAGAGTAGTTGATTGGTCGAATATGGTTTTGTT
TTCAGTACATCGGTAGCAACAATGCGTATTTGACGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTTTGGCTTGGA
GTTGTGTTCGTTGGCGCAGCCTCGTCAAATATTTGAGCCGATTCATTTTG
TCAGGCTGCTGTTTTTGTGCCCATCTACGCCATACCCCTCCTTATGTTCC
GCCATCTTTTAGTTGTGGGGTGCACATGAACACCTTGCCTCAGAGACGTT
TCCAGCGCGAGGTGCTGTAGAAAGTCTATAGGATGGGAAATATGTCGGCA
TGCCATTGGACCGTCTTGTCAAGCTGTTCTCTGTACGGAGCATATGATGA
GGCTCTCTGTGGATTTCCCGATACACCGTCTGTTTTGTGGTGGAAGTTAT
GTTATCGAGATCTGTCATGGTTGTGAGAGGAAGTATGCTTGGCCGCGGCA
TAGATCTATGATCGAAAATACTTGGAGAGGTAGAGCAGTAAGGGTGTGGC
GGAAGCAATATCTGGACATGGGAGACGTGATTGTTTGCGTGCTGTTTTGT
TTTTTGTTGGTATGGTGAAATTAAATTATTCCGATTTGGAAAAATTCCAC
AATCAGACAACTACGGACCCAAAATATTTCTCTCTGTTTTTATTATGGTA
TGGTCAGCTGTACCCGCTTACTGTAGTATTTTGTAGCATTGTCTATAGTA
GGGTCATTTACCAGGCTGAGGAATTTATTTCGGTGTCTCTGAATCATGTC
ACTTTTGTTACAGATTATTGGTTCTATCACCTTAATGCATTATTATTCAC
TATCAAGGTCTTCTAGGCCCGTTGGTGACTGGGCTGCAAGAATAACGCCT
CGGTCCTTGTCTCTTGTTCCCGCGGTGAGGGCATGCATGCGCCGCACTCG
CTCGCCAATGTTGGAAATATTAGCCGTGGTCTACTCCCACTGAGAATCGA
ACATTTGCCGCAGAAAATTGGGGAAAACAAGAAGAAAAAGTACACGAATA
TAAGTGCGAGCACCTATTCCCTTGCTCTCTCCTTTGGGTTATCGTTTGTA
TTTATGTCATACTCTAGTCGCCAGTCAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13938:2..5732+

>mRNA_H-paniculata_contig13938.2410.1 ID=mRNA_H-paniculata_contig13938.2410.1|Name=mRNA_H-paniculata_contig13938.2410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig13938:2..5732+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGATGCAGGTGGACAAACTCGTACAATTGCTGGAGTCTCCCATATT
CTTGCACCTCCGGCTGCAGCTCCTAGACGTTGACTCACCTTCCTACCCCG
CGCTGTTGAAGAGCTTGTACGGGATCCTCATGCTCCTGCCCCAGGTGGAC
AAACTCGTACAATTGCTGGAGTCTCCCATATTCTTGCACCTCCGGCTGCA
GCTCCTAGACGTTGACTCACCTTCCTACCCCGCGCTGTTGAAGAGCTTGT
ACGGGATCCTCATGCTCCTGCCCCAGTCCACCGCATTCAAGACACTCCGG
GATCGCATGGCGACAGCTTGCTCTCTGAACCAAAACCTAGCGGCGCTACC
TTCGTCCTCGTCGGCCGCCTCTTCCTCCGCCAGTGCTGTGACCAGTACAG
CGAGAGGGGAGCGCGTTCAGACGGCGCAGTCCGCCTTGCGACGAGGAACC
AAGTCCACCGCATTCAAGACACTCCGGGATCGCATGGCGACAGCTTGCTC
TCTGAACCAAAACCTAGCGGCGCTACCTTCGTCCTCGTCGGCCGCCTCTT
CCTCCGCCAGTGCTGTGACCAGTACAGCGAGAGGGGAGCGCGTTCAGACG
GCGCAGTCCGCCTTGCGACGAGGAACCAAGGGAAGAACCCAAGATTTAGG
ACTCCTGCTAGGAAAATTCAAGGCGGCACAGGAACGGCACGTGCAGAGGA
GGCGAGAAGCTGTTAGATCCAAGAGCTTGCAGAGTGATGTCAGCACCAGC
ACTGGCGAAAAGTAGGGAAGAACCCAAGATTTAGGACTCCTGCTAGGAAA
ATTCAAGGCGGCACAGGAACGGCACGTGCAGAGGAGGCGAGAAGCTGTTA
GATCCAAGAGCTTGCAGAGTGATGTCAGCACCAGCACTGGCGAAAAGTAG
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