mRNA_H-paniculata_contig13902.2392.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13902.2392.1
Unique NamemRNA_H-paniculata_contig13902.2392.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13902.2392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13902contigH-paniculata_contig13902:6089..6578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size326
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13902.2392.1prot_H-paniculata_contig13902.2392.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13902 6131..6546 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.5978825-UTR-H-paniculata_contig13902:6088..61301622929104.5978825-UTR-H-paniculata_contig13902:6088..6130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13902 6089..6130 -
1691480733.0903587-UTR-H-paniculata_contig13902:6088..61301691480733.0903587-UTR-H-paniculata_contig13902:6088..6130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13902 6089..6130 -
1622929104.6332057-UTR-H-paniculata_contig13902:6546..65781622929104.6332057-UTR-H-paniculata_contig13902:6546..6578Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13902 6547..6578 -
1691480733.1204116-UTR-H-paniculata_contig13902:6546..65781691480733.1204116-UTR-H-paniculata_contig13902:6546..6578Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13902 6547..6578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.6094303-CDS-H-paniculata_contig13902:6130..63691622929104.6094303-CDS-H-paniculata_contig13902:6130..6369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13902 6131..6369 -
1691480733.1005888-CDS-H-paniculata_contig13902:6130..63691691480733.1005888-CDS-H-paniculata_contig13902:6130..6369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13902 6131..6369 -
1622929104.6213646-CDS-H-paniculata_contig13902:6533..65461622929104.6213646-CDS-H-paniculata_contig13902:6533..6546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13902 6534..6546 -
1691480733.1100805-CDS-H-paniculata_contig13902:6533..65461691480733.1100805-CDS-H-paniculata_contig13902:6533..6546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13902 6534..6546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13902.2392.1

>prot_H-paniculata_contig13902.2392.1 ID=prot_H-paniculata_contig13902.2392.1|Name=mRNA_H-paniculata_contig13902.2392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MRVPGAFYTLKRSSGSSAAVMATFVYSSQWKTVAPNLDCFKICDELCLLT
DTTGHNSFRRSIPYTMVDVYFFLDSINGDEKVL*
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mRNA from alignment at H-paniculata_contig13902:6089..6578-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13902.2392.1 ID=mRNA_H-paniculata_contig13902.2392.1|Name=mRNA_H-paniculata_contig13902.2392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=490bp|location=Sequence derived from alignment at H-paniculata_contig13902:6089..6578- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTGGCGCTTCCATATCGACGTTACCGACAATGCGCGTACCTGGTGAG
CAAGAAACCATCCACAACTCTGATTGTTTTTTATTTTTGCTGTACAAAGT
GCATCCAGGAATCGCAAAAGAAAAAAGGCGTCGAGGAGTAGCCACCTACG
ACGAGCGAGTCAGTTGGTAACCGTGCCAGCTTCACCGTTTCGTCCCACGT
CTCGGCCAGGTGCATTTTACACCCTGAAGCGCTCAAGTGGGTCATCAGCC
GCGGTCATGGCAACTTTTGTGTATTCATCACAATGGAAAACCGTCGCCCC
CAACCTCGACTGCTTCAAGATTTGTGATGAACTATGCCTCCTAACAGACA
CTACCGGCCACAATTCATTCAGGAGGTCCATTCCATATACCATGGTTGAC
GTCTATTTTTTCCTTGATTCAATAAATGGCGACGAAAAAGTCCTGTAGTA
AGAACGGTTCCAAACAGAGTCGGTCGTGCTGCGCCCGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13902:6089..6578-

>mRNA_H-paniculata_contig13902.2392.1 ID=mRNA_H-paniculata_contig13902.2392.1|Name=mRNA_H-paniculata_contig13902.2392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig13902:6089..6578- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGTACCTGATGCGCGTACCTGGTGCATTTTACACCCTGAAGCGCT
CAAGTGGGTCATCAGCCGCGGTCATGGCAACTTTTGTGTATTCATCACAA
TGGAAAACCGTCGCCCCCAACCTCGACTGCTTCAAGATTTGTGATGAACT
ATGCCTCCTAACAGACACTACCGGCCACAATTCATTCAGGAGGTCCATTC
CATATACCATGGTTGACGTCTATTTTTTCCTTGATTCAATAAATGGCGAC
GAAAAAGTCCTGTAGGTGCATTTTACACCCTGAAGCGCTCAAGTGGGTCA
TCAGCCGCGGTCATGGCAACTTTTGTGTATTCATCACAATGGAAAACCGT
CGCCCCCAACCTCGACTGCTTCAAGATTTGTGATGAACTATGCCTCCTAA
CAGACACTACCGGCCACAATTCATTCAGGAGGTCCATTCCATATACCATG
GTTGACGTCTATTTTTTCCTTGATTCAATAAATGGCGACGAAAAAGTCCT
GTAG
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