mRNA_H-paniculata_contig13903.2393.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13903.2393.1
Unique NamemRNA_H-paniculata_contig13903.2393.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Match: D7G524_ECTSI (Catalase decomposes hydrogen peroxide to molecular oxygen and water n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G524_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.290e-31
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDLIALAGTVAIKSMGG 192
            QSDGRGGCDGGRIRFNPERSW DNT+LDKALTLLQP+KLKYGDAVSWGDLI L G  AI+SMGG
Sbjct:  107 QSDGRGGCDGGRIRFNPERSWADNTNLDKALTLLQPIKLKYGDAVSWGDLITLTGNEAIRSMGG 170
[Close]
BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Match: A0A6H5J7C7_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C7_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 8.350e-31
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDLIALAGTVAIKSMGG 192
            QSDGRGGCDGGRIRFNPERSW DN +LDKALTLLQP+KLKYGDAVSWGDLI L G  AI+SMGG
Sbjct:  107 QSDGRGGCDGGRIRFNPERSWADNINLDKALTLLQPVKLKYGDAVSWGDLITLTGNEAIRSMGG 170
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BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Match: A0A6A4BEF6_9STRA (PEROXIDASE_4 domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4BEF6_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.960e-30
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDLIALAGTVAIKSMGG 192
            ++DGRGGCDGGRIRFNPERSW DNT+LDKAL LL+P+KLKYGDA+SWGDLI L+G VAI+SMGG
Sbjct:  130 RADGRGGCDGGRIRFNPERSWADNTNLDKALDLLEPIKLKYGDALSWGDLIVLSGNVAIESMGG 193
[Close]
BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Match: D7G6M6_ECTSI (Catalase decomposes hydrogen peroxide to molecular oxygen and water n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M6_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.550e-30
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDLIALAGTVAIKSMGG 192
            QSDGRGGCDGGRIRFNPERSW DNT+LDKALTLLQP+KLKYGDAVSWGDLI L G  AI+SMGG
Sbjct:  107 QSDGRGGCDGGRIRFNPERSWADNTNLDKALTLLQPIKLKYGDAVSWGDLITLTGNEAIRSMGG 170
[Close]
BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Match: A0A6H5JB31_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB31_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.610e-30
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDLIALAGTVAIKSMGG 192
            QSDGRGGCDGGRIRFNPERSW DNT+LDK+LTLLQP+KLK GDAVSWGDLI L G  AI+SMGG
Sbjct:  129 QSDGRGGCDGGRIRFNPERSWADNTNLDKSLTLLQPIKLKDGDAVSWGDLITLTGNEAIRSMGG 192
[Close]
BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Match: A0A6H5JXZ4_9PHAE (KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.570e-30
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDLIALAGTVAIKSMGG 192
            QSDGRGGCDGGRIRFNPERSW DNT+LDKALTLLQP+KLKYGDAVSWGDLI L G  AI+SMGG
Sbjct:  107 QSDGRGGCDGGRIRFNPERSWADNTNLDKALTLLQPIKLKYGDAVSWGDLITLTGNEAIRSMGG 170
[Close]
BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Match: D7G523_ECTSI (PEROXIDASE_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G523_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.750e-30
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDLIALAGTVAIKSMGG 192
            QSDGRGGCDGGRIRFNPERSW DNT+LDKALTLLQP+KLKYGDAVSWGDLI L G  AI+SMGG
Sbjct:  107 QSDGRGGCDGGRIRFNPERSWADNTNLDKALTLLQPIKLKYGDAVSWGDLITLTGNEAIRSMGG 170
[Close]
BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Match: D7FTZ8_ECTSI (Catalase decomposes hydrogen peroxide to molecular oxygen and water n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ8_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 7.410e-30
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDLIALAGTVAIKSMGG 192
            QSDGRGGCDGGRIRFNPERSW DNT+LDK+LTLLQP+KLKYGDAVSWGDLI L G  AI+SMGG
Sbjct:  106 QSDGRGGCDGGRIRFNPERSWADNTNLDKSLTLLQPIKLKYGDAVSWGDLITLTGNEAIRSMGG 169
[Close]
BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Match: A0A0P1B0Z9_PLAHL (Catalase peroxidase hpi n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0Z9_PLAHL)

HSP 1 Score: 110 bits (275), Expect = 1.360e-28
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDLIALAGTVAIKSMGG 192
            ++DGRGGCDGGRIRFNPERSW DNT+LDKAL LL+P+K KYGD +SWGDLI L+G VAI+SMGG
Sbjct:   46 RADGRGGCDGGRIRFNPERSWDDNTNLDKALRLLKPIKAKYGDTLSWGDLIVLSGNVAIQSMGG 109
[Close]
BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Match: H3GCG8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GCG8_PHYRM)

HSP 1 Score: 114 bits (285), Expect = 1.370e-28
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDLIALAGTVAIKSMGG 192
            ++DGRGGCDGGRIRFNPERSW DNT+LDKAL LL+P+KLKYGDA+SWGDLI L+G VAI+SMGG
Sbjct:   98 RADGRGGCDGGRIRFNPERSWADNTNLDKALDLLEPIKLKYGDALSWGDLIVLSGDVAIESMGG 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13903.2393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G524_ECTSI1.290e-3187.50Catalase decomposes hydrogen peroxide to molecular... [more]
A0A6H5J7C7_9PHAE8.350e-3185.94KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6A4BEF6_9STRA1.960e-3081.25PEROXIDASE_4 domain-containing protein n=3 Tax=Phy... [more]
D7G6M6_ECTSI2.550e-3087.50Catalase decomposes hydrogen peroxide to molecular... [more]
A0A6H5JB31_9PHAE4.610e-3084.38KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JXZ4_9PHAE5.570e-3087.50KatG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G523_ECTSI5.750e-3087.50PEROXIDASE_4 domain-containing protein n=1 Tax=Ect... [more]
D7FTZ8_ECTSI7.410e-3085.94Catalase decomposes hydrogen peroxide to molecular... [more]
A0A0P1B0Z9_PLAHL1.360e-2878.13Catalase peroxidase hpi n=1 Tax=Plasmopara halsted... [more]
H3GCG8_PHYRM1.370e-2881.25Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13903contigH-paniculata_contig13903:4685..5589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue3.6e-25
Seed eggNOG ortholog2880.D7G523
Preferred namekatG
KEGG rclassRC00034,RC00213,RC00767,RC02141
KEGG koko:K03782
KEGG ReactionR00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906
KEGG Pathwayko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009267,GO:0009408,GO:0009605,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019953,GO:0020037,GO:0022414,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034599,GO:0034605,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042594,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051704,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0071496,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748
EggNOG free text desc.catalase activity
EggNOG OGs2QTDY@2759,COG0685@1
Ec32 ortholog descriptionCatalase decomposes hydrogen peroxide to molecular oxygen and water
Ec32 orthologEc-00_008220.1
EC1.11.1.21
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size194
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.6656537-CDS-H-paniculata_contig13903:4684..47711622929104.6656537-CDS-H-paniculata_contig13903:4684..4771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13903 4685..4771 +
1691480733.1379864-CDS-H-paniculata_contig13903:4684..47711691480733.1379864-CDS-H-paniculata_contig13903:4684..4771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13903 4685..4771 +
1622929104.6770473-CDS-H-paniculata_contig13903:5483..55881622929104.6770473-CDS-H-paniculata_contig13903:5483..5588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13903 5484..5588 +
1691480733.1506996-CDS-H-paniculata_contig13903:5483..55881691480733.1506996-CDS-H-paniculata_contig13903:5483..5588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13903 5484..5588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13903.2393.1prot_H-paniculata_contig13903.2393.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13903 4685..5588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13903.2393.1

>prot_H-paniculata_contig13903.2393.1 ID=prot_H-paniculata_contig13903.2393.1|Name=mRNA_H-paniculata_contig13903.2393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
QSDGRGGCDGGRIRFNPERSWRDNTSLDKALTLLQPLKLKYGDAVSWGDL
IALAGTVAIKSMGG
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mRNA from alignment at H-paniculata_contig13903:4685..5589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13903.2393.1 ID=mRNA_H-paniculata_contig13903.2393.1|Name=mRNA_H-paniculata_contig13903.2393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=905bp|location=Sequence derived from alignment at H-paniculata_contig13903:4685..5589+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCTGATGGCCGTGGCGGCTGTGATGGTGGCCGTATCCGCTTTAACCC
TGAGCGTAGCTGGAGAGATAACACCAGTTTGGACAAGGTACAGGAGATGA
GACGTACACGAATATCGTCGATAAACGACCAGAGTCTCATAGTATAGGAA
GGGTAGATTAATACCAAGAAGTAGGAGAGTCGGCTACGGTAGGGGGGGGG
CGGGGGGTTTGAGCCACTTCTTTAACGAACGACCGTCTCGAGAAGCGGCG
TTAAAACATCTGCAATCAAAACCACTTCAGGCTTTACAACGGTGCGCGTT
CAGACACCCTAGACGTACACCATGCGTTATTCGGAACGGCCGTACTGATC
AAGGGGTAGAACGTAATGTGCCGAGGGGCTTTCAAAAGTGGCCCAAAACG
TTAAAAAAGCGGCTCAGCAACCCCCCCCCCCCCCCGATTACCATAGCCCG
ACTCGGAATTACTTCTACTATTTCCCCGCGATTGAGCGTTTCGTGTTCAC
TATATCAGAGCTGCGAAGAGAAGGCGGGTGTGTTCATCTTGGGTACTTTG
AAGTAAGATTTGCCAAGTCTCGTCGTTGTTCTCGTTGAAAAAATGTAATT
GTGTACACTGCAGAAATCAAGGTGGCTGGCGGGTGCCAGTGTTGACCGAG
CGATTTATTATTGTGGGCGATCCCACCTTTCCCGCTGAACTAGGGGAGTT
AGAGGTATTCCGTTCCTCTTGTCAAGCAATCAGTTGCCGGAATGTGTCAC
ACAAGACCTCATTTGTTTTCCGGTTGCTGTTTCGTGGCTGATCCTTCAGG
CCCTTACCCTTCTCCAGCCCCTCAAGCTCAAGTATGGCGACGCTGTCTCA
TGGGGTGATCTCATTGCACTCGCTGGCACTGTGGCTATCAAATCTATGGG
TGGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig13903:4685..5589+

>mRNA_H-paniculata_contig13903.2393.1 ID=mRNA_H-paniculata_contig13903.2393.1|Name=mRNA_H-paniculata_contig13903.2393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig13903:4685..5589+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCTGATGGCCGTGGCGGCTGTGATGGTGGCCGTATCCGCTTTAACCC
TGAGCGTAGCTGGAGAGATAACACCAGTTTGGACAAGCAGTCTGATGGCC
GTGGCGGCTGTGATGGTGGCCGTATCCGCTTTAACCCTGAGCGTAGCTGG
AGAGATAACACCAGTTTGGACAAGGCCCTTACCCTTCTCCAGCCCCTCAA
GCTCAAGTATGGCGACGCTGTCTCATGGGGTGATCTCATTGCACTCGCTG
GCACTGTGGCTATCAAATCTATGGGTGGCGCCCTTACCCTTCTCCAGCCC
CTCAAGCTCAAGTATGGCGACGCTGTCTCATGGGGTGATCTCATTGCACT
CGCTGGCACTGTGGCTATCAAATCTATGGGTGGC
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