mRNA_H-paniculata_contig13827.2348.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13827.2348.1
Unique NamemRNA_H-paniculata_contig13827.2348.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13827.2348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13827contigH-paniculata_contig13827:6438..6969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size532
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13827.2348.1prot_H-paniculata_contig13827.2348.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13827 6559..6957 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.1577759-UTR-H-paniculata_contig13827:6437..65581622929099.1577759-UTR-H-paniculata_contig13827:6437..6558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13827 6438..6558 +
1691480730.9329593-UTR-H-paniculata_contig13827:6437..65581691480730.9329593-UTR-H-paniculata_contig13827:6437..6558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13827 6438..6558 +
1622929099.1821449-UTR-H-paniculata_contig13827:6957..69691622929099.1821449-UTR-H-paniculata_contig13827:6957..6969Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13827 6958..6969 +
1691480730.9614642-UTR-H-paniculata_contig13827:6957..69691691480730.9614642-UTR-H-paniculata_contig13827:6957..6969Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13827 6958..6969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929099.1710124-CDS-H-paniculata_contig13827:6558..69571622929099.1710124-CDS-H-paniculata_contig13827:6558..6957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13827 6559..6957 +
1691480730.9491365-CDS-H-paniculata_contig13827:6558..69571691480730.9491365-CDS-H-paniculata_contig13827:6558..6957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13827 6559..6957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13827.2348.1

>prot_H-paniculata_contig13827.2348.1 ID=prot_H-paniculata_contig13827.2348.1|Name=mRNA_H-paniculata_contig13827.2348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MWRRYPERSQDFAQDSVRLSPTKTPNVNPQLGAVRAAMLERASALGGSGR
LSLTVEYRVRTLVLNTTLLKLPKVTHGKYPRRNGCQFRVLFLPEHPALAG
EPHNLPTQDSFFSLEGGEETIAQHLPRNRVRV*
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mRNA from alignment at H-paniculata_contig13827:6438..6969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13827.2348.1 ID=mRNA_H-paniculata_contig13827.2348.1|Name=mRNA_H-paniculata_contig13827.2348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=532bp|location=Sequence derived from alignment at H-paniculata_contig13827:6438..6969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAAATGCTGAGATCTTTTTTTTCCTCCTTGAAAGGAGGGGAGGAAACC
TTTGCCCAACGCTTACCCCGAAACCGGATTCGTGTGTCGGTTACCCGAAG
GCCCGGCTAGATCCGTAAATCATGTGGAGACGTTACCCTGAGCGTTCGCA
AGACTTTGCTCAGGATAGTGTGCGGCTTTCACCTACTAAAACCCCCAATG
TTAATCCTCAACTTGGCGCAGTACGCGCCGCCATGCTCGAACGAGCTTCG
GCCCTGGGTGGTAGTGGGAGATTATCGCTTACGGTCGAATACCGTGTTCG
GACTCTCGTCCTTAACACTACTTTGTTGAAGTTGCCGAAGGTAACTCATG
GCAAATACCCTAGGAGGAACGGCTGCCAGTTCAGGGTCCTCTTTTTGCCG
GAACACCCCGCTCTGGCAGGCGAACCCCACAACCTCCCCACCCAGGATTC
TTTTTTTTCCTTGGAAGGAGGGGAGGAAACCATCGCTCAACACTTACCCC
GAAACCGGGTTCGTGTGTAGGTTACCCGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13827:6438..6969+

>mRNA_H-paniculata_contig13827.2348.1 ID=mRNA_H-paniculata_contig13827.2348.1|Name=mRNA_H-paniculata_contig13827.2348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig13827:6438..6969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGAGACGTTACCCTGAGCGTTCGCAAGACTTTGCTCAGGATAGTGT
GCGGCTTTCACCTACTAAAACCCCCAATGTTAATCCTCAACTTGGCGCAG
TACGCGCCGCCATGCTCGAACGAGCTTCGGCCCTGGGTGGTAGTGGGAGA
TTATCGCTTACGGTCGAATACCGTGTTCGGACTCTCGTCCTTAACACTAC
TTTGTTGAAGTTGCCGAAGGTAACTCATGGCAAATACCCTAGGAGGAACG
GCTGCCAGTTCAGGGTCCTCTTTTTGCCGGAACACCCCGCTCTGGCAGGC
GAACCCCACAACCTCCCCACCCAGGATTCTTTTTTTTCCTTGGAAGGAGG
GGAGGAAACCATCGCTCAACACTTACCCCGAAACCGGGTTCGTGTGTAGA
TGTGGAGACGTTACCCTGAGCGTTCGCAAGACTTTGCTCAGGATAGTGTG
CGGCTTTCACCTACTAAAACCCCCAATGTTAATCCTCAACTTGGCGCAGT
ACGCGCCGCCATGCTCGAACGAGCTTCGGCCCTGGGTGGTAGTGGGAGAT
TATCGCTTACGGTCGAATACCGTGTTCGGACTCTCGTCCTTAACACTACT
TTGTTGAAGTTGCCGAAGGTAACTCATGGCAAATACCCTAGGAGGAACGG
CTGCCAGTTCAGGGTCCTCTTTTTGCCGGAACACCCCGCTCTGGCAGGCG
AACCCCACAACCTCCCCACCCAGGATTCTTTTTTTTCCTTGGAAGGAGGG
GAGGAAACCATCGCTCAACACTTACCCCGAAACCGGGTTCGTGTGTAG
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