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Homology
BLAST of mRNA_H-paniculata_contig13841.2356.1 vs. uniprot
Match: D7FWC6_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC6_ECTSI) HSP 1 Score: 304 bits (779), Expect = 1.030e-89 Identity = 202/391 (51.66%), Postives = 244/391 (62.40%), Query Frame = 1
Query: 1 GRRAATRAGTTDTITRK---TGNPMQAATTGDLSDALGVRAMGESAARVVIARMMINRKRRLLRHKEEKGHALQPKRAKADDRNDRPAARRV---------GFSSIKSKGGR----------VFGGTNKWMGTESGGDEGNVVFQTVLSSMAKHSMREGLKEISSNPHDLLRVGFLEIQPAKHGSTALGCHLINGWAEQIAGNQRRARGHYCRAVATEPENVDALFCKAVVSAKLGEYFDALKDLSAAISFY----HVQA--SCGVSATK--------AGRKGGYSNRSRKGGCGRDRGGDKRVGETGVDLAPLYFNRALVYVCLGDDTNALDDLDRALARETRNLTYRSNRALILRRVGDFRGAQQDYSRIRALQVLQQATAKRHAKQQT 1065
GRRAATRAG D + R+ NP + A+TG+L ALGV GE+AAR+VI RM+ NRK R+ + G + A A P ++R ++ + +GGR G + G SGG G +F+TVLSSMAK +REGL+EI SNP DLLR GF+E++P KHGSTALGCHLI GW EQ GN+ RA GH+ RAVA+EPENV+ALFCKAV+SA+L E FDALKD SAAISF H A G S TK +G G ++ V LA LY NRALV+VCLGDD +ALDDLDRA+AR+TRN+TYRSNRALILRRVGDFRGAQQDYSRIRALQ+L+Q A R A Q+T
Sbjct: 561 GRRAATRAGMFDEVLRRDQTNANPTEMASTGNLRSALGVVVTGEAAARLVIGRMIQNRKARMAKTAMSNGGEDGSRGAGACAYG--PISKRAPRGGLTGGRSMAAGRDRGGRGGSAGALKRKPVKGVSTSAGGVSGGLLGEGIFKTVLSSMAKKRLREGLQEIKSNPLDLLRRGFVEVEPTKHGSTALGCHLIKGWEEQTNGNKSRALGHFRRAVASEPENVEALFCKAVLSAQLMELFDALKDFSAAISFKLDETHRAALQQRGASNTKRPSNGVTASGSAGXXXXXXXXXXXXXXXXXXXXXXKSNVSLAHLYGNRALVHVCLGDDDSALDDLDRAVARDTRNITYRSNRALILRRVGDFRGAQQDYSRIRALQILEQTAADRSATQET 949
BLAST of mRNA_H-paniculata_contig13841.2356.1 vs. uniprot
Match: A0A6H5K1M1_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1M1_9PHAE) HSP 1 Score: 281 bits (718), Expect = 1.040e-81 Identity = 194/391 (49.62%), Postives = 231/391 (59.08%), Query Frame = 1
Query: 1 GRRAATRAGTTDTITRKTG---NPMQAATTGDLSDALGVRAMGESAARVVIARMMINRKRRLLRHKEEKGH-----------ALQPKRAKADDRNDRPAAR-RVGFSSIKSKGG-------RVFGGTNKWMGTESGGDEGNVVFQTVLSSMAKHSMREGLKEISSNPHDLLRVGFLEIQPAKHGSTALGCHLINGWAEQIAGNQRRARGHYCRAVATEPENVDALFCKAVVSAKLGEYFDALKDLSAAISFY----HVQA--SCGVSATK--------AGRKGGYSNRSRKGGCGRDRGGDKRVGETGVDLAPLYFNRALVYVCLGDDTNALDDLDRALARETRNLTYRSNRALILRRVGDFRGAQQDYSRIRALQVLQQATAKRHAKQQT 1065
GRRAATRAG D + R NP + ATTG+L ALGV GE+AAR VI RM+ NRK ++ + KG +K DR + R +V + +GG + G + G SGG G +F+TVLSSMAK +REGL EI SNP DLLR GF E++PAKHGSTALGCHLI GW EQ GN+ RA GH+ RAVA+EPENV+ALFCKAV+SA+L E FDALKD SAAISF H A G S TK +G G R GG R G GE+ V LA LY NRALV+VCLGDD +ALDDLDRA+AR+TRN+T GAQQDYSRIRALQ+L+Q R+A Q+T
Sbjct: 226 GRRAATRAGMFDEVLRSDQTNVNPTETATTGNLRSALGVVVTGEAAARAVIGRMIRNRKAKMAKTAMSKGGEDCSSGVTVGACAHGPISKGADRGGKTGGRSKVACGDREGRGGSAGVLKNKPAKGVSISAGGVSGGLLGEGIFKTVLSSMAKKRLREGLHEIKSNPLDLLRRGFAEVEPAKHGSTALGCHLIKGWEEQKNGNKSRALGHFRRAVASEPENVEALFCKAVLSAQLMELFDALKDFSAAISFKLDETHRAALRQSGASNTKRPSNWVTASGNAAGVYTHGRDGGEARTGQGGGTSGESNVSLAHLYGNRALVHVCLGDDDSALDDLDRAVARDTRNIT----------------GAQQDYSRIRALQMLEQTATDRNAIQET 600
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1065 |
| Cds size | 1065 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13841.2356.1 >prot_H-paniculata_contig13841.2356.1 ID=prot_H-paniculata_contig13841.2356.1|Name=mRNA_H-paniculata_contig13841.2356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=355bp
GRRAATRAGTTDTITRKTGNPMQAATTGDLSDALGVRAMGESAARVVIAR
MMINRKRRLLRHKEEKGHALQPKRAKADDRNDRPAARRVGFSSIKSKGGR
VFGGTNKWMGTESGGDEGNVVFQTVLSSMAKHSMREGLKEISSNPHDLLR
VGFLEIQPAKHGSTALGCHLINGWAEQIAGNQRRARGHYCRAVATEPENV
DALFCKAVVSAKLGEYFDALKDLSAAISFYHVQASCGVSATKAGRKGGYS
NRSRKGGCGRDRGGDKRVGETGVDLAPLYFNRALVYVCLGDDTNALDDLD
RALARETRNLTYRSNRALILRRVGDFRGAQQDYSRIRALQVLQQATAKRH
AKQQT back to topmRNA from alignment at H-paniculata_contig13841:3084..6520- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig13841.2356.1 ID=mRNA_H-paniculata_contig13841.2356.1|Name=mRNA_H-paniculata_contig13841.2356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3437bp|location=Sequence derived from alignment at H-paniculata_contig13841:3084..6520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGACGGGCAGCTACTCGTGCGGGGACGACAGACACGATAACGCGGAA
AACAGGAAATCCCATGCAAGCGGCAACAACCGGAGATTTGAGCGACGCCT
TGGGCGTTCGAGCAATGGGGGAGAGTGCAGCTCGAGTAGTGATAGCAAGA
ATGATGATAAACCGAAAACGGCGGTTGCTGCGGCACAAAGAAGAGAAAGG
ACATGCGCTTCAGCCAAAACGCGCGAAGGCAGACGACAGGAATGACCGAC
CTGCTGCAAGACGAGTGGGGTTTAGCAGCATAAAATCGAAGGGCGGGAGG
GTTTTTGGCGGTACCAATAAGTGGATGGGCACAGAGAGCGGAGGAGACGA
GGGCAATGTAGTTTTTCAGACAGTGCTTTCTTCGATGGCGAAGCACAGCA
TGAGGGAGGGACTAAAGGAGATATCCTCCAATCCGCACGACTTGTTACGA
GTAGGGTTCTTGGAGATACAGCCTGCAAAGCATGGCAGCACGGCGTTGGG
GTGTCATCTAATCAACGGGTGGGCCGAACAGATCGCTGGAAATCAAAGAC
GGGTGAGCCAATTGCACCCTGGTCATGAAGGAGTAGGGGCATGCATGCGG
TAAGACAGGGAAGCGCACTGTTTTGCTTTTCCCTGATATTAGAGGTGGAG
ACCGCAAAGTGTTGCGCCGGAATCTGGACAAGCATTGAGCAATGTGTCTT
GACTAGGCTCGATTGATGAATAAGCCTTTCGACACTGGCGCGCCCGCTCT
TGTATCATCGGTACCACCAGTGTACACAGTACCCAGAGCACTGACACGAA
GATATGTCATCGCTCGTTGTGCCCACGTCATACGGGATACTGTTCTTGCC
TTTTGGTGCCATATCTAGCAGGCACGGGGTCACTACTGTAGAGCAGTGGC
CACGGAGCCGGAGAATGTGGACGCGCTTTTCTGCAAGGCCGTTGTGAGCG
CAAAGCTAGGGGAGTACTTCGATGCTCTCAAGGTACAGTTGGATCATACC
AGTACGGTGGTCCACCCAAAACACGTCATCACTCGAACTGCGAATAAATC
GCTGAGGCTAAAGCAGTCAAATCAGTCATATGCACGACGGCACAGTGAAA
ACGTGCATCGTAACCCGTGAAATATGTACTACTCGAAGGTCTACGCATGC
TTCTTTCCCGCTTAGTACTGAGCGTTACCAGCCTGAAGCTGTGTGGCTTT
ACTCCTCTTGGTCTTTCGCAGACGACCGGCGTCTATTTTGTTCATTTTGG
TTGCTTCTGCAGTTTCCTCACCATAGATCGTGTGTCAACACCCTTGACCA
AAACAATTGTGGACAGGATCTTTCTGCAGCTATCAGTTTCTATCACGTCC
AGGCGTCTTGTGGAGTCAGCGCCACCAAAGCTGGCAGGAAAGGGGGCTAC
AGCAACAGAAGCCGAAAAGGTGGGTGTGCTCAGTGTACAGGCTTCGTTTG
ATAAGGCAGAGGTCAGTTGAAACGACTGTATCGCCAGAAGCAACCAGTGT
CTTTGCTCCCTACCAGTATGCCTCCATACCACAGATCCGCCATTCAGACG
ACCAGTGACATGTTGGCAGTAAAGCAGTTGGCATTTGTAGCCGAGCTTGT
ATCATCTACAGTCGAGAAGTTCCAGTATCAAGGTGTTCTGCACGGAAAAA
CCGTCGAACTGATTAGTCAGCTATGACTGCTACGTAGGTTCGCTGACTTA
CCTTGAGCTAGCTAAAGAAACTTAGAGTCATTTCTAGTGAGCATTGTTTG
GGCGAAAATCACGAAATTTCGAAATCTAGGTATTTGAGATGGGACGTAGA
GAGAGACGCAAGTCTCAGAAATCGAGATTCCACACGAAGTCGATTCGAAA
AATTGGGACATGTTAACAGAAAGGACCCCTTGGGAATTTTGTAATTAGGC
CATTTCAACTCTTTTCGTGTCCCACCCCAAATTCCCAGTTACCAGATTTC
GTCATTTCCATCCAAAGAGTGCTCTCCAGGGATGATCCTCACGCCATGTT
GTAAAAGTTCCTCATCTCCCAACCACGCGCTATTTATCATCGATCATACT
AGGCGGCCGGGATAGAGGGGGTGACAAACGCGTTGGCGAGACTGGCGTGG
ATCTAGCACCCCTATACTTTAATCGCGCTTTGGTGTACGTTTGCCTCGGA
GACGATACCAATGCGCTTGATGATTTGGACAGAGCGCTGGCGCGAGAAAC
TCGAAATCTCACGTAAGTTCCATGTCAGCTTGACCATCCGTTATCCTGAT
CCTTTTGTCAACGAACACGCTCATAGAAATACCGCATAACCTCAATCTCG
CGTAACGTTCTTCAAACCTTCAATAAGGGCATGCACAACTTGTCGGACGT
TAGATTTCTAACGCGTCTTTGGGTATCCGTTTGCGATGTTGCTGTAGTGA
TCTTGATTGCATGGGCTGGGCCGGGACTACGGAAAATTGTAACCTCATGT
GAGTAACAACGACGGCGTACCATGTCGGTCGCGAAAAAGGAGATATATAA
GAGATTGCGGATCAGCAGGCAGATGCACGGGCACGAACAGCACTGTTTAT
CGATAGCCCCGAATGGCTCGTGGTTTGCAGATATCGGCATCGTTCTCTCT
TGTTTTACGTTAACAACAAACCGTTGAACTACCCCTGTCTAAACATTGCT
CCGCCGTTATACGTCACACCGATGATTCTACAGTTATCGATCAAACAGAG
CGTTGATCTTGAGGCGTGTCGGCGATTTTCGAGGAGCACAGCAGGACTAC
AGTAGAATCAGGGCCTTGCAGGTATGTCTAAGGGATCCGAGGCATTCAAG
TAACGAAGTGTGTAAGTATATTTTGCCCCGTAAGCACGGTATCATCGCGG
CTCTTCACAAACTAAGTGATCTTATGCCTAGTTAAAACACAACATATCCA
GGATTGTATCGTTTCAGTGTTTGAATTGAGCAACGGCGGATCGAAGGGAA
AATATTGACTTTTTCAAAAGACGTCGGGAGTGTTGCGCTGTGTTGGCGAA
GAATTCAAGCTGAAACATACGGTACACAACTACGAGCAGAATATAGTCGA
CGTTGCCATGCTAGACTGGTCGTATGTCTATCTTCCTGCCTTTTCGTGCA
TTGGGACAAGTCTGTACGAGTCAGCAATAATTTAGATGAATGAATGAGAT
CCGACACCTTCGCATGAGTTTCCTTTCCACCCCAGAGTGTACACCCTCTG
TATGCACCACTCGGAAGACCTTCGCATGAGTTGTCCGTGTTGCCAGACTG
AGTTGTTTTGTTGGTCTACCCACACCTTCCCAAATCGATGCCATCGATTG
ACGATACGTTGAAAACAAGAGCAGTTCCGCATCTGCGGTACGCATTTCGG
TAGGTTCCTCAAGCCGAACGACTGCGCCCTGTTAGTACATAGGTTCTGCA
ACAGGCGACAGCGAAGCGACACGCAAAGCAGCAGACA back to topCoding sequence (CDS) from alignment at H-paniculata_contig13841:3084..6520- >mRNA_H-paniculata_contig13841.2356.1 ID=mRNA_H-paniculata_contig13841.2356.1|Name=mRNA_H-paniculata_contig13841.2356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2130bp|location=Sequence derived from alignment at H-paniculata_contig13841:3084..6520- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGACGGGCAGCTACTCGTGCGGGGACGACAGACACGATAACGCGGAA
AACAGGAAATCCCATGCAAGCGGCAACAACCGGAGATTTGAGCGACGCCT
TGGGCGTTCGAGCAATGGGGGAGAGTGCAGCTCGAGTAGTGATAGCAAGA
ATGATGATAAACCGAAAACGGCGGTTGCTGCGGCACAAAGAAGAGAAAGG
ACATGCGCTTCAGCCAAAACGCGCGAAGGCAGACGACAGGAATGACCGAC
CTGCTGCAAGACGAGTGGGGTTTAGCAGCATAAAATCGAAGGGCGGGAGG
GTTTTTGGCGGTACCAATAAGTGGATGGGCACAGAGAGCGGAGGAGACGA
GGGCAATGTAGTTTTTCAGACAGTGCTTTCTTCGATGGCGAAGCACAGCA
TGAGGGAGGGACTAAAGGAGATATCCTCCAATCCGCACGACTTGTTACGA
GTAGGGTTCTTGGAGATACAGCCTGCAAAGCATGGCAGCACGGCGTTGGG
GTGTCATCTAATCAACGGGTGGGCCGAACAGATCGCTGGAAATCAAAGAC
GGGGAAGACGGGCAGCTACTCGTGCGGGGACGACAGACACGATAACGCGG
AAAACAGGAAATCCCATGCAAGCGGCAACAACCGGAGATTTGAGCGACGC
CTTGGGCGTTCGAGCAATGGGGGAGAGTGCAGCTCGAGTAGTGATAGCAA
GAATGATGATAAACCGAAAACGGCGGTTGCTGCGGCACAAAGAAGAGAAA
GGACATGCGCTTCAGCCAAAACGCGCGAAGGCAGACGACAGGAATGACCG
ACCTGCTGCAAGACGAGTGGGGTTTAGCAGCATAAAATCGAAGGGCGGGA
GGGTTTTTGGCGGTACCAATAAGTGGATGGGCACAGAGAGCGGAGGAGAC
GAGGGCAATGTAGTTTTTCAGACAGTGCTTTCTTCGATGGCGAAGCACAG
CATGAGGGAGGGACTAAAGGAGATATCCTCCAATCCGCACGACTTGTTAC
GAGTAGGGTTCTTGGAGATACAGCCTGCAAAGCATGGCAGCACGGCGTTG
GGGTGTCATCTAATCAACGGGTGGGCCGAACAGATCGCTGGAAATCAAAG
ACGGGCACGGGGTCACTACTGTAGAGCAGTGGCCACGGAGCCGGAGAATG
TGGACGCGCTTTTCTGCAAGGCCGTTGTGAGCGCAAAGCTAGGGGAGTAC
TTCGATGCTCTCAAGGCACGGGGTCACTACTGTAGAGCAGTGGCCACGGA
GCCGGAGAATGTGGACGCGCTTTTCTGCAAGGCCGTTGTGAGCGCAAAGC
TAGGGGAGTACTTCGATGCTCTCAAGGATCTTTCTGCAGCTATCAGTTTC
TATCACGTCCAGGCGTCTTGTGGAGTCAGCGCCACCAAAGCTGGCAGGAA
AGGGGGCTACAGCAACAGAAGCCGAAAAGGTGGGTGATCTTTCTGCAGCT
ATCAGTTTCTATCACGTCCAGGCGTCTTGTGGAGTCAGCGCCACCAAAGC
TGGCAGGAAAGGGGGCTACAGCAACAGAAGCCGAAAAGGTGGGTGCGGCC
GGGATAGAGGGGGTGACAAACGCGTTGGCGAGACTGGCGTGGATCTAGCA
CCCCTATACTTTAATCGCGCTTTGGTGTACGTTTGCCTCGGAGACGATAC
CAATGCGCTTGATGATTTGGACAGAGCGCTGGCGCGAGAAACTCGAAATC
TCACGCGGCCGGGATAGAGGGGGTGACAAACGCGTTGGCGAGACTGGCGT
GGATCTAGCACCCCTATACTTTAATCGCGCTTTGGTGTACGTTTGCCTCG
GAGACGATACCAATGCGCTTGATGATTTGGACAGAGCGCTGGCGCGAGAA
ACTCGAAATCTCACTTATCGATCAAACAGAGCGTTGATCTTGAGGCGTGT
CGGCGATTTTCGAGGAGCACAGCAGGACTACAGTAGAATCAGGGCCTTGC
AGTTATCGATCAAACAGAGCGTTGATCTTGAGGCGTGTCGGCGATTTTCG
AGGAGCACAGCAGGACTACAGTAGAATCAGGGCCTTGCAGGTTCTGCAAC
AGGCGACAGCGAAGCGACACGCAAAGCAGCAGACAGTTCTGCAACAGGCG
ACAGCGAAGCGACACGCAAAGCAGCAGACA back to top
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