mRNA_H-paniculata_contig13855.2363.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13855.2363.1
Unique NamemRNA_H-paniculata_contig13855.2363.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 3.900e-77
Identity = 167/460 (36.30%), Postives = 244/460 (53.04%), Query Frame = 2
Query:  119 KIDEQGNVTKPKARLVARGFSQHHNVDFLEVFAPRLAASSVKMVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLNKAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILCAHVDDVIVPGKSVECNSLFAALRAEFQTTR-GELKWYLGCSFWRDIVRG-VAASRNGH--SLILSFNVLTWKP---SLTFLRLS------------RQILGLG-W---RMRSCLTSLCARLGR------------------------------------DLNLSVYVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSEAKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTSAGRRKHIDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERHGRFLMNLPE 1321
            K DE G + K KARLVA+GF Q H +D+L  F+P   A+S+++++A+  + +  +  LD++Q F+Q  L+  VFMKL   CG  S ++VRLNK++YG KQ  R    RLV  L   +   QS S+PCV R      V  ++  HVDD++  G      ++ AAL     T   GE+K++LGC+F RD   G +  S+  +  S++  FNV+       S T +  S            R+++G   W   + R  ++++   + R                                    D+   VYVD D+A K+  RRSVSG  V + G +V  TS TQ CV  STSEA+Y+ M  G K ALF   +L+FL+P    R I +LEDN+GA  +A+NP S+GRRKHID+R+HF+R L     +++ +   ++Q ADIL K L R  FE H  F++ L E
Sbjct:  221 KADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDL-KRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVMENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLSE 679          
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 8.130e-76
Identity = 171/458 (37.34%), Postives = 245/458 (53.49%), Query Frame = 2
Query:  119 KIDEQGNVTKPKARLVARGFSQHHNVDFLEVFAPRLAASSVKMVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLNKAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILCAHVDDVIVPGKSVECNSLFAALRAEFQTTR-GELKWYLGCSFWRDIVRG---VAASRNGHSLILSFNV----------------------------------LTW-----KPSLTFL--RLSRQILGLGWRMRSCLTSLCARL------------GRDLNLSVYVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSEAKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTSAGRRKHIDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERHGRFLMNLPE 1321
            K +++G +   KARLVARGFSQ  NVD+    +P  +++S+K+++AV  E    +   DVKQ +  A L+ EVF+KL   CG+KS +I +  +A+YG KQ GR       + LV N    Q K++PCVFR     VV MI+  +VDD++V G   +C  L A+L  +F T   GE +W+ GC+  RD+  G   ++ +    S++  F+V                                  + W     +P ++F    ++R       R    +  +   L            G  L L+VYVD  YAD  + RRSVSG+A  +GG VV+  S TQ  V+LS++EA+Y+   +G K ALF RAVL F+ P+ SG  I +LEDNQGA  + +NP S+GR KHID+RYHFIR L     + V++    +Q AD+L K L R S + H R LMNLPE
Sbjct:  791 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1246          
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 1.240e-75
Identity = 160/406 (39.41%), Postives = 222/406 (54.68%), Query Frame = 2
Query:  119 KIDEQGNVTKPKARLVARGFSQHHNVDFLEVFAPRLAASSVKMVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLNKAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILCAHVDDVIVPGKSVECNSLFAALRAEFQTTR-GELKWYLGCS-FWRDI---VRGVAASRNGHSLILSFNVLTWKPSLTFLRLSRQILGLGWRMRSCLTSLCARLGRDLNLSVYVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSEAKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTSAGRRKHIDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERHGRFLMNLPE 1321
            K +++G +   KARLVARG SQ  NVD+    +P  +++S+K+++AV  E    +   DVKQ +  A L+ EVF+KL   CG+KS +I +  +A+YG KQ GR       + LV N    Q K++PCVFR     VV MI+  +VDD++V G   +C  L A+L  +F T   GE +W+ GC+   RD+                                                   +  + G  L L+VYVD  YAD  + RRSVSG+A  +GG VV+  S TQ  V+LS++EA+Y+   +G K ALF RAVL F+ P+ SG  I +LEDNQGA  + +NP S+GR KHID+RYHFIR L     + V++    +Q AD+L K L R S + H R LMNLPE
Sbjct:  452 KTNQEGKIDTLKARLVARGVSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAAIERDVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSMVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 855          
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.690e-75
Identity = 171/458 (37.34%), Postives = 245/458 (53.49%), Query Frame = 2
Query:  119 KIDEQGNVTKPKARLVARGFSQHHNVDFLEVFAPRLAASSVKMVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLNKAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILCAHVDDVIVPGKSVECNSLFAALRAEFQTTR-GELKWYLGCSFWRDIVRG---VAASRNGHSLILSFNV----------------------------------LTW-----KPSLTFL--RLSRQILGLGWRMRSCLTSLCARL------------GRDLNLSVYVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSEAKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTSAGRRKHIDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERHGRFLMNLPE 1321
            K +++G +   KARLVARGFSQ  NVD+    +P  +++S+K+++AV  E    +   DVKQ +  A L+ EVF+KL   CG+KS +I +  +A+YG KQ GR       + LV N    Q K++PCVFR     VV MI+  +VDD++V G   +C  L A+L  +F T   GE +W+ GC+  RD+  G   ++ +    S++  F+V                                  + W     +P ++F    ++R       R    +  +   L            G  L L+VYVD  YAD  + RRSVSG+A  +GG VV+  S TQ  V+LS++EA+Y+   +G K ALF RAVL F+ P+ SG  I +LEDNQGA  + +NP S+GR KHID+RYHFIR L     + V++    +Q AD+L K L R S + H R LMNLPE
Sbjct: 1170 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1625          
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.750e-75
Identity = 171/458 (37.34%), Postives = 245/458 (53.49%), Query Frame = 2
Query:  119 KIDEQGNVTKPKARLVARGFSQHHNVDFLEVFAPRLAASSVKMVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLNKAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILCAHVDDVIVPGKSVECNSLFAALRAEFQTTR-GELKWYLGCSFWRDIVRG---VAASRNGHSLILSFNV----------------------------------LTW-----KPSLTFL--RLSRQILGLGWRMRSCLTSLCARL------------GRDLNLSVYVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSEAKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTSAGRRKHIDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERHGRFLMNLPE 1321
            K +++G +   KARLVARGFSQ  NVD+    +P  +++S+K+++AV  E    +   DVKQ +  A L+ EVF+KL   CG+KS +I +  +A+YG KQ GR       + LV N    Q K++PCVFR     VV MI+  +VDD++V G   +C  L A+L  +F T   GE +W+ GC+  RD+  G   ++ +    S++  F+V                                  + W     +P ++F    ++R       R    +  +   L            G  L L+VYVD  YAD  + RRSVSG+A  +GG VV+  S TQ  V+LS++EA+Y+   +G K ALF RAVL F+ P+ SG  I +LEDNQGA  + +NP S+GR KHID+RYHFIR L     + V++    +Q AD+L K L R S + H R LMNLPE
Sbjct: 1333 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1788          
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.590e-73
Identity = 161/455 (35.38%), Postives = 235/455 (51.65%), Query Frame = 2
Query:  119 KIDEQGNVTKPKARLVARGFSQHHNVDFLEVFAPRLAASSVKMVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLNKAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILCAHVDDVIVPGKSVECNSLFAALRAEFQTTR-GELKWYLGCSFWRDIVRG---VAASRNGHSLILSFNV----------------------------------LTW-----KPSLTFL--RLSRQILGLGWRMRSCLTSLCARL------------GRDLNLSVYVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSEAKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTSAGRRKHIDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERHGRFLMN 1312
            K ++ G + K KARLVARGFSQ  NVD+    +P  +++S+K+++AV  E    +   DVKQ F  A L+ +VF++L   CG KS ++V+  +A+YG KQ GR       + LV N    Q K++PCVFR  +  VV        D ++V G   +C  L A+L   F T   GE  W+ GC+  RD+  G   ++ +    S++  F+V                                  + W     +P ++F    ++R       R    +  + A L            G  L L+VYVD  YAD  + RRSVSG+A  +GG V++  S TQ  V+LS++EA+Y+   +G K ALF RAVL F+ P+ SG  I +LEDNQGA  + +NP S+ R KHID+RYHFIR L     + +++    +Q AD+L K L + S + H R LMN
Sbjct:   54 KTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506          
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 1.830e-73
Identity = 170/475 (35.79%), Postives = 243/475 (51.16%), Query Frame = 2
Query:   65 TVCGKVP-TLSVRDG--YLHGKIDEQGNVTKPKARLVARGFSQHHNVDFLEVFAPRLAASSVKMVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLNKAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILCAHVDDVIVPGKSVECNSLFAALRAEFQTTR-GELKWYLGCSFWRDIVRG-VAASRNGH--SLILSFNV----------------------------------LTWKPSLTFLRLSRQILGLG----------WRMRSCLTSLCARLGR-----------DLNLSVYVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSEAKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTSAGRRKHIDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERHGRF 1303
            T+  KVP + +V D       K DE G + K KARLVA+GF Q + VD+LE F+P   A+S ++V+A+  + +  +   D++Q F+Q+ L++EVFMKL   CG+ S ++VRLNK++YG KQ  R   KRLV  L   +   QS S+PCV R      V  ++  HVDD++  G       + AAL     T   GE++++LGC+F RD   G +  S+  +  S++  FNV                                  L W  + T   +S  +  +           W+    + +                  D +  VYVD D+A K+N RRSVSG  V++    V   S TQ CV+ STSEA+Y+ M  G K ALF   +L+FL+P    R I +LEDN+GA  +AENP S+ R KHID+R+HF+R L    ++ V +   E+Q ADIL K L R  FE H  F
Sbjct:  481 TLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDF 954          
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 2.290e-72
Identity = 164/456 (35.96%), Postives = 235/456 (51.54%), Query Frame = 2
Query:  119 KIDEQGNVTKPKARLVARGFSQHHNVDFLEVFAPRLAASSVKMVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLNKAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILCAHVDDVIVPGKSVECNSLFAALRAEFQTTR-GELKWYLGCSFWRDIVRG-VAASRNGH--SLILSFNV----------------------------------LTWKPSLTFLRLSRQILGLG----------WRMRSCLTSLCARLGR-----------DLNLSVYVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSEAKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTSAGRRKHIDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERHGRFLM 1309
            K DE G + K KARLVA+GF Q + VD+LE F+P   A+S ++V+A+  + +  +   D++Q F+Q+ L++EVFMKL   CG+ S ++VRLNK++YG KQ  R   KRLV  L   +   QS S+PCV R      V  ++  HVDD++  G       + AAL     T   GE++++LGC+F RD   G +  S+  +  S++  FNV                                  L W  + T   +S  +  +           W+    + +                  D +  VYVD D+A K+N RRSVSG  V++    V   S TQ CV+ STSEA+Y+ M  G K ALF   +L+FL+P    R I +LEDN+GA  +AENP S+ R KHID+R+HF+R L    ++ V +   E+Q ADIL K L R  FE H  F +
Sbjct:  769 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFAL 1223          
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 5.760e-72
Identity = 163/456 (35.75%), Postives = 238/456 (52.19%), Query Frame = 2
Query:  119 KIDEQGNVTKPKARLVARGFSQHHNVDFLEVFAPRLAASSVKMVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLNKAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILCAHVDDVIVPGKSVECNSLFAALRAEFQTTR-GELKWYLGCSFWRDIVRG-VAASRNGH--SLILSFNV----------------------------------LTWKPSLTFLRLSRQILGLG----------WRMRSCLTS-------LCARLGRDLNLSV----YVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSEAKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTSAGRRKHIDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERHGRFLM 1309
            K DE G + K KARLVA+GF Q + VD+LE F+P   A+S ++V+A+  + +  +   D++Q F+Q+ L+ EVFMK+   CG+ S+++VRLNK++YG KQ  R   KRLV  L   +   QS S+PCV R      V  ++  HVDD++  G       + AAL     T   GE+K++LGC + RD   G +  S+  +  S++  FN+                                  L W  S T   +S  +  +           W+    + +       L  +  RD ++ V    YVD D+A K+  RRSVSG  V +   +V   S TQ CV+ STSEA+Y+ M  G K ALF   +L+FL+P +  R I +LEDN+GA  +AENP S+ R KHID+R+HF+R L    ++ V +   ++Q ADIL K L R  FE H  F +
Sbjct:  943 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFAL 1397          
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 7.790e-72
Identity = 166/455 (36.48%), Postives = 241/455 (52.97%), Query Frame = 2
Query:  119 KIDEQGNVTKPKARLVARGFSQHHNVDFLEVFAPRLAASSVKMVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLNKAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILCAHVDDVIVPGKSVECNSLFAALRAEFQTTR-GELKWYLGCSFWRDIVRG-VAASRNGHSLIL--------SFNVLTW-----KPSLTFL--RLSRQILGLGWRMRSCLTSLCARL------------GRDLNLSVYVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSEAKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTSAGRRKH-------------------------IDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERHGRFLMNLPE 1321
            K +++G +   KARLVARGFSQ  NVD+    +P  +++S+K+++AV  E    +   DVKQ +  A L+ EVF+KL   CG+KS +I +  +A+YG KQ GR       + LV N    Q K++PCVFR     VV MI+  +VDD++V G   +C  L A+L  +F T   GE +W+ GC+  RD+  G +  S+  +   +        +   + W     +P ++F    ++R       R    +  +   L            G  L L+VYVD  YAD  + RRSV+G+A  +GG VV+  S TQ  V+LS++EA+Y+   +G K ALF RAVL F+ P+ SG  I +LEDNQGA  + +NP S+GR KH                         ID+R+HFI  LI    + V++    +Q AD+L K L R S + H   LMNLPE
Sbjct:  591 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVAGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHRREISFHRRIEFXVFVFDGSRVARNIDVRFHFIGGLIRSGDISVKFVPTTEQHADLLTKALSRASLKYHRHKLMNLPE 1043          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13855.2363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV1_9PHAE3.900e-7736.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE8.130e-7637.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JU90_9PHAE1.240e-7539.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.690e-7537.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.750e-7537.34Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JCG0_9PHAE1.590e-7335.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE1.830e-7335.79Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE2.290e-7235.96Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KZH7_9PHAE5.760e-7235.75Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTV6_9PHAE7.790e-7236.48Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13855contigH-paniculata_contig13855:69..1559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score133.3
Seed ortholog evalue2.3e-28
Seed eggNOG ortholog15368.BRADI3G60275.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size1324
Cds size1080
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13855.2363.1prot_H-paniculata_contig13855.2363.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13855 69..1315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.3145072-CDS-H-paniculata_contig13855:68..5551622929101.3145072-CDS-H-paniculata_contig13855:68..555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13855 69..555 -
1691480731.723926-CDS-H-paniculata_contig13855:68..5551691480731.723926-CDS-H-paniculata_contig13855:68..555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13855 69..555 -
1622929101.3308725-CDS-H-paniculata_contig13855:722..13151622929101.3308725-CDS-H-paniculata_contig13855:722..1315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13855 723..1315 -
1691480731.73663-CDS-H-paniculata_contig13855:722..13151691480731.73663-CDS-H-paniculata_contig13855:722..1315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13855 723..1315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.3502958-UTR-H-paniculata_contig13855:1315..15591622929101.3502958-UTR-H-paniculata_contig13855:1315..1559Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13855 1316..1559 -
1691480731.7528596-UTR-H-paniculata_contig13855:1315..15591691480731.7528596-UTR-H-paniculata_contig13855:1315..1559Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13855 1316..1559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13855.2363.1

>prot_H-paniculata_contig13855.2363.1 ID=prot_H-paniculata_contig13855.2363.1|Name=mRNA_H-paniculata_contig13855.2363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=360bp
MVIAVGVETDWGMWQLDVKQTFIQANLEFEVFMKLRESCGNKSDRIVRLN
KAMYGFKQGGRMSSKRLVEVLVNNVSMTQSKSEPCVFRLERSGVVDMILC
AHVDDVIVPGKSVECNSLFAALRAEFQTTRGELKWYLGCSFWRDIVRGVA
ASRNGHSLILSFNVLTWKPSLTFLRLSRQILGLGWRMRSCLTSLCARLGR
DLNLSVYVDEDYADKSNWRRSVSGVAVMLGGGVVNATSTTQHCVTLSTSE
AKYVVMAQGAKAALFTRAVLEFLQPQLSGRIITILEDNQGAKPMAENPTS
AGRRKHIDLRYHFIRELIARKLLRVEYKKGEDQPADILAKPLERGSFERH
GRFLMNLPE*
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mRNA from alignment at H-paniculata_contig13855:69..1559-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13855.2363.1 ID=mRNA_H-paniculata_contig13855.2363.1|Name=mRNA_H-paniculata_contig13855.2363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1491bp|location=Sequence derived from alignment at H-paniculata_contig13855:69..1559- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAATGAGGCAGTCAGAGTAGAGGTTGAGGGCTTGGAAAGTCTCAAAGC TTGCACTTATGTAGACAGTGTGCGGAAAGGTTCCAACGTTGTCAGTGCGA GATGGGTATTTGCATGGAAAAATTGATGAGCAGGGGAATGTTACAAAGCC AAAGGCAAGGCTTGTAGCTCGAGGGTTTAGTCAGCACCACAACGTTGATT TTCTCGAAGTGTTTGCTCCTAGGTTAGCCGCTTCCAGTGTGAAGATGGTA ATTGCTGTTGGTGTCGAAACCGACTGGGGAATGTGGCAACTTGATGTAAA ACAGACTTTTATTCAGGCAAATCTAGAGTTCGAGGTGTTCATGAAGCTTC GAGAGAGTTGCGGGAACAAGAGCGATAGGATAGTAAGGCTGAATAAGGCT ATGTATGGGTTCAAGCAGGGAGGACGAATGTCGTCAAAGCGCCTGGTAGA AGTACTCGTAAACAACGTCAGCATGACGCAATCCAAGTCTGAGCCTTGTG TGTTTAGGCTGGAGAGAAGTGGGGTGGTAGATATGATTCTGTGTGCTCAT GTCGATGATGTAATTGTTCCTGGTAAAAGTGTGGAGTGCAATTCCCTGTT TGCGGCGTTAAGGGCGGAGTTCCAAACCACGAGAGGCGAGCTCAAGTGGT ACCTGGGTTGCTCATTTTGGCGTGACATAGTGAGGGGAGTTGCCGCATCA CGCAACGGACATTCGTTGATACTGTCATTCAACGTTTTGACGTGGAAACC GAGTCTAACCTTCCTGCGTCTCAGCAGGCAGATCTTGGGCCTAGGATGGA GGATGAGGAGTTGTCTGACAAGCCTGTGCGCTCGACTGTTGGGAGTTTGA TATGGTTAAGTGGTATGACGAGAACCGACATAGGCAGTGCAGTACGGGCA GTAGCGAGGCAAGCCCACAATCCGACGGATAGGCACTGGAAAACAGTGGT AAAGATCATCTCGTATCTCAAGAGAACAAAAGACTTGGGGCTAGTGTTGG AAAGGGGTAGAGATCTTAATCTGTCAGTGTATGTAGACGAAGATTATGCG GACAAGTCCAACTGGAGGCGTTCAGTGTCAGGCGTGGCAGTAATGTTAGG GGGGGGCGTAGTGAATGCTACCAGCACGACACAACACTGTGTGACTCTTT CCACTAGTGAGGCAAAATATGTAGTTATGGCGCAAGGGGCTAAGGCAGCA CTTTTCACGAGAGCCGTGCTAGAGTTCTTGCAGCCGCAACTTTCTGGTAG GATAATTACGATACTCGAAGACAACCAGGGGGCAAAGCCTATGGCTGAGA ATCCAACTAGTGCGGGTAGGAGAAAGCACATAGACCTAAGGTATCATTTC ATTCGAGAATTGATTGCGAGGAAATTATTGAGGGTAGAATACAAGAAAGG TGAGGACCAACCGGCTGATATCCTGGCCAAACCGCTCGAGCGCGGGTCGT TTGAACGACATGGTCGTTTCTTGATGAATTTGCCTGAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13855:69..1559-

>mRNA_H-paniculata_contig13855.2363.1 ID=mRNA_H-paniculata_contig13855.2363.1|Name=mRNA_H-paniculata_contig13855.2363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2160bp|location=Sequence derived from alignment at H-paniculata_contig13855:69..1559- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAATTGCTGTTGGTGTCGAAACCGACTGGGGAATGTGGCAACTTGA
TGTAAAACAGACTTTTATTCAGGCAAATCTAGAGTTCGAGGTGTTCATGA
AGCTTCGAGAGAGTTGCGGGAACAAGAGCGATAGGATAGTAAGGCTGAAT
AAGGCTATGTATGGGTTCAAGCAGGGAGGACGAATGTCGTCAAAGCGCCT
GGTAGAAGTACTCGTAAACAACGTCAGCATGACGCAATCCAAGTCTGAGC
CTTGTGTGTTTAGGCTGGAGAGAAGTGGGGTGGTAGATATGATTCTGTGT
GCTCATGTCGATGATGTAATTGTTCCTGGTAAAAGTGTGGAGTGCAATTC
CCTGTTTGCGGCGTTAAGGGCGGAGTTCCAAACCACGAGAGGCGAGCTCA
AGTGGTACCTGGGTTGCTCATTTTGGCGTGACATAGTGAGGGGAGTTGCC
GCATCACGCAACGGACATTCGTTGATACTGTCATTCAACGTTTTGACGTG
GAAACCGAGTCTAACCTTCCTGCGTCTCAGCAGGCAGATCTTGGGCCTAG
GATGGAGGATGAGGAGTTGTCTGACAAGCCTGTGCGCTCGACTATGGTAA
TTGCTGTTGGTGTCGAAACCGACTGGGGAATGTGGCAACTTGATGTAAAA
CAGACTTTTATTCAGGCAAATCTAGAGTTCGAGGTGTTCATGAAGCTTCG
AGAGAGTTGCGGGAACAAGAGCGATAGGATAGTAAGGCTGAATAAGGCTA
TGTATGGGTTCAAGCAGGGAGGACGAATGTCGTCAAAGCGCCTGGTAGAA
GTACTCGTAAACAACGTCAGCATGACGCAATCCAAGTCTGAGCCTTGTGT
GTTTAGGCTGGAGAGAAGTGGGGTGGTAGATATGATTCTGTGTGCTCATG
TCGATGATGTAATTGTTCCTGGTAAAAGTGTGGAGTGCAATTCCCTGTTT
GCGGCGTTAAGGGCGGAGTTCCAAACCACGAGAGGCGAGCTCAAGTGGTA
CCTGGGTTGCTCATTTTGGCGTGACATAGTGAGGGGAGTTGCCGCATCAC
GCAACGGACATTCGTTGATACTGTCATTCAACGTTTTGACGTGGAAACCG
AGTCTAACCTTCCTGCGTCTCAGCAGGCAGATCTTGGGCCTAGGATGGAG
GATGAGGAGTTGTCTGACAAGCCTGTGCGCTCGACTGGGTAGAGATCTTA
ATCTGTCAGTGTATGTAGACGAAGATTATGCGGACAAGTCCAACTGGAGG
CGTTCAGTGTCAGGCGTGGCAGTAATGTTAGGGGGGGGCGTAGTGAATGC
TACCAGCACGACACAACACTGTGTGACTCTTTCCACTAGTGAGGCAAAAT
ATGTAGTTATGGCGCAAGGGGCTAAGGCAGCACTTTTCACGAGAGCCGTG
CTAGAGTTCTTGCAGCCGCAACTTTCTGGTAGGATAATTACGATACTCGA
AGACAACCAGGGGGCAAAGCCTATGGCTGAGAATCCAACTAGTGCGGGTA
GGAGAAAGCACATAGACCTAAGGTATCATTTCATTCGAGAATTGATTGCG
AGGAAATTATTGAGGGTAGAATACAAGAAAGGTGAGGACCAACCGGCTGA
TATCCTGGCCAAACCGCTCGAGCGCGGGTCGTTTGAACGACATGGTCGTT
TCTTGATGAATTTGCCTGAATGAGGGTAGAGATCTTAATCTGTCAGTGTA
TGTAGACGAAGATTATGCGGACAAGTCCAACTGGAGGCGTTCAGTGTCAG
GCGTGGCAGTAATGTTAGGGGGGGGCGTAGTGAATGCTACCAGCACGACA
CAACACTGTGTGACTCTTTCCACTAGTGAGGCAAAATATGTAGTTATGGC
GCAAGGGGCTAAGGCAGCACTTTTCACGAGAGCCGTGCTAGAGTTCTTGC
AGCCGCAACTTTCTGGTAGGATAATTACGATACTCGAAGACAACCAGGGG
GCAAAGCCTATGGCTGAGAATCCAACTAGTGCGGGTAGGAGAAAGCACAT
AGACCTAAGGTATCATTTCATTCGAGAATTGATTGCGAGGAAATTATTGA
GGGTAGAATACAAGAAAGGTGAGGACCAACCGGCTGATATCCTGGCCAAA
CCGCTCGAGCGCGGGTCGTTTGAACGACATGGTCGTTTCTTGATGAATTT
GCCTGAATGA
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