mRNA_H-paniculata_contig1389.2385.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig1389.2385.1
Unique Name	mRNA_H-paniculata_contig1389.2385.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.140e-67
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 1

Query:    1 ISSTQPHLNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            +SS +P  NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   14 VSSNKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Match: UPI000528D6F7 (histone H4-like isoform X2 n=2 Tax=Euteleostomi TaxID=117571 RepID=UPI000528D6F7)

HSP 1 Score: 201 bits (512), Expect = 2.740e-65
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 1

Query:   10 TQPHLNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
             Q H +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 NQQHSSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110

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BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Match: W7TR01_9STRA (Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR01_9STRA)

HSP 1 Score: 201 bits (511), Expect = 6.310e-65
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1

Query:    4 SSTQPHLN-MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            SST P+   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   14 SSTHPNSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Match: A0A368PPX9_SETIT (Histone H4 (Fragment) n=1 Tax=Setaria italica TaxID=4555 RepID=A0A368PPX9_SETIT)

HSP 1 Score: 202 bits (513), Expect = 6.620e-65
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 1

Query:    4 SSTQPHLNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            SS+ P   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   38 SSSSPASAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 148

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BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Match: A0A1D6IAU4_MAIZE (Histone H4 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6IAU4_MAIZE)

HSP 1 Score: 201 bits (511), Expect = 9.320e-65
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 1

Query:   13 QPHLNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            QP   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   30 QPAAEMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 137

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BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Match: A0A0B6YRU8_9EUPU (Histone H4 (Fragment) n=5 Tax=Bilateria TaxID=33213 RepID=A0A0B6YRU8_9EUPU)

HSP 1 Score: 200 bits (508), Expect = 9.820e-65
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 1

Query:   22 LNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            +NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 INMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106

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BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Match: A0A6P6PUQ0_CARAU (Histone H4 n=2 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6PUQ0_CARAU)

HSP 1 Score: 200 bits (509), Expect = 1.020e-64
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1

Query:   19 HLNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            HL MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   13 HLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 118

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BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Match: W5QFN7_SHEEP (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEEP)

HSP 1 Score: 199 bits (507), Expect = 1.580e-64
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 1

Query:    7 STQPHLNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            S Q   NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 SAQHLGNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110

[Close]

BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Match: A0A5B6ZYC1_DAVIN (Histone H4 (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZYC1_DAVIN)

HSP 1 Score: 200 bits (508), Expect = 1.590e-64
Identity = 103/110 (93.64%), Postives = 105/110 (95.45%), Query Frame = 1

Query:    7 STQPHLNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            S    L MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   12 SLNTFLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 121

[Close]

BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Match: A0A2P5A853_PARAD (Histone H4 (Fragment) n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5A853_PARAD)

HSP 1 Score: 201 bits (511), Expect = 1.620e-64
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 1

Query:    1 ISSTQPHLNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 336
            IS  +P   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   43 ISIFRPSSAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 154

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1389.2385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A3L6V663_9STRA	1.140e-67	95.54	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
UPI000528D6F7	2.740e-65	94.50	histone H4-like isoform X2 n=2 Tax=Euteleostomi Ta...	[more]
W7TR01_9STRA	6.310e-65	94.64	Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 Re...	[more]
A0A368PPX9_SETIT	6.620e-65	93.69	Histone H4 (Fragment) n=1 Tax=Setaria italica TaxI...	[more]
A0A1D6IAU4_MAIZE	9.320e-65	95.37	Histone H4 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D...	[more]
A0A0B6YRU8_9EUPU	9.820e-65	97.14	Histone H4 (Fragment) n=5 Tax=Bilateria TaxID=3321...	[more]
A0A6P6PUQ0_CARAU	1.020e-64	97.17	Histone H4 n=2 Tax=Carassius auratus TaxID=7957 Re...	[more]
W5QFN7_SHEEP	1.580e-64	94.55	Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5Q...	[more]
A0A5B6ZYC1_DAVIN	1.590e-64	93.64	Histone H4 (Fragment) n=1 Tax=Davidia involucrata ...	[more]
A0A2P5A853_PARAD	1.620e-64	92.86	Histone H4 (Fragment) n=1 Tax=Parasponia andersoni...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1389	contig	H-paniculata_contig1389:19024..19362 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	198.7
Seed ortholog evalue	1.3e-48
Seed eggNOG ortholog	157072.XP_008863623.1
KEGG ko	ko:K11254
KEGG Pathway	ko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting category	other localisation
GOs	GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG3467@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036
Exons	1
Model size	339
Cds size	312
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929103.6070435-UTR-H-paniculata_contig1389:19023..19050	1622929103.6070435-UTR-H-paniculata_contig1389:19023..19050	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1389 19024..19050 +
1691480732.7723587-UTR-H-paniculata_contig1389:19023..19050	1691480732.7723587-UTR-H-paniculata_contig1389:19023..19050	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1389 19024..19050 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929103.6222875-CDS-H-paniculata_contig1389:19050..19362	1622929103.6222875-CDS-H-paniculata_contig1389:19050..19362	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1389 19051..19362 +
1691480732.784116-CDS-H-paniculata_contig1389:19050..19362	1691480732.784116-CDS-H-paniculata_contig1389:19050..19362	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1389 19051..19362 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1389.2385.1	prot_H-paniculata_contig1389.2385.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig1389 19051..19362 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig1389:19024..19362+
coding sequence from alignment at H-paniculata_contig1389:19024..19362+

protein sequence of mRNA_H-paniculata_contig1389.2385.1

>prot_H-paniculata_contig1389.2385.1 ID=prot_H-paniculata_contig1389.2385.1|Name=mRNA_H-paniculata_contig1389.2385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*

mRNA from alignment at H-paniculata_contig1389:19024..19362+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig1389.2385.1 ID=mRNA_H-paniculata_contig1389.2385.1|Name=mRNA_H-paniculata_contig1389.2385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig1389:19024..19362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCTTCAACACAACCACACTTAAACATGTCTGGACGCGGAAAGGGCGG
TAAGGGTCTGGGCAAGGGCGGTGCCAAGCGCCACCGCAAGGTACTTCGCG
ACAACATCCAGGGCATTACCAAGCCCGCGATTCGGCGTCTGGCTCGTCGT
GGCGGTGTAAAGCGCATTTCTGGGCTGATCTACGAGGAGACCCGTGGTGT
TCTCAAGGTATTCCTGGAGAACGTCATCCGCGATTCGGTCACCTACACCG
AGCACGCCCGCCGGAAGACTGTGACTGCCATGGACGTGGTCTATGCCCTC
AAGCGCCAAGGTCGCACGCTATATGGCTTTGGCGGCTAG

Coding sequence (CDS) from alignment at H-paniculata_contig1389:19024..19362+

>mRNA_H-paniculata_contig1389.2385.1 ID=mRNA_H-paniculata_contig1389.2385.1|Name=mRNA_H-paniculata_contig1389.2385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig1389:19024..19362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGTGCCAA
GCGCCACCGCAAGGTACTTCGCGACAACATCCAGGGCATTACCAAGCCCG
CGATTCGGCGTCTGGCTCGTCGTGGCGGTGTAAAGCGCATTTCTGGGCTG
ATCTACGAGGAGACCCGTGGTGTTCTCAAGGTATTCCTGGAGAACGTCAT
CCGCGATTCGGTCACCTACACCGAGCACGCCCGCCGGAAGACTGTGACTG
CCATGGACGTGGTCTATGCCCTCAAGCGCCAAGGTCGCACGCTATATGGC
TTTGGCGGCTAGATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAA
GGGCGGTGCCAAGCGCCACCGCAAGGTACTTCGCGACAACATCCAGGGCA
TTACCAAGCCCGCGATTCGGCGTCTGGCTCGTCGTGGCGGTGTAAAGCGC
ATTTCTGGGCTGATCTACGAGGAGACCCGTGGTGTTCTCAAGGTATTCCT
GGAGAACGTCATCCGCGATTCGGTCACCTACACCGAGCACGCCCGCCGGA
AGACTGTGACTGCCATGGACGTGGTCTATGCCCTCAAGCGCCAAGGTCGC
ACGCTATATGGCTTTGGCGGCTAG