mRNA_H-paniculata_contig13834.2352.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13834.2352.1
Unique NamemRNA_H-paniculata_contig13834.2352.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13834.2352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13834contigH-paniculata_contig13834:2967..3684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.5292687-CDS-H-paniculata_contig13834:2966..31231622929099.5292687-CDS-H-paniculata_contig13834:2966..3123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13834 2967..3123 -
1691480731.1218314-CDS-H-paniculata_contig13834:2966..31231691480731.1218314-CDS-H-paniculata_contig13834:2966..3123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13834 2967..3123 -
1622929099.5471523-CDS-H-paniculata_contig13834:3520..36841622929099.5471523-CDS-H-paniculata_contig13834:3520..3684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13834 3521..3684 -
1691480731.136057-CDS-H-paniculata_contig13834:3520..36841691480731.136057-CDS-H-paniculata_contig13834:3520..3684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13834 3521..3684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13834.2352.1prot_H-paniculata_contig13834.2352.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13834 2967..3684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13834.2352.1

>prot_H-paniculata_contig13834.2352.1 ID=prot_H-paniculata_contig13834.2352.1|Name=mRNA_H-paniculata_contig13834.2352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
ASVPGSSTGKRVKGDGALETLSITPMRDGFNLVSASSRRDASAAKGNDSK
SFSNWVNPVSDNSNSNNNRDDNNSARVCRSDAGFDGGQANGFSNSSTSNN
NATAGSL
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mRNA from alignment at H-paniculata_contig13834:2967..3684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13834.2352.1 ID=mRNA_H-paniculata_contig13834.2352.1|Name=mRNA_H-paniculata_contig13834.2352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=718bp|location=Sequence derived from alignment at H-paniculata_contig13834:2967..3684- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGCGTTCCTGGATCAAGCACGGGGAAAAGGGTCAAAGGGGATGGTGC
GTTGGAAACTCTATCGATAACCCCGATGAGGGATGGATTCAATTTGGTCT
CTGCTTCTTCGCGGCGTGACGCTTCTGCTGCGAAGGGCAATGATTCCAAG
TCTTTTTCGAATTGGTGAGCAAATCGCCCGGATGTGGATAAGCAATCGGA
CGCAATGAAGACCGTACAGTGTAGTAGTCTTCCCGTGCATCATCGCACTG
ATCCCCAGCCCTGAACCTTCCCCGCTTTCCATTCGATCTATTTTGACTGT
TAAGTGTACTAACCTGAGCACCCCCCCACTCCTCCTCCCACACAAACGAA
CACAGGGTAAACCCAATACCGGAGAACAACAACAACAACAATATGTGCAA
TAGATACTCTGATCTTCATCCGTCCTGTTGGTGAAGTTCTCCTCGGCAAT
CTGACCCCCATGTTGGGTGTTTGAAACTAATGGAAACTAATGGCGTACAC
ACCCATGATTATCGTACCCCTTCCCTGTCCCTCCTTCCTCCCCCTACCAA
CACGAACACAGGGTAAATCCAGTGTCTGACAACAGCAATAGCAACAATAA
TAGGGACGACAACAACTCAGCACGAGTATGCCGGAGCGACGCAGGCTTCG
ACGGCGGGCAAGCAAACGGCTTCTCCAACAGTAGCACCTCTAACAACAAC
GCGACCGCAGGAAGCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig13834:2967..3684-

>mRNA_H-paniculata_contig13834.2352.1 ID=mRNA_H-paniculata_contig13834.2352.1|Name=mRNA_H-paniculata_contig13834.2352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig13834:2967..3684- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGCGTTCCTGGATCAAGCACGGGGAAAAGGGTCAAAGGGGATGGTGC
GTTGGAAACTCTATCGATAACCCCGATGAGGGATGGATTCAATTTGGTCT
CTGCTTCTTCGCGGCGTGACGCTTCTGCTGCGAAGGGCAATGATTCCAAG
TCTTTTTCGAATTGGCGAGCGTTCCTGGATCAAGCACGGGGAAAAGGGTC
AAAGGGGATGGTGCGTTGGAAACTCTATCGATAACCCCGATGAGGGATGG
ATTCAATTTGGTCTCTGCTTCTTCGCGGCGTGACGCTTCTGCTGCGAAGG
GCAATGATTCCAAGTCTTTTTCGAATTGGGTAAATCCAGTGTCTGACAAC
AGCAATAGCAACAATAATAGGGACGACAACAACTCAGCACGAGTATGCCG
GAGCGACGCAGGCTTCGACGGCGGGCAAGCAAACGGCTTCTCCAACAGTA
GCACCTCTAACAACAACGCGACCGCAGGAAGCCTCGGTAAATCCAGTGTC
TGACAACAGCAATAGCAACAATAATAGGGACGACAACAACTCAGCACGAG
TATGCCGGAGCGACGCAGGCTTCGACGGCGGGCAAGCAAACGGCTTCTCC
AACAGTAGCACCTCTAACAACAACGCGACCGCAGGAAGCCTC
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