mRNA_H-paniculata_contig13867.2371.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13867.2371.1
Unique NamemRNA_H-paniculata_contig13867.2371.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13867.2371.1 vs. uniprot
Match: D7FHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD0_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 7.390e-51
Identity = 100/202 (49.50%), Postives = 132/202 (65.35%), Query Frame = 1 
Query:    1 VHVDRAPT-VALETRPRAGNLRGSRDKHPRQPVATRRGLPHQYFVRAMEVTLNAISRVEPAANVDVVVFSEGRWGEMVDEQGVSTDWNIGSEICEELGLQCSQELVLLNDHRGTSDQQLRSVVPEALECIGGADVFISSEDEFSRAAAALSHNVKVLTERWEENADEDEQMVRLDVATTVAGVEDDVRDQLKRVVGEWRECS 603
            VHVDRAP+ V L  R     LRG+   H        R LPHQY+VRAME +L++I+  EP A+VDV +FSEG+WG MVDE G+   W++  E C++LGL CSQ +VLLN+       Q       +LECI  +D+FI+SE +FSRA A LS +VKVLT+RWE   DE+E MV L+ ATT+AG+ D  R  L+ +V ++ ECS
Sbjct:   90 VHVDRAPSSVDLSKR-----LRGAAPLH--------RSLPHQYYVRAMEASLHSIAVAEPGAHVDVAIFSEGQWGGMVDEMGLPLYWDVAGETCDDLGLHCSQHVVLLNERTAPESSQ-------SLECIAASDLFIASESKFSRAGAVLSDHVKVLTDRWE--MDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECS 269
[Close]
BLAST of mRNA_H-paniculata_contig13867.2371.1 vs. uniprot
Match: A0A6H5L6Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y9_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.280e-48
Identity = 98/202 (48.51%), Postives = 132/202 (65.35%), Query Frame = 1 
Query:    1 VHVDRAPT-VALETRPRAGNLRGSRDKHPRQPVATRRGLPHQYFVRAMEVTLNAISRVEPAANVDVVVFSEGRWGEMVDEQGVSTDWNIGSEICEELGLQCSQELVLLNDHRGTSDQQLRSVVPEALECIGGADVFISSEDEFSRAAAALSHNVKVLTERWEENADEDEQMVRLDVATTVAGVEDDVRDQLKRVVGEWRECS 603
            VHVDRAP+ V L  R     LRG+        V   R LPHQY+VRAME +L++I+  EP A+VDV +FSEG+WG MVDE G+   W++  E C++LGL C+Q +VLLN+       Q       +L+CI  +D+FI+SE +FSRA A LS +VKVLT+RWE   DE+E MV L+ ATT+AG+ D  R  L+ +V ++ ECS
Sbjct:  195 VHVDRAPSSVDLSKR-----LRGA--------VPLHRSLPHQYYVRAMEASLHSIAVAEPGAHVDVAIFSEGQWGGMVDEMGLPLYWDVAGETCDDLGLHCTQHVVLLNERTAPESSQ-------SLDCIAASDLFIASESKFSRAGAVLSDHVKVLTDRWE--MDEEEMMVALNPATTIAGMPDSQRQLLRTLVADYHECS 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13867.2371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHD0_ECTSI7.390e-5149.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Y9_9PHAE1.280e-4848.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13867contigH-paniculata_contig13867:2606..5261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1053
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13867.2371.1prot_H-paniculata_contig13867.2371.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13867 3023..5123 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.169423-UTR-H-paniculata_contig13867:2605..30221622929102.169423-UTR-H-paniculata_contig13867:2605..3022Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13867 2606..3022 -
1691480732.1550267-UTR-H-paniculata_contig13867:2605..30221691480732.1550267-UTR-H-paniculata_contig13867:2605..3022Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13867 2606..3022 -
1622929102.2209704-UTR-H-paniculata_contig13867:5123..52611622929102.2209704-UTR-H-paniculata_contig13867:5123..5261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13867 5124..5261 -
1691480732.1885147-UTR-H-paniculata_contig13867:5123..52611691480732.1885147-UTR-H-paniculata_contig13867:5123..5261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13867 5124..5261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.1918068-CDS-H-paniculata_contig13867:3022..33521622929102.1918068-CDS-H-paniculata_contig13867:3022..3352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13867 3023..3352 -
1691480732.1726892-CDS-H-paniculata_contig13867:3022..33521691480732.1726892-CDS-H-paniculata_contig13867:3022..3352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13867 3023..3352 -
1622929102.2103634-CDS-H-paniculata_contig13867:4955..51231622929102.2103634-CDS-H-paniculata_contig13867:4955..5123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13867 4956..5123 -
1691480732.1807532-CDS-H-paniculata_contig13867:4955..51231691480732.1807532-CDS-H-paniculata_contig13867:4955..5123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13867 4956..5123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13867.2371.1

>prot_H-paniculata_contig13867.2371.1 ID=prot_H-paniculata_contig13867.2371.1|Name=mRNA_H-paniculata_contig13867.2371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MEVTLNAISRVEPAANVDVVVFSEGRWGEMVDEQGVSTDWNIGSEICEEL
GLQCSQELVLLNDHRGTSDQQLRSVVPEALECIGGADVFISSEDEFSRAA
AALSHNVKVLTERWEENADEDEQMVRLDVATTVAGVEDDVRDQLKRVVGE
WRECSLEAQFPRAKA*
back to top

mRNA from alignment at H-paniculata_contig13867:2606..5261-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13867.2371.1 ID=mRNA_H-paniculata_contig13867.2371.1|Name=mRNA_H-paniculata_contig13867.2371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2656bp|location=Sequence derived from alignment at H-paniculata_contig13867:2606..5261- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACATGTGGACCGGGCGCCCACGGTAGCCCTCGAGACTAGACCTCGAGC
AGGCAACTTGCGCGGCAGCCGGGACAAGCATCCTCGGCAGCCGGTGGCGA
CGCGCAGGGGGCTTCCGCATCAGTACTTCGTGAGGGCGATGGAGGTGACC
CTGAACGCCATATCTCGCGTGGAACCAGCAGCGAATGTGGACGTTGTGGT
GTTCAGCGAGGGTCGGTGGGGGGAGATGGTGGATGAACAGGGTGTGTCGA
CCGACTGGAACATCGGGAGCGAGATCTGCGAGGAGCTCGGGCTGCAGTGC
TCTCAGGTACGAAGCGTTATCCATAGGCTCTGTGTGTACAGTTGGGTTAG
GTGTGAGTATTTTGTGCTGTCGGATGTATGGGAGAAGAGAGCTAGAGAAG
GTTTGATACAAGGTCAAATTGGAAGTGGTAGAGATTGTACAGCCTGTTGC
CTTGGAATGAAAAGATGTGTGTGCAATGAATCCTTCCGCTGAATTTGAGA
GAGCGCGTCCTCAAAAGTGGAAACATGTCTACAATTTGTTACCCGTTATA
TCCCGCCACTTTGCGCGCAATGCCGTGGAGTTTCGCTGTTGTATTGTACT
ACATTACAGTAGTCCCGAGACGCTGGAGAATTCTCTTGGGATTTTATTCA
AAATGTGTTACTCTTCAACTTGGTTATGCTAATTGTACAGGTTCTTCTCC
TTGTCTTTATTTGCTTGAGAGTTTGGTTGCCTTTTGTACATAGTTTTAGT
CAACACAATTTCTTTTTGAGGTGAGCCTGATGGGAGTTCACTGCTGCTAA
AGTTCAAATCGCAAGAACGGTCCAATATTATCCTATGGTCTGCAGTAATA
GATTATTACTGAGGGCCCAAGGGGTTAACACGGAGCGGCTATAGTGAGCG
TCTCGTGCTCGCCTCGTCCGACCTTGGTAGCAATGTTCTCGTTGTTGTTT
TATTATGTTCGCCAGAAATGATACAGTTACTCCATTTTGACTGTAGACAG
GGGCTTTCTGACGCAGGTTCAGTGCCTCTTTTCCCGGTCACCTTTGGAGC
TTTTTCAACTGAAGGGGAGGACAAGTATCCACTTTCGGTGATAAATTGTC
TTAATTTTAGAATGAGATAATCTCGGAACAACTTTTCTGGCCATTGTCTT
TGGGCGTAGCGCGTTCAATTTTAAATCTTGGGTTAGATGCGATTTGCTCA
CTCGATGAATTGGGCATGGTGCGCGATGTTGATGCCGAAAATCAAGTCTG
AATCCGAACTATTCAGGCGTCTAGCTCGAAAAGTAGAGCCTGTTATCGTG
TTGCCCTCTCTTTCAGTTGAAACGGCTCACAGCAAAAGCCAAAACATAAG
TCTGAGAATCCTGGTAGTGAGGTATGAGTTTCAGAATGCACGGACACATG
GAATCAAATACCGACCCCTATCCATTCGATTTACGAATATTATTGGCAGT
CGTGGATAGTCCGGGGCACATACAATACAAGAGCTCATTCTGAATATGCC
AATTATTTGTGTTTGTCTGAGGGGTGAAACAGTAATGTCTTCTCGGCTCG
CAACCCTCTTCAAATTAGTTTCTTGTATGGGAATGGCATTGTACCTTGAA
ATCCAACATGCGGGACCGTAAGAACCATGTGACGAAACATTCTACTACAA
TTTTCCGGCACTGTGTGTTGTCATACGATACCTGAGCTCGCTCAGCATAA
CAACAAAATTTGTGTTTAGCTTCCCAGCTCTCTCCTTGCTGCCGTTAAAG
CTGAAAAACATGGAATAAAATGAGGGATCCTCACGAATAACAATAGTGTA
ACCTGTCAATTGTGTTCATACCGCACAAAGCGGGGGGCGTTGATACTGCC
ATGAAATCAATCCGTCGCCACAACGCTGACTTCCCTGCCCTTGTTTTCCT
TCGCTCCAGGAGCTGGTTCTCCTGAACGACCACAGGGGAACAAGTGACCA
ACAACTCCGAAGTGTGGTGCCGGAGGCTCTAGAGTGCATCGGTGGGGCTG
ACGTGTTCATCAGCAGCGAAGACGAGTTTTCACGGGCAGCCGCCGCGCTC
TCGCACAACGTGAAGGTTCTCACAGAGCGGTGGGAAGAGAACGCTGACGA
GGATGAGCAAATGGTCCGCCTTGATGTAGCGACAACTGTCGCTGGCGTGG
AGGATGACGTGCGAGACCAGTTGAAGAGAGTCGTAGGGGAGTGGAGGGAA
TGTTCCTTGGAAGCGCAGTTTCCTCGTGCCAAGGCATGATTATTAGTTTT
CCTTTTCGTACGTTGCACCACCGTAGGCAATCGGGTAGAACACTTCCTGT
GGGGACGTGAAAATTGCTTTCTACGGATTATTTTTCCCGATGTCGGTCTT
GCGATTTCTTGTTTGGTAAAGTAGATCCGGACGAAGCGGGGGAGACGGAG
GTCTTGGTCCGAATTTGTCTGGCGGTTTCGCGTGACATGAGTTGGTAATT
TGTTGTATGCGCGCAAGCCCACATTATTTGAGCCAAATGTGCTGGCTAGA
CGAAGCGTTCCAGCATGAGTTCTTAATGTGTAACTAGCTGCACACGAGAG
AGACGAAATCTGCACATGCGGCGCCACCAGCTTGTGTTCGTTTCGTTCTG
CGGTGATGTTGGTGTTGATTGTCAATATTCTTGTCTGTGTTCGCGAGCGG
TTCCCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13867:2606..5261-

>mRNA_H-paniculata_contig13867.2371.1 ID=mRNA_H-paniculata_contig13867.2371.1|Name=mRNA_H-paniculata_contig13867.2371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig13867:2606..5261- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTGACCCTGAACGCCATATCTCGCGTGGAACCAGCAGCGAATGT
GGACGTTGTGGTGTTCAGCGAGGGTCGGTGGGGGGAGATGGTGGATGAAC
AGGGTGTGTCGACCGACTGGAACATCGGGAGCGAGATCTGCGAGGAGCTC
GGGCTGCAGTGCTCTCAGATGGAGGTGACCCTGAACGCCATATCTCGCGT
GGAACCAGCAGCGAATGTGGACGTTGTGGTGTTCAGCGAGGGTCGGTGGG
GGGAGATGGTGGATGAACAGGGTGTGTCGACCGACTGGAACATCGGGAGC
GAGATCTGCGAGGAGCTCGGGCTGCAGTGCTCTCAGGAGCTGGTTCTCCT
GAACGACCACAGGGGAACAAGTGACCAACAACTCCGAAGTGTGGTGCCGG
AGGCTCTAGAGTGCATCGGTGGGGCTGACGTGTTCATCAGCAGCGAAGAC
GAGTTTTCACGGGCAGCCGCCGCGCTCTCGCACAACGTGAAGGTTCTCAC
AGAGCGGTGGGAAGAGAACGCTGACGAGGATGAGCAAATGGTCCGCCTTG
ATGTAGCGACAACTGTCGCTGGCGTGGAGGATGACGTGCGAGACCAGTTG
AAGAGAGTCGTAGGGGAGTGGAGGGAATGTTCCTTGGAAGCGCAGTTTCC
TCGTGCCAAGGCATGAGAGCTGGTTCTCCTGAACGACCACAGGGGAACAA
GTGACCAACAACTCCGAAGTGTGGTGCCGGAGGCTCTAGAGTGCATCGGT
GGGGCTGACGTGTTCATCAGCAGCGAAGACGAGTTTTCACGGGCAGCCGC
CGCGCTCTCGCACAACGTGAAGGTTCTCACAGAGCGGTGGGAAGAGAACG
CTGACGAGGATGAGCAAATGGTCCGCCTTGATGTAGCGACAACTGTCGCT
GGCGTGGAGGATGACGTGCGAGACCAGTTGAAGAGAGTCGTAGGGGAGTG
GAGGGAATGTTCCTTGGAAGCGCAGTTTCCTCGTGCCAAGGCATGA
back to top