mRNA_H-paniculata_contig1383.2349.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1383.2349.1
Unique NamemRNA_H-paniculata_contig1383.2349.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1383.2349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1383contigH-paniculata_contig1383:2325..2966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1383.2349.1prot_H-paniculata_contig1383.2349.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1383 2489..2956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.2168543-UTR-H-paniculata_contig1383:2324..24881622929099.2168543-UTR-H-paniculata_contig1383:2324..2488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1383 2325..2488 +
1691480730.9777627-UTR-H-paniculata_contig1383:2324..24881691480730.9777627-UTR-H-paniculata_contig1383:2324..2488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1383 2325..2488 +
1622929099.2567713-UTR-H-paniculata_contig1383:2956..29661622929099.2567713-UTR-H-paniculata_contig1383:2956..2966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1383 2957..2966 +
1691480730.9959536-UTR-H-paniculata_contig1383:2956..29661691480730.9959536-UTR-H-paniculata_contig1383:2956..2966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1383 2957..2966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.2440693-CDS-H-paniculata_contig1383:2488..29561622929099.2440693-CDS-H-paniculata_contig1383:2488..2956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1383 2489..2956 +
1691480730.9883556-CDS-H-paniculata_contig1383:2488..29561691480730.9883556-CDS-H-paniculata_contig1383:2488..2956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1383 2489..2956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1383.2349.1

>prot_H-paniculata_contig1383.2349.1 ID=prot_H-paniculata_contig1383.2349.1|Name=mRNA_H-paniculata_contig1383.2349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MPKKGTNKPTGGAPGNPTAANKKAKTAALCLYREGEALDAVGDSLELRWQ
QLWAEQQEHIKNVYAYQERVANMKKAEKDGELAAARANKYAVISKAAETC
HTTNEWAHALLHENDSPTADSTAQTIAEETTQEQTSAQEQREVLKPKQGA
LNSAC*
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mRNA from alignment at H-paniculata_contig1383:2325..2966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1383.2349.1 ID=mRNA_H-paniculata_contig1383.2349.1|Name=mRNA_H-paniculata_contig1383.2349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=642bp|location=Sequence derived from alignment at H-paniculata_contig1383:2325..2966+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGAAGCAAACCCGGGTCCCCGAAAAACAATGCACGCCACGAATTTTTG
AAAACCCTAGAATATGACGCGTGGAGCTGTCTTCTTGGTTTTCGAAGGCT
CACAGCCATTCCCGAGAACCGAGCTCACGAAATACGCCACCCCAGGGCTG
CTGCCCATACCACGATGCCGAAGAAGGGCACCAACAAGCCTACCGGCGGC
GCCCCCGGTAACCCGACGGCGGCAAATAAGAAGGCCAAAACGGCTGCCCT
GTGCTTGTATAGAGAAGGAGAGGCCCTTGATGCTGTGGGTGACAGTCTTG
AGCTGCGGTGGCAACAGCTGTGGGCAGAGCAGCAAGAGCACATAAAGAAC
GTCTATGCGTACCAAGAACGAGTCGCGAATATGAAGAAAGCGGAGAAGGA
TGGAGAGCTGGCTGCTGCGCGCGCGAACAAGTACGCTGTTATTTCGAAAG
CAGCAGAAACCTGTCATACTACGAACGAATGGGCCCATGCACTCCTACAC
GAAAATGACAGTCCCACAGCGGATTCCACAGCCCAGACCATCGCAGAGGA
GACGACGCAGGAGCAGACGTCCGCTCAGGAACAGCGTGAAGTCTTGAAAC
CCAAGCAAGGTGCTCTCAACTCGGCATGTTAGTCCCGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1383:2325..2966+

>mRNA_H-paniculata_contig1383.2349.1 ID=mRNA_H-paniculata_contig1383.2349.1|Name=mRNA_H-paniculata_contig1383.2349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig1383:2325..2966+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGAAGAAGGGCACCAACAAGCCTACCGGCGGCGCCCCCGGTAACCC
GACGGCGGCAAATAAGAAGGCCAAAACGGCTGCCCTGTGCTTGTATAGAG
AAGGAGAGGCCCTTGATGCTGTGGGTGACAGTCTTGAGCTGCGGTGGCAA
CAGCTGTGGGCAGAGCAGCAAGAGCACATAAAGAACGTCTATGCGTACCA
AGAACGAGTCGCGAATATGAAGAAAGCGGAGAAGGATGGAGAGCTGGCTG
CTGCGCGCGCGAACAAGTACGCTGTTATTTCGAAAGCAGCAGAAACCTGT
CATACTACGAACGAATGGGCCCATGCACTCCTACACGAAAATGACAGTCC
CACAGCGGATTCCACAGCCCAGACCATCGCAGAGGAGACGACGCAGGAGC
AGACGTCCGCTCAGGAACAGCGTGAAGTCTTGAAACCCAAGCAAGGTGCT
CTCAACTCGGCATGTTAGATGCCGAAGAAGGGCACCAACAAGCCTACCGG
CGGCGCCCCCGGTAACCCGACGGCGGCAAATAAGAAGGCCAAAACGGCTG
CCCTGTGCTTGTATAGAGAAGGAGAGGCCCTTGATGCTGTGGGTGACAGT
CTTGAGCTGCGGTGGCAACAGCTGTGGGCAGAGCAGCAAGAGCACATAAA
GAACGTCTATGCGTACCAAGAACGAGTCGCGAATATGAAGAAAGCGGAGA
AGGATGGAGAGCTGGCTGCTGCGCGCGCGAACAAGTACGCTGTTATTTCG
AAAGCAGCAGAAACCTGTCATACTACGAACGAATGGGCCCATGCACTCCT
ACACGAAAATGACAGTCCCACAGCGGATTCCACAGCCCAGACCATCGCAG
AGGAGACGACGCAGGAGCAGACGTCCGCTCAGGAACAGCGTGAAGTCTTG
AAACCCAAGCAAGGTGCTCTCAACTCGGCATGTTAG
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