mRNA_H-paniculata_contig1391.2398.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1391.2398.1
Unique NamemRNA_H-paniculata_contig1391.2398.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1391.2398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1391contigH-paniculata_contig1391:26223..26923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size701
Cds size372
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.045613-UTR-H-paniculata_contig1391:26222..265511622929105.045613-UTR-H-paniculata_contig1391:26222..26551Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1391 26223..26551 +
1691480733.333301-UTR-H-paniculata_contig1391:26222..265511691480733.333301-UTR-H-paniculata_contig1391:26222..26551Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1391 26223..26551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.0618722-CDS-H-paniculata_contig1391:26551..269231622929105.0618722-CDS-H-paniculata_contig1391:26551..26923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1391 26552..26923 +
1691480733.3488812-CDS-H-paniculata_contig1391:26551..269231691480733.3488812-CDS-H-paniculata_contig1391:26551..26923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1391 26552..26923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1391.2398.1prot_H-paniculata_contig1391.2398.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1391 26552..26923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1391.2398.1

>prot_H-paniculata_contig1391.2398.1 ID=prot_H-paniculata_contig1391.2398.1|Name=mRNA_H-paniculata_contig1391.2398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MASAQRPSTGFESSSAGRNSSSARGKTCELSEENRNALALRYALALPLGK
TRLPAGVGSKLAKEIWVNEKYPGKLWGRVAKQLEEGNVVSLKTQGRVGRP
SDFTPRKQAKIQHRTRARARRRR*
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mRNA from alignment at H-paniculata_contig1391:26223..26923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1391.2398.1 ID=mRNA_H-paniculata_contig1391.2398.1|Name=mRNA_H-paniculata_contig1391.2398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=701bp|location=Sequence derived from alignment at H-paniculata_contig1391:26223..26923+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGCCTGGGCATTTATGTAATTTCTGCATATGTCCTCGGGATGATGTTC
GATTTCAAAATGGATTGTTGCGTTGGGTTCCTTGGCGTTTTTCCTATGAA
CCAGAGATTCTGTTCTGTTATTTTGTTCCGAATTTGTGTTCCGAAAAGAA
GAAGAATTCCTGTTGACCTTTTCGTTACTTGGACGCGTTTTCCGGCTCAT
TTTGAATGGTTTCGCAGCGCGTTGTTGTCGCCCACTACTCTCATAACCTC
TTCACTTGCCCCCAGAGCCCCATACACTCCTACAAATTACCACAACCACG
AGAACGGACTACAAATCCAGTGAGACGCGATGGCGAGCGCGCAGAGGCCG
TCCACCGGGTTCGAATCTTCATCAGCTGGTCGGAACTCTTCATCTGCGAG
GGGCAAAACTTGCGAGCTGAGTGAGGAGAACCGAAACGCGCTTGCTCTGC
GATACGCGCTTGCTCTTCCTCTGGGAAAAACAAGGCTTCCGGCAGGCGTC
GGGTCTAAGTTGGCTAAAGAAATCTGGGTTAACGAGAAATATCCGGGGAA
GTTGTGGGGGCGCGTGGCGAAGCAACTCGAGGAAGGGAACGTGGTCTCTC
TGAAAACGCAGGGAAGAGTTGGCCGGCCGTCCGATTTCACGCCGCGGAAG
CAGGCCAAGATCCAACACCGCACACGGGCAAGGGCACGCCGAAGACGCTG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig1391:26223..26923+

>mRNA_H-paniculata_contig1391.2398.1 ID=mRNA_H-paniculata_contig1391.2398.1|Name=mRNA_H-paniculata_contig1391.2398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig1391:26223..26923+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAGCGCGCAGAGGCCGTCCACCGGGTTCGAATCTTCATCAGCTGG
TCGGAACTCTTCATCTGCGAGGGGCAAAACTTGCGAGCTGAGTGAGGAGA
ACCGAAACGCGCTTGCTCTGCGATACGCGCTTGCTCTTCCTCTGGGAAAA
ACAAGGCTTCCGGCAGGCGTCGGGTCTAAGTTGGCTAAAGAAATCTGGGT
TAACGAGAAATATCCGGGGAAGTTGTGGGGGCGCGTGGCGAAGCAACTCG
AGGAAGGGAACGTGGTCTCTCTGAAAACGCAGGGAAGAGTTGGCCGGCCG
TCCGATTTCACGCCGCGGAAGCAGGCCAAGATCCAACACCGCACACGGGC
AAGGGCACGCCGAAGACGCTGAATGGCGAGCGCGCAGAGGCCGTCCACCG
GGTTCGAATCTTCATCAGCTGGTCGGAACTCTTCATCTGCGAGGGGCAAA
ACTTGCGAGCTGAGTGAGGAGAACCGAAACGCGCTTGCTCTGCGATACGC
GCTTGCTCTTCCTCTGGGAAAAACAAGGCTTCCGGCAGGCGTCGGGTCTA
AGTTGGCTAAAGAAATCTGGGTTAACGAGAAATATCCGGGGAAGTTGTGG
GGGCGCGTGGCGAAGCAACTCGAGGAAGGGAACGTGGTCTCTCTGAAAAC
GCAGGGAAGAGTTGGCCGGCCGTCCGATTTCACGCCGCGGAAGCAGGCCA
AGATCCAACACCGCACACGGGCAAGGGCACGCCGAAGACGCTGA
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