mRNA_H-paniculata_contig13911.2399.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13911.2399.1
Unique NamemRNA_H-paniculata_contig13911.2399.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13911.2399.1 vs. uniprot
Match: A0A6H5LE02_9PHAE (DUF3668 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE02_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.970e-9
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 RFREIQAASQKDLRGRITARIVSIGSGQSGGGGPVERERSDKNKALLEKEEYRAHIHKLARALKRHQAR 207
            RFR+ Q   ++   G +   +  +G+ ++     +ERERS KNKALLEKEEYRA+IHKLARAL+RHQ R
Sbjct:  797 RFRQQQ---RRTPEGGLRQEVYRLGAAKAEAEAQIERERSLKNKALLEKEEYRANIHKLARALRRHQER 862
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BLAST of mRNA_H-paniculata_contig13911.2399.1 vs. uniprot
Match: D7FXH9_ECTSI (Centrosomal protein 120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH9_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 9.450e-9
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 RFREIQAASQKDLRGRITARIVSIGSGQSGGGGPVERERSDKNKALLEKEEYRAHIHKLARALKRHQAR 207
            RFR+ Q   ++   G +   +  +G+ ++     +ERERS KNKALLEKEEYRA+IHKLARAL+ HQ R
Sbjct: 1154 RFRQQQ---RRTPEGGLRQEVYRLGAAKAEAEAQIERERSLKNKALLEKEEYRANIHKLARALRHHQER 1219
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BLAST of mRNA_H-paniculata_contig13911.2399.1 vs. uniprot
Match: A0A7S2SG35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SG35_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.230e-5
Identity = 26/66 (39.39%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    4 FREIQAASQKDLRGRITARIVSIGSGQSGGGGPVERERSDKNKALLEKEEYRAHIHKLARALKRHQ 201
            F+  + A++K     + A +  +   ++     VERER+++N+ALLEKE+Y+A++H+LARAL+R Q
Sbjct:  460 FQRFREANRKTPEAALRAELARVQGEKAEVQSRVERERTERNQALLEKEQYKAYVHQLARALRREQ 525
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BLAST of mRNA_H-paniculata_contig13911.2399.1 vs. uniprot
Match: A0A7S2GQT6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQT6_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 6.740e-5
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    4 FREIQAASQKDLRGRITARIVSIGSGQSGGGGPVERERSDKNKALLEKEEYRAHIHKLARALKRHQARR 210
            F   + A ++     +  +I  +   ++   G +E+ER+DKN+ALL+KE+YR  IH L RAL+R Q RR
Sbjct:   35 FDRFRRAHRRMPEAELQTKIARLAGEKAEVEGRIEKERADKNQALLDKEKYRLQIHHLTRALQREQERR 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13911.2399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LE02_9PHAE1.970e-952.17DUF3668 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FXH9_ECTSI9.450e-950.72Centrosomal protein 120 n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SG35_9STRA1.230e-539.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2GQT6_9STRA6.740e-539.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13911contigH-paniculata_contig13911:880..1648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog2880.D7FXH9
Preferred nameCEP120
KEGG koko:K16459
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007097,GO:0007098,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008022,GO:0008150,GO:0008283,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0021537,GO:0021543,GO:0021846,GO:0021987,GO:0022008,GO:0022027,GO:0022402,GO:0030154,GO:0030900,GO:0030953,GO:0031023,GO:0031122,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045724,GO:0045787,GO:0046605,GO:0046607,GO:0046907,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051726,GO:0060322,GO:0060491,GO:0061351,GO:0065007,GO:0070507,GO:0071840,GO:0090068,GO:0097435,GO:0120032,GO:0120034,GO:0120035,GO:1902017,GO:1902115,GO:1902117
EggNOG free text desc.interkinetic nuclear migration
EggNOG OGs2CMAG@1,2QPT0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size232
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.1609845-CDS-H-paniculata_contig13911:879..9821622929105.1609845-CDS-H-paniculata_contig13911:879..982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13911 880..982 +
1691480733.3746338-CDS-H-paniculata_contig13911:879..9821691480733.3746338-CDS-H-paniculata_contig13911:879..982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13911 880..982 +
1622929105.1825395-CDS-H-paniculata_contig13911:1520..16481622929105.1825395-CDS-H-paniculata_contig13911:1520..1648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13911 1521..1648 +
1691480733.384411-CDS-H-paniculata_contig13911:1520..16481691480733.384411-CDS-H-paniculata_contig13911:1520..1648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13911 1521..1648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13911.2399.1prot_H-paniculata_contig13911.2399.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13911 880..1648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13911.2399.1

>prot_H-paniculata_contig13911.2399.1 ID=prot_H-paniculata_contig13911.2399.1|Name=mRNA_H-paniculata_contig13911.2399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
RFREIQAASQKDLRGRITARIVSIGSGQSGGGGPVERERSDKNKALLEKE
EYRAHIHKLARALKRHQARRKIFRHV*
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mRNA from alignment at H-paniculata_contig13911:880..1648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13911.2399.1 ID=mRNA_H-paniculata_contig13911.2399.1|Name=mRNA_H-paniculata_contig13911.2399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=769bp|location=Sequence derived from alignment at H-paniculata_contig13911:880..1648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTTCGAGAGATTCAGGCAGCAAGTCAGAAAGACCTCCGAGGGAGGAT
TACGGCAAGAATTGTTTCGATTGGGAGCGGCCAAAGCGGAGGCGGAGGCC
CAGGTGACGGTTCGCGTGTAGTTGACTCTCTTATCGTGGCCACTAGCTGT
GGTTGAGCGTGCGAGTATGGGAACTTGATGGATTCCATTAAATGGTTGCT
ACGGTCGCTTGTTCAATCGTTACGTACAAAACTGTATCCCGATGCCGAAT
GATTTCCGCATTTGCATTATGACGATTTCGCGGTGGACGACGTTCCTGAT
AAGATCGACCGTGTCATGTAAGAAAGTGAGACTCAAGCTGATGCAGCCTG
AAATGTGACGTTCCTCGGGGTGGAGCTAGAACCCACAGGTAGTGTCGAAT
TGGTATATACTTGGTATGTACTTGGTATGTACTTGGTATGTACCCATTCG
CAAAGCTTGACCACCTCGCAAGTTTTTGAACCGTAGTTCTGTGCCGATAT
GATTTACTGCACTTTCTGTTGTACACCATTTTGTCATGTGAAGCACGTAT
TCCGGTGGTTCAACAGCTGCCCTCGTTCTGAAGCACATATCTAATAAACA
GCTTACGCACAGAAACCCATAATTTTGTATATTTTGGTAAGTTGAGCGCG
AGAGGAGCGATAAAAACAAAGCGCTCTTGGAGAAGGAGGAGTACCGAGCG
CACATCCACAAGTTGGCAAGGGCGCTCAAGAGGCACCAGGCAAGAAGAAA
AATTTTTCGCCACGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13911:880..1648+

>mRNA_H-paniculata_contig13911.2399.1 ID=mRNA_H-paniculata_contig13911.2399.1|Name=mRNA_H-paniculata_contig13911.2399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig13911:880..1648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTTCGAGAGATTCAGGCAGCAAGTCAGAAAGACCTCCGAGGGAGGAT
TACGGCAAGAATTGTTTCGATTGGGAGCGGCCAAAGCGGAGGCGGAGGCC
CAGAGATTTCGAGAGATTCAGGCAGCAAGTCAGAAAGACCTCCGAGGGAG
GATTACGGCAAGAATTGTTTCGATTGGGAGCGGCCAAAGCGGAGGCGGAG
GCCCAGTTGAGCGCGAGAGGAGCGATAAAAACAAAGCGCTCTTGGAGAAG
GAGGAGTACCGAGCGCACATCCACAAGTTGGCAAGGGCGCTCAAGAGGCA
CCAGGCAAGAAGAAAAATTTTTCGCCACGTGTGATTGAGCGCGAGAGGAG
CGATAAAAACAAAGCGCTCTTGGAGAAGGAGGAGTACCGAGCGCACATCC
ACAAGTTGGCAAGGGCGCTCAAGAGGCACCAGGCAAGAAGAAAAATTTTT
CGCCACGTGTGA
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