mRNA_H-paniculata_contig13858.2364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13858.2364.1
Unique NamemRNA_H-paniculata_contig13858.2364.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Match: D7FK12_ECTSI (Outer dynein arm docking complex protein like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK12_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.540e-19
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 QELLHVNPPKLEDYSSSEESGSDDDDARPLTREELKGRTLNKMQRKN 141
            QEL+HVNPPKLED+SSSEESGSDDDDARPLTR+ELKGRTLNK+QRKN
Sbjct:  574 QELIHVNPPKLEDFSSSEESGSDDDDARPLTRDELKGRTLNKIQRKN 620
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BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Match: A0A7S2W848_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W848_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.790e-11
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 QELLHVNPPKLEDYSSSEESGSDDDDARPLTREELKGRTLNKMQRK 138
            QEL+HVNPPKL+DYSS E S  ++D+ RPLTR+ELK +TLN+M R+
Sbjct:  274 QELIHVNPPKLDDYSSDEGSSEEEDETRPLTRDELKAKTLNRMHRR 319
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BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Match: A0A7S3GTF5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTF5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.990e-10
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 QELLHVNPPKLEDYSSSEESGSDDDDARPLTREELKGRTLNKMQRK 138
            Q+LL VNPPK EDY S E  G DD D RPLTR+ELK RTLNK+ +K
Sbjct:  533 QDLLRVNPPKSEDYRSDESDGDDDGDTRPLTRDELKQRTLNKLTKK 578
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BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Match: A0A7S3ZW21_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW21_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.390e-9
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QELLHVNPPKLEDYSSSEESGSDDDDARPLTREELKGRTLNKM 129
            Q+L+HVNPPKLEDYSS EE   D+DD RPLTR+E+K +TL KM
Sbjct:  481 QDLIHVNPPKLEDYSSEEED--DNDDTRPLTRDEIKAKTLTKM 521
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BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Match: F0Y5D3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5D3_AURAN)

HSP 1 Score: 56.6 bits (135), Expect = 4.360e-8
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 QELLHVNPPKLEDYSSSEESGSDDDDARPLTREELKGRTLNKMQRK 138
            Q+L+HVNPPKLEDYSS       + + RPLTR+ELK +TLN+M R+
Sbjct:  507 QDLIHVNPPKLEDYSSEXXXXXXEGETRPLTRDELKAKTLNRMYRR 552
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BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Match: A0A7S1XXH8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXH8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.960e-8
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    4 ELLHVNPPKLEDYSSSEESGSDDDDARPLTREELKGRTLNKMQRK 138
            +L+HVNPPKLEDYS  +  G DDDD RPLTR+ELK RT N + ++
Sbjct:  535 DLIHVNPPKLEDYSEVDVDG-DDDDERPLTRDELKARTQNSISKR 578
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BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Match: K3WI31_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WI31_GLOUD)

HSP 1 Score: 51.6 bits (122), Expect = 2.150e-7
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 QELLHVNPPKLEDYSSSEE-SGSDDDDARPLTREELKGRTLNKMQRKN 141
            QE L +NPP LEDYSS +E SG ++D+  PLTR+ELK RTL  ++R N
Sbjct:    3 QEPLQINPPNLEDYSSEDEDSGDNEDNMHPLTRDELKVRTLKGLRRLN 50
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BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Match: A0A7S0XDM7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDM7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.330e-7
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 QELLHVNPPKLEDYSSSEESGSDDDDARPLTREELKGRTLNKMQRK 138
            Q+ +HVNPPKL+DY+S       D++ RPLT EELK +TLN++Q+K
Sbjct:  491 QDYIHVNPPKLDDYNSDXXXXXXDEETRPLTLEELKMKTLNRLQKK 536
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BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Match: A0A662YF36_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YF36_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.500e-6
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 QELLHVNPPKLEDYSSS-EESGSDDDDARPLTREELKGRTLNKMQRKN 141
            QE L +NPP L+DYSS  E+SG ++D   PLTR+ELK RTL  M+R N
Sbjct:  548 QEPLQINPPNLDDYSSEGEDSGDNEDSMHPLTRDELKVRTLKGMRRLN 595
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BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Match: A0A5D6YBI8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBI8_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.780e-6
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 QELLHVNPPKLEDYSSSEE-SGSDDDDARPLTREELKGRTLNKMQR 135
            QE L +NPP LEDYSS ++ SG +DD+  PLTR+ELK RTL  ++R
Sbjct:  528 QEPLQINPPNLEDYSSEDDDSGDNDDNMHPLTRDELKVRTLKGLRR 573
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13858.2364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FK12_ECTSI4.540e-1991.49Outer dynein arm docking complex protein like n=1 ... [more]
A0A7S2W848_9STRA2.790e-1165.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3GTF5_9STRA3.990e-1067.39Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3ZW21_9STRA1.390e-969.77Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y5D3_AURAN4.360e-858.70Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S1XXH8_9STRA5.960e-862.22Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K3WI31_GLOUD2.150e-758.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S0XDM7_9STRA5.330e-754.35Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A662YF36_9STRA3.500e-658.33Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A5D6YBI8_9STRA4.780e-658.70Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13858contigH-paniculata_contig13858:988..1128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue8.5e-16
Seed eggNOG ortholog2880.D7FK12
Preferred nameODA1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036157,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
EggNOG free text desc.outer dynein arm assembly
EggNOG OGs28K4A@1,2QSIU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.407845-CDS-H-paniculata_contig13858:987..11281622929101.407845-CDS-H-paniculata_contig13858:987..1128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13858 988..1128 -
1691480731.762377-CDS-H-paniculata_contig13858:987..11281691480731.762377-CDS-H-paniculata_contig13858:987..1128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13858 988..1128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13858.2364.1prot_H-paniculata_contig13858.2364.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13858 988..1128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13858.2364.1

>prot_H-paniculata_contig13858.2364.1 ID=prot_H-paniculata_contig13858.2364.1|Name=mRNA_H-paniculata_contig13858.2364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
QELLHVNPPKLEDYSSSEESGSDDDDARPLTREELKGRTLNKMQRKN
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mRNA from alignment at H-paniculata_contig13858:988..1128-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13858.2364.1 ID=mRNA_H-paniculata_contig13858.2364.1|Name=mRNA_H-paniculata_contig13858.2364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig13858:988..1128- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACTTCTCCATGTGAACCCACCGAAGTTGGAGGATTATTCTTCCTC
AGAAGAGAGTGGAAGCGACGACGACGACGCCAGACCGTTAACGCGGGAAG
AGCTGAAAGGTCGCACTCTTAACAAGATGCAGCGCAAAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig13858:988..1128-

>mRNA_H-paniculata_contig13858.2364.1 ID=mRNA_H-paniculata_contig13858.2364.1|Name=mRNA_H-paniculata_contig13858.2364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig13858:988..1128- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACTTCTCCATGTGAACCCACCGAAGTTGGAGGATTATTCTTCCTC
AGAAGAGAGTGGAAGCGACGACGACGACGCCAGACCGTTAACGCGGGAAG
AGCTGAAAGGTCGCACTCTTAACAAGATGCAGCGCAAAAATCAGGAACTT
CTCCATGTGAACCCACCGAAGTTGGAGGATTATTCTTCCTCAGAAGAGAG
TGGAAGCGACGACGACGACGCCAGACCGTTAACGCGGGAAGAGCTGAAAG
GTCGCACTCTTAACAAGATGCAGCGCAAAAAT
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