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Homology
BLAST of mRNA_H-paniculata_contig1382.2345.1 vs. uniprot
Match: A0A6H5L7I3_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7I3_9PHAE) HSP 1 Score: 114 bits (285), Expect = 7.380e-23 Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 3
Query: 1359 SKEFPQNLECAMCLGPIAIVAVFACGHEACWKCAHEWCRQGTTPTMDCPTCRAPVPRNDFRRCVILDENMPLAYSERSKRNGKERKKFDAPVRLITDA 1652
S+E P+ LECA+C P+A+ A+FACGH +CW+CAH+WC + T+ TMDCPTC VPR+DFRRCV+LDE + A + + + R + + +L +A
Sbjct: 297 SQELPRILECAVCFNPLAVAALFACGHGSCWECAHDWCSRETSSTMDCPTCHVSVPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQKLAREA 394
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | Zinc finger, RING/FYVE/PHD-type |
Ec32 ortholog | Ec-27_006630.1 |
Exons | 3 |
Model size | 1711 |
Cds size | 1383 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1382.2345.1 >prot_H-paniculata_contig1382.2345.1 ID=prot_H-paniculata_contig1382.2345.1|Name=mRNA_H-paniculata_contig1382.2345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=461bp
MEELWTDALNLNAGESSGEVMSYGHERGCVNDGSSDDEEEEDEGRPPKRR RGKQPLAHLRQSMRYHHNTADNGSNNGMHNDQQHLSDPAAVAPAAAAAAV TAARTATGSSDEDEDPGDEGGSEDGGGDDDEELDDDAKSTLSSSVSQNPN EIIEILSEEEEVEEDEGDDEDEEEEDGEEDDIDMHPRHSSTPASLNLSDV ALTANSGNNSNNNSLVVSSARGTPAPGAVRRCWETGLGGQDSWSAVPAAS AAAASAGGPSSVDRKTRCSRNNSADDDGDHQCHNQHRGEAGVAAAAEGNR IRSRATLRLSAPSPAGGGKDGGKMSPEEKRAMTEAEQLAASSGAASGMKS KDQVVGGGGMSKEFPQNLECAMCLGPIAIVAVFACGHEACWKCAHEWCRQ GTTPTMDCPTCRAPVPRNDFRRCVILDENMPLAYSERSKRNGKERKKFDA PVRLITDALL* back to topmRNA from alignment at H-paniculata_contig1382:1001..7482- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1382.2345.1 ID=mRNA_H-paniculata_contig1382.2345.1|Name=mRNA_H-paniculata_contig1382.2345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6482bp|location=Sequence derived from alignment at H-paniculata_contig1382:1001..7482- (Halopteris paniculata Hal_grac_a_UBK monoicous) GTTTTGCGGAAGTTGTGCAATCCAGATGTCCAGTAAGTTACTCTATCGGG
TGGAGAGAGCAAATAATTTGTCTCCTCGGTGTACTCTCGTCGTTCGAATT
TCTCCCTGAACGCAAGGCACGAAGAGGGTCCTCCCCTCGTCGAGAACGGT
TGAAACTCTGCCACGTCTTTCTCCCCCGGAACCAACAGTAAAAGTACCAC
AGACCGAAATAGAGCTACCAGCACCTGATTCATCTAGCAGTACTCTGTAA
GTAGTCGTTCGGTTGTTTTTGAGAAAATATGGAAGAGCTCTGGACGGACG
CGCTGAACTTGAATGCCGGCGAATCATCCGGAGAAGTCATGAGCTACGGG
CACGAACGAGGTTGCGTGAACGACGGAAGCTCTGATGACGAGGAGGAGGA
GGATGAGGGTCGTCCCCCCAAGCGGAGGCGTGGCAAGCAGCCTTTGGCGC
ACCTCCGGCAATCGATGCGATATCACCACAACACTGCTGATAATGGTAGC
AACAATGGTATGCATAACGATCAGCAACATCTATCCGACCCAGCAGCTGT
TGCACCAGCAGCTGCAGCGGCGGCGGTGACCGCAGCTAGAACAGCAACAG
GAAGTTCAGACGAGGACGAAGACCCAGGGGATGAGGGCGGCAGTGAAGAC
GGAGGGGGCGACGACGACGAAGAGCTCGACGACGACGCGAAATCGACATT
GAGTTCATCCGTCTCTCAAAACCCTAACGAAATTATCGAAATTCTCTCAG
AGGAAGAGGAAGTAGAAGAAGATGAAGGAGACGACGAGGATGAGGAAGAA
GAGGACGGCGAGGAGGACGACATCGATATGCACCCCCGGCATTCGTCCAC
ACCTGCGTCGCTCAATCTCTCCGACGTTGCGCTCACCGCAAACAGTGGTA
ACAACAGCAATAATAATAGCCTAGTGGTGAGCAGCGCGCGCGGAACACCA
GCCCCGGGCGCAGTACGCAGGTGCTGGGAAACAGGCCTCGGCGGTCAAGA
CTCTTGGAGTGCAGTGCCGGCCGCATCAGCAGCGGCTGCTTCGGCGGGCG
GTCCTTCTTCAGTCGACAGAAAAACGCGATGTAGTAGGAATAACTCTGCC
GATGATGATGGTGATCATCAGTGCCATAATCAACACCGAGGAGAGGCGGG
AGTAGCAGCGGCAGCAGAGGGGAATAGGATTCGAAGTCGTGCAACTTTGC
GGCTCAGCGCTCCGTCGCCTGCTGGCGGGGGAAAAGACGGAGGGAAAATG
TCGCCGGAGGAAAAGCGGGCTATGACGGAAGCGGAACAGTTGGCTGCATC
GAGCGGCGCGGCGTCCGGAATGAAATCGAAGGACCAGGTCGTGGGAGGGG
GTGGGATGAGCAAGGAATTTCCCCAAAATCTGGAGTGTGCCATGTGCCTG
GGACCCATCGCTATCGTGGCGGTGTTTGCGTGCGGGCATGAGGCGTGCTG
GAAGTGCGCGCATGAGTGGTGTAGACAGGTGCGTGTACGCCGTGTTTATC
TTATTTGTGGTGCTACTGCTTATAGATTCGTGTAATTGTGAAAATAATTG
CCTTCTTTGTGGTGGAACGTATTTGTATATATCTATCGAGTTTCCTGCAA
CAACTTCCGTTCGTGCATCCTGTCCTTTGTTTTCGCTTGACCTCCTTTCT
TTGTGATGAATGGTTACCTGTGGTGTGCACATAACACGTGTCACTAACGC
CGCGTGTGCTCTCATAAGCACTGCTGTCTGTCTTAGATGACAATAATAGC
TGTTGTCGACGCTGTCGCATTTTCCTCTGCTGCACACTTGTTATTACATT
ACATCAACATATGCACTTATTATATAGGTGAGTATGCACCATAGAGGTGG
AGATTTCAACACATCACTGACTGTTGTGGCGCTTGACAGCTCTGACACGC
AAATTGCAGTAAAAAAAACGGAAGTAGGTTCTGAATTAAGCTGTTACTCG
CACAAATCCCCGTATTCGCGTGTGTTCGTTGCTCCACCCTTTACGTAGTG
ATGTCGAGGGTGGCGCAAATGGCCCCTCCTCAAGATGAATCGCTTAAAGG
TACATTCATGTCGACCGTTTGTGCGTTCCTTTATCCTTCTGGTCTCTTGA
TTGTCTCACCGCCTCGTTATTTCACTTCTACCGTGAATGATGTCTGATGT
CTGATGTTGCGTTTTTCGGCGGGGAGATTTCGTTGTTGTTGCTCATGGGC
TGTTCTGATTGGCGCGTTTTTTGAACGGCCAATGGAGATTCAGTCCGTTT
TTCACTTGTTCACATCTAGAAGTTCGTGTGTTTTATGTTGTGTATGGTGG
TGTAAGGCACATAGGATTGTGTCTGTAATAGCGAGTTTGCGCATGAGTTG
TTCCGCTGAGAATAAGGGCACCTCCTTCTAGACACGAAGAATCACTTACC
GAAATCCGGAATCTGGGCATTGATGAACGTGTTGACCGATTTTGTTTCCC
CTCTTCATTGATCTCGCAGAGGAAGGCTACTTGCAAACTTCTCTCGGGTC
CGTGTATGTATTCGAATACATAATCAAAATTACCGAATCTTGACTACTCG
TTTTGTCTATCTGACCCCCTTTTTTTGCCCCGACAGGCAATAGTAATTAG
TACAGTACAGTAGAGACAACTGCATGCAGTCAGGACTGAGTCACGTTTTT
TGCGGAAGCACCTTGTCGGGATCTTCTCCGGTATGTAAAGAGACAACTTA
AAATTTTCACCCCGAGGTGCATCAGCCCGGGTGTTGAGTGTTAGTTCCTC
TAACCTGTCCAATGTTAAACCTGTTCACCTTAGACCCTTCTGCCTTATTT
GGTGCCTGGTATTTTCATCGTTATTACTCCAGGTCCCATAGGGTCGTAAA
ACGGGCCGAACCGACCGATTGCAAGCGCCGCTCCTGTACGTCCACCCCGA
ATATTTTGTTTCTTGTTCACAATTTTTTTTTTTTTTTTAACCCCTGGAAG
GCTGAGGTAAAAACCTTTTCCGCTGCTTCCATATCCAGGCATTCACCCGG
GTATGTCTACATTTCCTTTAATAGAACAGAGTTTCCTCTGCGGGGTAGGC
GCCACCCCGGCTTCTTGTTCACATATCACGGAACGTCTGCGCGCTGTTTT
TGCTCGAATACATCATGAGTTGGTTTATATTTGGACGTTCTCTGCTCGAA
TGTTCGATGTACGTAATTAATTCTTTCAGCGCGCATGTTTTTGAATATGT
CTGCGTATTCAGTCGCATGCGGGGAGAGGGGGAAACAAAACGGGGGTATA
CTCAGAATCTTAAAGATTCTGGATTGCTTGATTATGATCCACTAACTGAA
ACGAATAAGGGGAAAAGGTAGCAGATGTAACCGCTGCGTGCCGCCCCGTC
GTATCGAGAAAAAATCTAGGGAGGTGCAAGATCGTGCCGGGACTCGATAC
TGGCTGGGTAACCACAGCAAAAACAAGTGAATTTGCCGTAGCCACGGTTG
ATTATTGATAATGAACTGATATGAGCCATGAAGAACTACTAATAGTTGTT
GTCCTGATACTGGCACAGGGCAGATGATACATGGAAAGCCTCGTCTTCTG
TTTTGCTTACGATCGTCGTGATTTGTAATCCTGTCGCAGACATATATGCT
CTCTTTGGAGACGCTGTCAGACATGAAATTCGCATGATACATTTTTTAAA
ACATGTAAATTATGCTGCAGAAGATCTTCGTAGTGTTTTGAGGCGGACAT
TCAAGTCTTGAACGCTTCGCGCTCATTTCCCTGTGTTCTGGCCTTGTTGA
GGAGATATTTCATTTTCATCAGGTCTGGTCTTGTCAATGGTTTCAGTCTA
TATGCTGATGTAGTTACAGTACAGTATGCTTAGGCTACAATATTCAAATA
TCTATGCACTACAGTACTATCGCGATGTAGTGCATTACATCTGTATTGAT
TCCAGTAAACATGCCTGATATATCTACGTAATGCAGATGGCACATCATAT
CGATATACGCCCTGGCATTACCGATATTTAGGGTTGTGTACAGACTAGCA
CCGATATTTTTCGATACGATGTATTCATCATTCTGGGGGACCGTTGCATT
GGCTTTGGCCGTTACCAACTATGTAGTTGCATGTATTGACCATTATCCTG
ACCGTGGGCCTGAGCGCGAATTACTGGGGAAAACCAAATCATTGGCGGTG
CATTTGACACGTTGAACGAGGTACACATCTGTACGTAGATAGTGCAATTA
ATTCAGTGAGCCCTGCGGACACGCAGACCGAACGACCCGCTTGTCCAACT
AGCTTTGACCTTGCGCCGATCTGTTTGTCCAATTGTCTTTTCCGCTAAGC
TATTATTTGGCCTGTGTTAGAATCTGTCTGCTGATGCATGAAAACATTGA
CTTTTTGCCGACGACACAGCCCAATCTTTTCATATGAGGTGCGGGTTTTT
CGCCATACTCTAGTATGCTGCAGTCAGTATCCGTACAGGTATACACTGTA
CACTGTTGTGTAGACATTTCTAGCACACATCTACCTTCAGCCACGCTTGC
AGTGCGTACCCCTTTGACCTGGATTTTTATCATTTCTTGGAATATTTTTC
GCGTCATTTGGTGAAAAAAATGTATCTTGTCATTTGATTTTGATGTAGAG
CTCTAAATCCCTTTTTCATGATTGGCTGATATGATACCTGGTAAATCGGT
ATCATATCGATACCGTGTATCAAATGATATCATCTGCCGATATACATTCC
TAGATCCCTAGCTCTGTTGTGGCTGCTGTTGTTGTTGCCGTTGATGGAGG
GAGCGGTCAATTGTGGCCAACGGAGTGATAATTGGTGATGCAATATTCCA
TCATAAGTGTTTCGGAAAGTCGGGGCCCTACCGTGTGTCACAAAAAGGCG
TATTTTTTAGTGCGAACCTGGACAACAGGAAACGACATTATCATTGGAGA
GCCATGCATCTTGCCACTGATTTGAATTGTACTGTAGTATACTGCCTATT
ATTTTGGTGGTGTTCGTCCCTGTCTGTACAGGCATTTTGGTGCTGCCTTG
CTGAGTCTCATGTGTGCAGTATGTCGCTGTTTTTCCTTGTGCTCATCTAT
TGCTTTTTGTTGATGCAAGACTCTCAGTGTCTCTGCGGTATCACACGTGT
GTTGGGTGTTGGAGCAGATCGATCAAGTCGATGCAGATGTTTAGGTGGCC
TTACGTTGTTGGAGCAGGTCCGAATAGTCCTGAACACGGAGGACGAACCT
ATATGCAACTAGTCATTATTATGCCCACGGTGAAGTGTACAAGGGATCCT
GTGTTTGGTCGGTTGGTTTGATCAGAAAATGTCCATGTACAGTACTTTAT
CCCGTTTCTTTTTTTTTTTGCGCTTCGAATCTTGTGTCAAACCACCCATC
TTCTTTCGGGTACATGGGAAATACATGGGTTCGTGTCCATCTCACGCAGG
GTACTACCCCTACGATGGACTGCCCTACATGCCGCGCGCCAGTGCCAAGA
AATGACTTCAGACGATGCGTCATACTCGACGAGGTGAGACTTCACAAATG
TTCTCTTGTTAACTGTCCTGTTAAAGGAAATGTAGAAATATTTTGGTAAA
ATACTGGAGTATGGAAGCATCGGTAAAAGTTTTTGCCTCAGCCTTCCGGG
AGTTAAAAAAAAAAAAAAAAAAATGTCATATCTTGTTTTTATGTAATGGA
GAGTGATTTGCACCCCCCGGACAAATACGAATACTTGCAAATGATTTTCA
CAAAAAAACTGAAAGTATTCGCATGCATTTCACAATAAGCCCACACATAG
AACGAAGTACCCACTCTTGTTCATTCGATTTACGAGTAATATTAACAGTC
GCGGATGGTCCAAGGATAAAAAAAATACACAAGCTCACGCTGAAACTCAG
GCGAATACGTTCGGTTTTTTTGCAAACGCTATTTGCAAGTAATCGTATTT
GTCTGGGGGGTGATGATCTTGTATCGTTGGATCACGGGTCTGAGCGATTG
GGTTGAAGCCCTCGAGAAAAATCATGGCCTGGTTAAGGTTAATAGGGTAT
CTATATAATGAACCTGTTTTGCAAATCTCGATTTGGTCCTGTATAGCTAA
CAGTAAGCTGCTCGTCGCAGACCCCCTCCGGACCCCAGCGCATCCATACC
AAAGTCTTGTTACGAGGGGAATTCTCTTCGTATGTCGTATATTCCGTGAG
AGATACGAATGAATCGCCACTGCTGCCTATGACGAAGACGGTGGTGTAGG
TGGATTGAGGTTCTGGACGAGGAGCCCACTGTCAGCTATCTATGGACGCG
ACCAGATCGATTTTGCAGAAGAAATCGTTTTGCGCAAGCACTCTTATTGA
GCGGCACCCCCCCCCCCCCCCCCCGGGATACAGAATATGCCACTGGCGTA
CTCGGAGCGGTCAAAACGGAATGGAAAAGAGAGAAAAAAATTTGACGCAC
CAGTTCGCCTCATCACAGATGCACTCTTGTAGCTATGCGACCAAGAGGCG
TCGTTGGTCTTCCTCACCTCAGCAGGACGCGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig1382:1001..7482- >mRNA_H-paniculata_contig1382.2345.1 ID=mRNA_H-paniculata_contig1382.2345.1|Name=mRNA_H-paniculata_contig1382.2345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2766bp|location=Sequence derived from alignment at H-paniculata_contig1382:1001..7482- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGAAGAGCTCTGGACGGACGCGCTGAACTTGAATGCCGGCGAATCATC CGGAGAAGTCATGAGCTACGGGCACGAACGAGGTTGCGTGAACGACGGAA GCTCTGATGACGAGGAGGAGGAGGATGAGGGTCGTCCCCCCAAGCGGAGG CGTGGCAAGCAGCCTTTGGCGCACCTCCGGCAATCGATGCGATATCACCA CAACACTGCTGATAATGGTAGCAACAATGGTATGCATAACGATCAGCAAC ATCTATCCGACCCAGCAGCTGTTGCACCAGCAGCTGCAGCGGCGGCGGTG ACCGCAGCTAGAACAGCAACAGGAAGTTCAGACGAGGACGAAGACCCAGG GGATGAGGGCGGCAGTGAAGACGGAGGGGGCGACGACGACGAAGAGCTCG ACGACGACGCGAAATCGACATTGAGTTCATCCGTCTCTCAAAACCCTAAC GAAATTATCGAAATTCTCTCAGAGGAAGAGGAAGTAGAAGAAGATGAAGG AGACGACGAGGATGAGGAAGAAGAGGACGGCGAGGAGGACGACATCGATA TGCACCCCCGGCATTCGTCCACACCTGCGTCGCTCAATCTCTCCGACGTT GCGCTCACCGCAAACAGTGGTAACAACAGCAATAATAATAGCCTAGTGGT GAGCAGCGCGCGCGGAACACCAGCCCCGGGCGCAGTACGCAGGTGCTGGG AAACAGGCCTCGGCGGTCAAGACTCTTGGAGTGCAGTGCCGGCCGCATCA GCAGCGGCTGCTTCGGCGGGCGGTCCTTCTTCAGTCGACAGAAAAACGCG ATGTAGTAGGAATAACTCTGCCGATGATGATGGTGATCATCAGTGCCATA ATCAACACCGAGGAGAGGCGGGAGTAGCAGCGGCAGCAGAGGGGAATAGG ATTCGAAGTCGTGCAACTTTGCGGCTCAGCGCTCCGTCGCCTGCTGGCGG GGGAAAAGACGGAGGGAAAATGTCGCCGGAGGAAAAGCGGGCTATGACGG AAGCGGAACAGTTGGCTGCATCGAGCGGCGCGGCGTCCGGAATGAAATCG AAGGACCAGGTCGTGGGAGGGGGTGGGATGAGCAAGGAATTTCCCCAAAA TCTGGAGTGTGCCATGTGCCTGGGACCCATCGCTATCGTGGCGGTGTTTG CGTGCGGGCATGAGGCGTGCTGGAAGTGCGCGCATGAGTGGTGTAGACAG ATGGAAGAGCTCTGGACGGACGCGCTGAACTTGAATGCCGGCGAATCATC CGGAGAAGTCATGAGCTACGGGCACGAACGAGGTTGCGTGAACGACGGAA GCTCTGATGACGAGGAGGAGGAGGATGAGGGTCGTCCCCCCAAGCGGAGG CGTGGCAAGCAGCCTTTGGCGCACCTCCGGCAATCGATGCGATATCACCA CAACACTGCTGATAATGGTAGCAACAATGGTATGCATAACGATCAGCAAC ATCTATCCGACCCAGCAGCTGTTGCACCAGCAGCTGCAGCGGCGGCGGTG ACCGCAGCTAGAACAGCAACAGGAAGTTCAGACGAGGACGAAGACCCAGG GGATGAGGGCGGCAGTGAAGACGGAGGGGGCGACGACGACGAAGAGCTCG ACGACGACGCGAAATCGACATTGAGTTCATCCGTCTCTCAAAACCCTAAC GAAATTATCGAAATTCTCTCAGAGGAAGAGGAAGTAGAAGAAGATGAAGG AGACGACGAGGATGAGGAAGAAGAGGACGGCGAGGAGGACGACATCGATA TGCACCCCCGGCATTCGTCCACACCTGCGTCGCTCAATCTCTCCGACGTT GCGCTCACCGCAAACAGTGGTAACAACAGCAATAATAATAGCCTAGTGGT GAGCAGCGCGCGCGGAACACCAGCCCCGGGCGCAGTACGCAGGTGCTGGG AAACAGGCCTCGGCGGTCAAGACTCTTGGAGTGCAGTGCCGGCCGCATCA GCAGCGGCTGCTTCGGCGGGCGGTCCTTCTTCAGTCGACAGAAAAACGCG ATGTAGTAGGAATAACTCTGCCGATGATGATGGTGATCATCAGTGCCATA ATCAACACCGAGGAGAGGCGGGAGTAGCAGCGGCAGCAGAGGGGAATAGG ATTCGAAGTCGTGCAACTTTGCGGCTCAGCGCTCCGTCGCCTGCTGGCGG GGGAAAAGACGGAGGGAAAATGTCGCCGGAGGAAAAGCGGGCTATGACGG AAGCGGAACAGTTGGCTGCATCGAGCGGCGCGGCGTCCGGAATGAAATCG AAGGACCAGGTCGTGGGAGGGGGTGGGATGAGCAAGGAATTTCCCCAAAA TCTGGAGTGTGCCATGTGCCTGGGACCCATCGCTATCGTGGCGGTGTTTG CGTGCGGGCATGAGGCGTGCTGGAAGTGCGCGCATGAGTGGTGTAGACAG GGTACTACCCCTACGATGGACTGCCCTACATGCCGCGCGCCAGTGCCAAG AAATGACTTCAGACGATGCGTCATACTCGACGAGGGTACTACCCCTACGA TGGACTGCCCTACATGCCGCGCGCCAGTGCCAAGAAATGACTTCAGACGA TGCGTCATACTCGACGAGAATATGCCACTGGCGTACTCGGAGCGGTCAAA ACGGAATGGAAAAGAGAGAAAAAAATTTGACGCACCAGTTCGCCTCATCA CAGATGCACTCTTGTAGAATATGCCACTGGCGTACTCGGAGCGGTCAAAA CGGAATGGAAAAGAGAGAAAAAAATTTGACGCACCAGTTCGCCTCATCAC AGATGCACTCTTGTAG back to top
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