mRNA_H-paniculata_contig1393.2407.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1393.2407.1 vs. uniprot
Match: A0A6H5JR65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR65_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 1.470e-12 Identity = 68/196 (34.69%), Postives = 93/196 (47.45%), Query Frame = 3
Query: 2106 PVIMVQLEPGEE-RQETSPEVQRNVCLKRFLHVTDFAGPQSLAATNGDSKMGQEGAT-EVKEGDKTTDPVMENADRSLQLEGEDRGASDSA---QNFGPREERECEEWRRCRLDPLWDGLGSLGERLASVDDLFNQLEQDLDHDQQVVETFQKQSYEEMAAAALDMEQAKVRRREGQQRTIFDENTHPKVPFGRSP 2678
PV+M+ LE G++ R + S N ++RFL VTDF T G ++G V + TT PV D D G D F E + R RLDPLW+GLGSLGERLA V +QL+Q++ HD++V+E +Q+++ EE AA D + D TH +P RSP
Sbjct: 174 PVVMLPLELGQDWRNDAS-----NRTVRRFLKVTDF--------TEGSHEVGDRNTVASVSQSKHTTSPVHVQGDV-------DNGLVDPILMDHRFSRDESEGRGQGRTGRLDPLWEGLGSLGERLADVGGRLDQLDQEICHDREVIEGYQREAQEEAELAARD---------------LLDIRTHRSLPPTRSP 334
BLAST of mRNA_H-paniculata_contig1393.2407.1 vs. uniprot
Match: D7FPF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF4_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 1.180e-10 Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 3
Query: 2106 PVIMVQLEPGEERQETSPEVQRNVCLKRFLHVTDFAGPQSLAATNGDSKMG-QEGATEVKEGDKTTDPVMENADRSLQLEGEDRGASDSAQNFGPREERECEE----WRRCRLDPLWDGLGSLGERLASVDDLFNQLEQDLDHDQQVVETFQKQSYEEMAAAALDMEQAKVRR 2609
PV+M+ LE G +R+ + N ++RFL V DF T ++G ++ + + + TT PV D D G D R+ R+ E R RLDPLW+ LGSLGERLA V F+QL+Q++ HD++V+E +Q+++ EE AA D+ + RR
Sbjct: 178 PVMMLPLELGHDRRNDAS----NRTVRRFLKVIDF--------TEKPHEVGDRDTVASIPQSEHTTSPVHVQGDV-------DNGVVDPIL-MDHRDSRDKSERRGQGRTGRLDPLWESLGSLGERLAVVGGRFDQLDQEICHDREVIEGYQREAQEEAELAARDLLDIRTRR 330 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1393.2407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1393.2407.1 >prot_H-paniculata_contig1393.2407.1 ID=prot_H-paniculata_contig1393.2407.1|Name=mRNA_H-paniculata_contig1393.2407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=458bp MLALGADPVIMVQLEPGEERQETSPEVQRNVCLKRFLHVTDFAGPQSLAAback to top mRNA from alignment at H-paniculata_contig1393:1337..9522+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1393.2407.1 ID=mRNA_H-paniculata_contig1393.2407.1|Name=mRNA_H-paniculata_contig1393.2407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8186bp|location=Sequence derived from alignment at H-paniculata_contig1393:1337..9522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1393:1337..9522+ >mRNA_H-paniculata_contig1393.2407.1 ID=mRNA_H-paniculata_contig1393.2407.1|Name=mRNA_H-paniculata_contig1393.2407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2748bp|location=Sequence derived from alignment at H-paniculata_contig1393:1337..9522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |